SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2162

Length: 2426 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2162
GAAAAGGAGAAGAAACGGAAAGAGAAGACAGAAGCACATCTTTATACTATTATTAAAGTGGCACGGGATGAAGATCTTGCAGATCAAATTGGGAAGGACATATATTTTGATCTTGTAGATCATGACAAGGTCCGAAGTTTTCGTGTGCAGAAGCAACAACCTTTTACCTCTTTCAAGGAAGAGGCGGCAAAGGAATTTGGAATTCCAGTACAGTATCTACGTTTTTGGTTGTGGGCTAAGCGACAAAACCATACGTATCGGCCCAATAGACCTCTAACACCATTAGAGGAGTCCCAATCAGTTGGTCACTTGAGGGAGGTTTCAAGTAAGGTGCAAAGTCCAGAGTTAAAATTGTTTATGGAAGTAAAGCATGGCCCGGATCTTTGCTTTCTTCCACCACCTGAAAAGAAGAAGGACGATATACTCCTTTTCTTCAAACTATATGATCCAGAGAAAGAATCACTGCGATATGTTGGAAGGAGTTTTGAGAAGTCTGGAGGTAAACCAGCAGACATTTTACTGAAACTTAATGAAATGGCTGGGTTTCCACCAGACACCGAAATTGAGCTTTATGAGGAAATTAAGTTTGAACCTTGTGTTATGTGTGAGCGTATTGACAAGAGAGTTCCTTTCCGAAATAGCCAGATTGAAGATGGAGATATTATTTGCTTTCAGAGGGTTCTCTCGACAGATGAGGAGGAACGGTATCGATATCCACATGTGCGGTTGTTTTTGGAGTATGTGCGTAACAGACAGATTGTTCATTTCCGGCGTCTGGATAAGCCAAAAGAAGATGATTTTTGTCTTGAACTGTCAAAGCTGGATTCTTATGATGATGTTGTTAAGAGGGTTGCAAATCAGCTTGGTTTAGATGATCCTTCAAAACTTAGGCTCACGCCACATAACTGTTATTCGCAGCAGCCAAAACCTCAACCAATCAAGCATCGAGGTGTTGACCACTTGAGTGATATGCTGGTGCATTACAATCAGATTTCGGATATATTGTATTATGAAGTACTGGATATACCACTTTCAGAGCTGCAAGGCTTGAAATCTTTAAAGGTTACATTTCACCATGCAATGAAAGATGAGATATCCGTGCATGTTATACGACTACCGAAACACAGCACTGTTGGTGATGTCCTAAATGAACTCAAAACAAAGGTGGAGCTATCAAACCCAAATGCAGAGCTTCGACTACTTGAGGTCTTCTACCACAAAATTTACAAGATTTTTTCTATAAATGAAAAGATTGAGAACATAAATGATCAGTATTGGACTTTGCGGGCAGAGGAGATCCCAGAAGAAGAGAGGAATCTGAGTCCAGGTGACAAGTTGATTCATGTTTACCATTTTAACAAGGATTCATCACAAAACCATATAATCCAGAACTTTGGAGAGCCTTTCTTTTTTGTTATTCATGAGGGTGAGATCTTATCAGAGGTTAAAGAACGAATCAAGAAGAAATTGCAGGTCCCTGATGAAGAATTTGCTAAGTGGAAGTTTGCATTCCTTTCCTTGGGTCGTCCTGAGTACCTTCAAGATACAGACATTGTACACCATCGTTTTCAGAGGCGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGGTTGGAGCATTCTGACAATACATCGAAGAGAATTCACCAAGTCAGCCAGAATCGCCATTCATTTGAGAGGTCTGTGAAGATATACAATTGAGAAGCAGGGATTGCTTATCCTGTAGCAATTCTCTTTTTATGGATGGGACTTGAGGTTGATTCATCTGTAATATAAATCATATGATAGTTTGGATGGATGTCCACACTTCTCTATGCTATAGAGTATTGGAGTGTTATAACAGAAGTATATTAGTTTCAGATCCAGCATGTGACAAAGATCAAGTTAAAATTGCGGTTCTATCCATCTCATTTTATGTTTGTGTAAAATGGAATTACAGGCTGCTTGTTGAGAAGGGTTTCAAATGGCATGTAATATTTAGATCTTAGCTTCTAATATGTTCTATACCAGAGCAAGCAACTGTATAGATTTAATACGTTTTGGAGGGAAATCTCCAAGTGAGTTGGATATTGTAGATTATTCGGAGACTATCACAATGTATCTATAGTACATGGGGTATTCTGAACTACTGTCCTGTACTTTTCACCATGTCGGTATTACAACAGCAGCTTGCTCACGTAGGATTGATCATCTGTACCATTATTAATTTGTTTTCTTTTGGGACACAAATTCCTTTGGCAAAATTTAAGCGTTGGGCCTGTGTTGCAATACATGCGTTTCCAGATGATTCTTCAGTCATATCTTATTTTGTGAACAACTACAGTTTGGTTTATGAGAGCATGTACTAAATCGAAATGTTATATGTACATAAATGTTATATGTACATATGTTGCGATTATTAGGGTGGAGAGCAGGAATCTGCGCTT

Ace file of the UniGene sp_v1.1_unigene2162

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15); K11838 ubiquitin carboxyl-terminal hydrolase 7 [EC:3.1.2.15]	-	-	76%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	ubiquitin carboxyl-terminal	-	-	85%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84WU2

Fln msg: your sequence is shorter than subject: 567 - 1115

Fln protein: EKEKKRKEKTEAHLYTIIKVARDEDLADQIGKDIYFDLVDHDKVRSFRVQKQQPFTSFKEEAAKEFGIPVQYLRFWLWAKRQNHTYRPNRPLTPLEESQSVGHLREVSSKVQSPELKLFMEVKHGPDLCFLPPPEKKKDDILLFFKLYDPEKESLRYVGRSFEKSGGKPADILLKLNEMAGFPPDTEIELYEEIKFEPCVMCERIDKRVPFRNSQIEDGDIICFQRVLSTDEEERYRYPHVRLFLEYVRNRQIVHFRRLDKPKEDDFCLELSKLDSYDDVVKRVANQLGLDDPSKLRLTPHNCYSQQPKPQPIKHRGVDHLSDMLVHYNQISDILYYEVLDIPLSELQGLKSLKVTFHHAMKDEISVHVIRLPKHSTVGDVLNELKTKVELSNPNAELRLLEVFYHKIYKIFSINEKIENINDQYWTLRAEEIPEEERNLSPGDKLIHVYHFNKDSSQNHIIQNFGEPFFFVIHEGEILSEVKERIKKKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVHHRFQRRDVYGAWEQYLGLEHSDNTSKRIHQVSQNRHSFERSVKIYN*

Protein Length: 568

Fln nts: GAAAAGGAGAAGAAACGGAAAGAGAAGACAGAAGCACATCTTTATACTATTATTAAAGTGGCACGGGATGAAGATCTTGCAGATCAAATTGGGAAGGACATATATTTTGATCTTGTAGATCATGACAAGGTCCGAAGTTTTCGTGTGCAGAAGCAACAACCTTTTACCTCTTTCAAGGAAGAGGCGGCAAAGGAATTTGGAATTCCAGTACAGTATCTACGTTTTTGGTTGTGGGCTAAGCGACAAAACCATACGTATCGGCCCAATAGACCTCTAACACCATTAGAGGAGTCCCAATCAGTTGGTCACTTGAGGGAGGTTTCAAGTAAGGTGCAAAGTCCAGAGTTAAAATTGTTTATGGAAGTAAAGCATGGCCCGGATCTTTGCTTTCTTCCACCACCTGAAAAGAAGAAGGACGATATACTCCTTTTCTTCAAACTATATGATCCAGAGAAAGAATCACTGCGATATGTTGGAAGGAGTTTTGAGAAGTCTGGAGGTAAACCAGCAGACATTTTACTGAAACTTAATGAAATGGCTGGGTTTCCACCAGACACCGAAATTGAGCTTTATGAGGAAATTAAGTTTGAACCTTGTGTTATGTGTGAGCGTATTGACAAGAGAGTTCCTTTCCGAAATAGCCAGATTGAAGATGGAGATATTATTTGCTTTCAGAGGGTTCTCTCGACAGATGAGGAGGAACGGTATCGATATCCACATGTGCGGTTGTTTTTGGAGTATGTGCGTAACAGACAGATTGTTCATTTCCGGCGTCTGGATAAGCCAAAAGAAGATGATTTTTGTCTTGAACTGTCAAAGCTGGATTCTTATGATGATGTTGTTAAGAGGGTTGCAAATCAGCTTGGTTTAGATGATCCTTCAAAACTTAGGCTCACGCCACATAACTGTTATTCGCAGCAGCCAAAACCTCAACCAATCAAGCATCGAGGTGTTGACCACTTGAGTGATATGCTGGTGCATTACAATCAGATTTCGGATATATTGTATTATGAAGTACTGGATATACCACTTTCAGAGCTGCAAGGCTTGAAATCTTTAAAGGTTACATTTCACCATGCAATGAAAGATGAGATATCCGTGCATGTTATACGACTACCGAAACACAGCACTGTTGGTGATGTCCTAAATGAACTCAAAACAAAGGTGGAGCTATCAAACCCAAATGCAGAGCTTCGACTACTTGAGGTCTTCTACCACAAAATTTACAAGATTTTTTCTATAAATGAAAAGATTGAGAACATAAATGATCAGTATTGGACTTTGCGGGCAGAGGAGATCCCAGAAGAAGAGAGGAATCTGAGTCCAGGTGACAAGTTGATTCATGTTTACCATTTTAACAAGGATTCATCACAAAACCATATAATCCAGAACTTTGGAGAGCCTTTCTTTTTTGTTATTCATGAGGGTGAGATCTTATCAGAGGTTAAAGAACGAATCAAGAAGAAATTGCAGGTCCCTGATGAAGAATTTGCTAAGTGGAAGTTTGCATTCCTTTCCTTGGGTCGTCCTGAGTACCTTCAAGATACAGACATTGTACACCATCGTTTTCAGAGGCGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGGTTGGAGCATTCTGACAATACATCGAAGAGAATTCACCAAGTCAGCCAGAATCGCCATTCATTTGAGAGGTCTGTGAAGATATACAATTGA___GAAGCAGGGATTGCTTATCCTGTAGCAATTCTCTTTTTATGGATGGGACTTGAGGTTGATTCATCTGTAATATAAATCATATGATAGTTTGGATGGATGTCCACACTTCTCTATGCTATAGAGTATTGGAGTGTTATAACAGAAGTATATTAGTTTCAGATCCAGCATGTGACAAAGATCAAGTTAAAATTGCGGTTCTATCCATCTCATTTTATGTTTGTGTAAAATGGAATTACAGGCTGCTTGTTGAGAAGGGTTTCAAATGGCATGTAATATTTAGATCTTAGCTTCTAATATGTTCTATACCAGAGCAAGCAACTGTATAGATTTAATACGTTTTGGAGGGAAATCTCCAAGTGAGTTGGATATTGTAGATTATTCGGAGACTATCACAATGTATCTATAGTACATGGGGTATTCTGAACTACTGTCCTGTACTTTTCACCATGTCGGTATTACAACAGCAGCTTGCTCACGTAGGATTGATCATCTGTACCATTATTAATTTGTTTTCTTTTGGGACACAAATTCCTTTGGCAAAATTTAAGCGTTGGGCCTGTGTTGCAATACATGCGTTTCCAGATGATTCTTCAGTCATATCTTATTTTGTGAACAACTACAGTTTGGTTTATGAGAGCATGTACTAAATCGAAATGTTATATGTACATAAATGTTATATGTACATATGTTGCGATTATTAGGGTGGAGAGCAGGAATCTGCGCTT

Fln Alignment:

sp_v1.1_unigene2162___AHLYTIIKVARDEDLADQIGKDIYFDLVDHDKVRSFRVQKQQPFTSFKEEAAKEFGIPVQYLRFWLWAKRQNHTYRPNRPLTPLEESQSVGHLREVSSKVQSPELKLFMEVKHGPDLCFLPPPEXXXXXXXXXXXXYDPEKESLRYVGRSFEKSGGKPADILLKLNEMAGFPPDTEIELYEEIKFEPCVMCERIDKRVPFRNSQIEDGDIICFQRVLSTDEEERYRYPHVRLFLEYVRNRQIVHFRRLDKPKEDDFCLELSKLDSYDDVVKRVANQLGLDDPSKLRLTPHNCYSQQPKPQPIKHRGVDHLSDMLVHYNQISDILYYEVLDIPLSELQGLKSLKVTFHHAMKDEISVHVIRLPKHSTVGDVLNELKTKVELSNPNAELRLLEVFYHKIYKIFSINEKIENINDQYWTLRAEEIPEEERNLSPGDKLIHVYHFNKDSSQNHIIQNFGEPFFFVIHEGEILSEVKERIKKKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVHHRFQRRDVYGAWEQYLGLEHSDNTSKRIHQVSQNRHSFERSVKIYN
Q84WU2______________AHLFTTIKVARDDDITEQIGKNIYFDLVDHEKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREASNKANNAELKLFLEIERGPDDLPIPPPEKTSEDILLFFKLYDPENAVLRYVGRLMVKSSSKPMDIVGQLNKMAGFAPDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIEESE-FRYPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYDDVVERVAEKLGLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHSATKDEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIYKIFPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAGQNQQVQNFGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
175		20		80	0.995493
176			20	80	0.995493
179	85		14		0.993533
180	85			14	0.993533
182	14		85		0.993533
183	85	14			0.993533
184	85	14			0.993533
185			85	14	0.993533
186	85			14	0.993533
190			85	14	0.993533
192		85		14	0.993533
193	85	14			0.993533
195	85	14			0.993533
196			85	14	0.993533
197		14	85		0.993533
603	25		75		0.996473
604			25	75	0.996473
714		75	25		0.996473
716	75		25		0.996473
838	88	11			0.923564
840		11	88		0.923564
884			12	87	0.992554
921		87		12	0.992554
2158		88	11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain