SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2196

Length: 2202 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2196
AGGGCTGGTGACAAGGTGATATTCACAGGCACGGTTGTTGTCATACCAGACATATCAGCCTTATCCTCACCTGGTGACAGAGCAGAATCTCGCAGAGAAGGTCCTCAAAACCGAAGTGCATCCAGTGGTTATGAAGGAGTGCGTGGGCTTAAATCTCTTGGTGTACGAGATCTCTCGTATCGTCTGGCATTTATTGCCAATTCAGTGCAGCTTCATGACAAGAAAAGAGGTATTGATTTTAGAGGAGTAAAGAAGGATGGCGAGGAAGATGATACACCCCATTTTACGATGGAAGAAATAGATGAGATCCAAAGAATGAGAGGCACCATGGATTTCTTTAATAAATTGGTTGAAAGTATTGCACCAACTGTATTTGGTCATCAAGAGGTCAAGCGAGCAGTGTTGCTTATGCTTCTGGGTGGAGTTCATAAACAGACTCATGAGGGAATCAATTTAAGAGGGGACATTAACGTCTGCATCGTTGGAGATCCAAGTTGCGCCAAGTCACAATTCTTGAAGTATGCATCAAGCATTGTATCTAGGGCTGTCTATACCTCTGGAAAATCTTCTTCTGCTGCAGGCTTAACAGCAACTGTTGTAAAGGAGCCAGAGACTGGAGAATTCTGCATTGAGGCTGGAGCTTTGATGCTGGCTGACAATGGAATATGCTGTATAGATGAATTCGATAAAATGGATGTAAAAGATCAGGTTGCAATTCACGAGGCTATGGAGCAACAGACAATAAGCATTACAAAAGCTGGCATTCAAGCAACTCTAAATGCCCGTACCTCTATATTAGCAGCTGCAAATCCTACTGGTGGGCGTTATGATAAATCAAAGCCACTAAAGTACAATGTAGCACTTCCTCCTGCGATTCTTTCCAGGTTTGACCTGGTTTATGTCATGATAGATGAGCCAGATGATCAGACGGATCACCATATTGCAGATCATATTGTTAGAGTTCACCAAAAGCATGAAGAGGCACTGTCTCCATCTTTTACTACTGCTCAAATTCAGCGATACATTGCTTATGCAAAGACCCTTAAGCCAAAGCTAGGTACTGAAGCCAGAAAGGTCCTAGTTGATGCTTATGTATCCTTACGGCGAGGTGATGCTGCACCTGGTAGTCGAGTTGCATACAGAATTACAGTGAGGCAATTGGAAGCTTTGATAAGATTGTCTGAGGCCATTGCTCGAGTGCACTTGGATTCTGAGGTGCGGCCAGCCCATGTTCATATGGCAGGGAGACTAATTAGCACATCCATTATCAGTGTTGACTCAAATGAGATTGATCTGGCTGATTTCGAAGATGCGGAGAATAACAATAATGATAGAGGTGCTGGGGACAATGAGAACCAACCAGCAGAAGCAGAAGGCCATCAACCTTCAGGCAATGGTACAACAGCAGCAGAAGGAAAAGCTGGTGATCAACCAAAGAAGAAAATGACAGTTACATATGAGCATTTCCAAAAAGTTACTCGTGCCCTTGTCATGCGGCTTAGACAACATGAAGAATCACTTAAAGATGAGACTGGTTTAGCTGGTTTGAAACAGGCAGATCTAATCAAGTGGTACGTTGAAGATTTGAACTCCCAGCAGGTTTTTGATACAATGAGTGGATTACTGGAAGAAGTAAAAATTGTGAGGTCGATCATACAGCATTTGATAGACAGGGAAGGTGTTCTTGTGGTTCTTGATGACAGCCCACAAGCACCAGCACCTGGGACAGAAGGATTAGCCCAGTCCACTAGGAATGATCAGAGGGTTTTAGCAGTTAATCCCAACTATGTCTTAGAGTAGGAACTTTATATCAAACATGGCAAAATTTCTATGGAATTAACCCATATTAAGCATAGGCCATTATGATCTAATGCAGTTTAATTATATTCTGCATTTCTGGTTGCCAGTGAAAAGGAAGCAGTTGACATATGGAAACGAATCTGTATTTCTATATCAAACCCAGCTGATGATATTAAGTAGTTCAGATAAGTCTGTATTGCACAGGAGTTGCATGCTTATTAGAATCGATTTTTTTTACCTCACTACCGTTGCTTGTTATGTGAAGTCTCCTATCACTGCACTGGGGAGTTCAACATGTATTCAATCCTAAAAGAAGTTTCATGGGTACTTTGAATTATTTTGTTTTATTTATTTTTCAGTGGGTTAATGATTTGAAGAAATGGATTTCCTTAACGATCCAAA

Ace file of the UniGene sp_v1.1_unigene2196

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family	-	-	45%
FL-Next	sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress).	-	-	44%
Blast2go	minichromosome maintenance protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	0.0	75%
Blast2go	Mini-chromosome maintenance, conserved site	IPR018525	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P43299

Fln msg: your sequence is shorter than subject: 600 - 716

Fln protein: RAGDKVIFTGTVVVIPDISALSSPGDRAESRREGPQNRSASSGYEGVRGLKSLGVRDLSYRLAFIANSVQLHDKKRGIDFRGVKKDGEEDDTPHFTMEEIDEIQRMRGTMDFFNKLVESIAPTVFGHQEVKRAVLLMLLGGVHKQTHEGINLRGDINVCIVGDPSCAKSQFLKYASSIVSRAVYTSGKSSSAAGLTATVVKEPETGEFCIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDEPDDQTDHHIADHIVRVHQKHEEALSPSFTTAQIQRYIAYAKTLKPKLGTEARKVLVDAYVSLRRGDAAPGSRVAYRITVRQLEALIRLSEAIARVHLDSEVRPAHVHMAGRLISTSIISVDSNEIDLADFEDAENNNNDRGAGDNENQPAEAEGHQPSGNGTTAAEGKAGDQPKKKMTVTYEHFQKVTRALVMRLRQHEESLKDETGLAGLKQADLIKWYVEDLNSQQVFDTMSGLLEEVKIVRSIIQHLIDREGVLVVLDDSPQAPAPGTEGLAQSTRNDQRVLAVNPNYVLE*

Protein Length: 601

Fln nts: AGGGCTGGTGACAAGGTGATATTCACAGGCACGGTTGTTGTCATACCAGACATATCAGCCTTATCCTCACCTGGTGACAGAGCAGAATCTCGCAGAGAAGGTCCTCAAAACCGAAGTGCATCCAGTGGTTATGAAGGAGTGCGTGGGCTTAAATCTCTTGGTGTACGAGATCTCTCGTATCGTCTGGCATTTATTGCCAATTCAGTGCAGCTTCATGACAAGAAAAGAGGTATTGATTTTAGAGGAGTAAAGAAGGATGGCGAGGAAGATGATACACCCCATTTTACGATGGAAGAAATAGATGAGATCCAAAGAATGAGAGGCACCATGGATTTCTTTAATAAATTGGTTGAAAGTATTGCACCAACTGTATTTGGTCATCAAGAGGTCAAGCGAGCAGTGTTGCTTATGCTTCTGGGTGGAGTTCATAAACAGACTCATGAGGGAATCAATTTAAGAGGGGACATTAACGTCTGCATCGTTGGAGATCCAAGTTGCGCCAAGTCACAATTCTTGAAGTATGCATCAAGCATTGTATCTAGGGCTGTCTATACCTCTGGAAAATCTTCTTCTGCTGCAGGCTTAACAGCAACTGTTGTAAAGGAGCCAGAGACTGGAGAATTCTGCATTGAGGCTGGAGCTTTGATGCTGGCTGACAATGGAATATGCTGTATAGATGAATTCGATAAAATGGATGTAAAAGATCAGGTTGCAATTCACGAGGCTATGGAGCAACAGACAATAAGCATTACAAAAGCTGGCATTCAAGCAACTCTAAATGCCCGTACCTCTATATTAGCAGCTGCAAATCCTACTGGTGGGCGTTATGATAAATCAAAGCCACTAAAGTACAATGTAGCACTTCCTCCTGCGATTCTTTCCAGGTTTGACCTGGTTTATGTCATGATAGATGAGCCAGATGATCAGACGGATCACCATATTGCAGATCATATTGTTAGAGTTCACCAAAAGCATGAAGAGGCACTGTCTCCATCTTTTACTACTGCTCAAATTCAGCGATACATTGCTTATGCAAAGACCCTTAAGCCAAAGCTAGGTACTGAAGCCAGAAAGGTCCTAGTTGATGCTTATGTATCCTTACGGCGAGGTGATGCTGCACCTGGTAGTCGAGTTGCATACAGAATTACAGTGAGGCAATTGGAAGCTTTGATAAGATTGTCTGAGGCCATTGCTCGAGTGCACTTGGATTCTGAGGTGCGGCCAGCCCATGTTCATATGGCAGGGAGACTAATTAGCACATCCATTATCAGTGTTGACTCAAATGAGATTGATCTGGCTGATTTCGAAGATGCGGAGAATAACAATAATGATAGAGGTGCTGGGGACAATGAGAACCAACCAGCAGAAGCAGAAGGCCATCAACCTTCAGGCAATGGTACAACAGCAGCAGAAGGAAAAGCTGGTGATCAACCAAAGAAGAAAATGACAGTTACATATGAGCATTTCCAAAAAGTTACTCGTGCCCTTGTCATGCGGCTTAGACAACATGAAGAATCACTTAAAGATGAGACTGGTTTAGCTGGTTTGAAACAGGCAGATCTAATCAAGTGGTACGTTGAAGATTTGAACTCCCAGCAGGTTTTTGATACAATGAGTGGATTACTGGAAGAAGTAAAAATTGTGAGGTCGATCATACAGCATTTGATAGACAGGGAAGGTGTTCTTGTGGTTCTTGATGACAGCCCACAAGCACCAGCACCTGGGACAGAAGGATTAGCCCAGTCCACTAGGAATGATCAGAGGGTTTTAGCAGTTAATCCCAACTATGTCTTAGAGTAG___GAACTTTATATCAAACATGGCAAAATTTCTATGGAATTAACCCATATTAAGCATAGGCCATTATGATCTAATGCAGTTTAATTATATTCTGCATTTCTGGTTGCCAGTGAAAAGGAAGCAGTTGACATATGGAAACGAATCTGTATTTCTATATCAAACCCAGCTGATGATATTAAGTAGTTCAGATAAGTCTGTATTGCACAGGAGTTGCATGCTTATTAGAATCGATTTTTTTTACCTCACTACCGTTGCTTGTTATGTGAAGTCTCCTATCACTGCACTGGGGAGTTCAACATGTATTCAATCCTAAAAGAAGTTTCATGGGTACTTTGAATTATTTTGTTTTATTTATTTTTCAGTGGGTTAATGATTTGAAGAAATGGATTTCCTTAACGATCCAAA

Fln Alignment:

sp_v1.1_unigene2196___KKDGEEDDTPHFTMEEIDEIQRMRGTMDFFNKLVESIAPTVFGHQEVKRAVLLMLLGGVHKQTHEGINLRGDINVCIVGDPSCAKSQFLKYASSIVSRAVYTSGKSSSAAGLTATVVKEPETGEFCIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDEPDDQTDHHIADHIVRVHQKHE------EALSPSFTTAQIQRYIAYAKTLKPKLGTEARKVLVDAYVSLRRGDAAPGSRVAYRITVRQLEALIRLSEAIARVHLDSEVRPAHVHMAGRLISTSIISVDSNE
P43299______________KKKYEEYE---FQKDEEEQIARLAEDGDIYNKLSRSLAPEIYGHEDIKKALLLLLVGAPHRQLKDGMKIRGDVHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVMRDQVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLELAKHVLHVHQTEESPALGFEPLEPNI----LRAYISAARRLSPYVPAELEEYIATAYSSIRQEEAKSNTPHSY-TTVRTLLSILRISAALARLRFSESVAQSDVDEALRLMQMSKISLYADD

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
134	87		12		0.992554
135	87		12		0.992554
138	62		37		1.0
209	87		12		0.992554
219		87		12	0.992554
279		85		14	0.993533
301	11		88		0.923564
306	11		88		0.923564
429		40		60	1.0
555		85	14		0.993533
561	85			14	0.993533
565	14			85	0.993533
720		85		14	0.993533
722	85		14		0.993533
755	85			14	0.993533
756	85			14	0.993533
758		85	14		0.993533
759			14	85	0.993533
804		83		16	0.994512
853	80		20		0.995493
858	85			14	0.993533
1076		14		85	0.993533
1330			75	25	0.996473
1345			66	33	0.997452
1484		66		33	0.997452
1499	20			80	0.995493
1501	80		20		0.995493
1503	80		20		0.995493
1506	60		40		1.0
1529	80		20		0.995493
1591		14		85	0.993533
1638	71		14	14	0.984337
1639	85		14		0.993533
1640			14	85	0.993533
1641			14	85	0.993533
1904		80		20	0.995493
1950	14			85	0.993533
2010		33	66		1.0
2049	50		50		1.0
2051		16		83	0.994512
2065	50		50		1.0
2072	50			50	1.0
2087			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain