SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2055

Length: 2415 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2055
CGTCGTGACCTTGGCTGTGACTCTAACTATAGACTCTCCCGTGAAGGCTTAGGGTTTGTACTTCGACGCCCCTGGCTAGATAGATAGATAATTGGACATATTGATATGCTCACTACATATATTCATGGCGGCATGCCCATGAAAACCACGATCACGCTCTTCTCAATTTAAAACCCTCATACTCAGGTCTTTCCTGGCAAGTGGCCGGCTTCTGCATTCGACTCAGCCAAAGGTTTTGAATTTTACGGTGACAGAATCGGCATTTTTTTTGTGGATTTTGGTGGAGCCGAGAAAGCACATGCAGTTTTTCGTATATTTTCTCAGCGAAGGCAGATAAAATTAGTAAGTTATAGATTGGGTTAGCAGGGAAACTTTAGGATCTAAAAATGTCGGGATACGACGGGAGGTATGAAGGAAACGGTGAGGGTTACGATGAATGGGGTTCTTCTCCTCGCGCTAAAGAAGAATACCGGGAATCTTCTCCGTACGATGCTTTTGACGAGAGAGACACGCAACGCCAGCATTCCTTGCGTGATCCAGAAAGAGAACGCCACAGGAGCAAAGAAAAGGACAGGGACAGGGAAAGAGAGAGAGAAAGGGACAGGGATCGACATCATAGAGATCACTATAGAGACAGAACTGAGAGGGATGACAGGGGTAGAGGGCGAACTGAAGATCGTGAGCGACATAGAAGTCATGATTATGATAGGCACAGAGATCATGATCGCGACAGAGAGAGAAGGCACAGGCACAGATCACGCTCTCCTTCAAGGGGTAAATCAAGGCATCGCTCCAAGTCTCGTTCACGCTCACCCTCTAGAAGCAAACGGACAAGTGGTTTTGACATGGCACCACCTGGTGCTGCCATGATACCTGGAACGGCAGTCCCAGGTCAAACCACTGGAATGTCGCAGACAATGCCTGGAATGTTTCCTAATATGTTCCCCTTTGGGAATGCACAGTTTGGAGGTCTTCCCGTGATGCCAGTGCAAGCAATGACACAACAGGCAACTCGTCATGCCCGACGGGTATATGTTGGTGGTCTTCCACCAATGGCTAATGAGCAGACAATTGCTACATATTTTAGTCGCGTTATGGCTGCTATAGGAGGAAATACTGCTGGGCCAGGTGATGCTGTTGTTAATGTCTACATCAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGCGCACAGTTGAAGAGGCCAGCAATGCAATGGCTCTTGATGGTATAATGTTTGAGGGCGTTTCTGTGAGAGTGAGGAGACCAAGTGATTACAATCCCTCATTGGCAGCAGCACTTGGCCCAAGCCAACCCAGTCCCCACCTAAATTTAGCTGCTGTTGGTCTCACACCAGGTGCTGTTGGAGGAGCTGAGGGACCTGATAGAATATTTGTTGGTGGCTTACCGTATTACTTCACTGAAGCACAGATAAGAGAACTGCTTGAATCCTTTGGGCCTCTTCGTGGTTTTGATCTCGTTAAGGATAGAGATACGGGTAATTCAAAGGGCTATGGCTTTTGTGTTTACCAGGATCCAGCTGTGACAGACATTGCATGTGCTGCTCTTAATGGGCTTAAAATGGGTGATAAGACTTTGACTGTGCGCCGTGCTACTGCCAGTGGTCAGCCAAAACCAGACCAGGAGAATGTCTTAGCACAGGCTCAACAGCATATAGCTTTACAGAAGCTTGCACTGCAAGTTGGAAGTGGTGTACCTGGTTTGTTTCCAGCTCTTGGCCCCCCAGAAACACCTACAAAAGTTGTTTCCTTGACACAGGTTGTGTCAGCAGATGAGCTGAGGGATGATGAAGAGTATGAGGAGATACTAGAAGACATGAGAGAAGAATGTGGAAAATATGGATCAATAGTAAATCTTGTTATCCCCCGTCCTGATCCAAGTGGAGAATCACGTCCTGGGGTTGGAAAGGTGTTTGTGGAATTTTCGGATACTGAAAGTTCTGGCAAGGCAAAAGCTGCGCTGAATGGAAGGAAGTTCGGTGGGAATACTGTTGTTGCAATATATTACCCGGAAGACAAATTCTCTATGGGTGAATACGATTGAAGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGCCTGTTACACCCCCCTTTCTGTATATTATGGATTTGCTTAATGATGGGGTGATTATTAAGAGCAGTTTTGTATATTAGAGCTTTCATGATTGACAGAAAATTCTATGCTACACTTATTGCATGCAATATTTTATGATATTCCTTGTTTTATTCTGTATTAGGCAAAAATTGGCATTTGGATAAATACCAATGGCTTGGACCTAATCTTTGCCTCTCTGTTGAAGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGACCTAAAGTT

Ace file of the UniGene sp_v1.1_unigene2055

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U2 snRNP auxiliary factor large subunit, putative; K12837 splicing factor U2AF 65 kDa subunit	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	protein	-	-	84%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	84%
Blast2go	RNA recognition motif domain, eukaryote	IPR003954	-	84%
Blast2go	U2 snRNP auxilliary factor, large subunit, splicing factor	IPR006529	-	84%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1T0

Fln msg: your sequence is longer than subject: 559 - 347

Fln protein: MSGYDGRYEGNGEGYDEWGSSPRAKEEYRESSPYDAFDERDTQRQHSLRDPERERHRSKEKDRDRERERERDRDRHHRDHYRDRTERDDRGRGRTEDRERHRSHDYDRHRDHDRDRERRHRHRSRSPSRGKSRHRSKSRSRSPSRSKRTSGFDMAPPGAAMIPGTAVPGQTTGMSQTMPGMFPNMFPFGNAQFGGLPVMPVQAMTQQATRHARRVYVGGLPPMANEQTIATYFSRVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIMFEGVSVRVRRPSDYNPSLAAALGPSQPSPHLNLAAVGLTPGAVGGAEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQPKPDQENVLAQAQQHIALQKLALQVGSGVPGLFPALGPPETPTKVVSLTQVVSADELRDDEEYEEILEDMREECGKYGSIVNLVIPRPDPSGESRPGVGKVFVEFSDTESSGKAKAALNGRKFGGNTVVAIYYPEDKFSMGEYD*

Protein Length: 560

Fln nts: CGTCGTGACCTTGGCTGTGACTCTAACTATAGACTCTCCCGTGAAGGCTTAGGGTTTGTACTTCGACGCCCCTGGCTAGATAGATAGATAATTGGACATATTGATATGCTCACTACATATATTCATGGCGGCATGCCCATGAAAACCACGATCACGCTCTTCTCAATTTAAAACCCTCATACTCAGGTCTTTCCTGGCAAGTGGCCGGCTTCTGCATTCGACTCAGCCAAAGGTTTTGAATTTTACGGTGACAGAATCGGCATTTTTTTTGTGGATTTTGGTGGAGCCGAGAAAGCACATGCAGTTTTTCGTATATTTTCTCAGCGAAGGCAGATAAAATTAGTAAGTTATAGATTGGGTTAGCAGGGAAACTTTAGGATCTAAAA_-_ATGTCGGGATACGACGGGAGGTATGAAGGAAACGGTGAGGGTTACGATGAATGGGGTTCTTCTCCTCGCGCTAAAGAAGAATACCGGGAATCTTCTCCGTACGATGCTTTTGACGAGAGAGACACGCAACGCCAGCATTCCTTGCGTGATCCAGAAAGAGAACGCCACAGGAGCAAAGAAAAGGACAGGGACAGGGAAAGAGAGAGAGAAAGGGACAGGGATCGACATCATAGAGATCACTATAGAGACAGAACTGAGAGGGATGACAGGGGTAGAGGGCGAACTGAAGATCGTGAGCGACATAGAAGTCATGATTATGATAGGCACAGAGATCATGATCGCGACAGAGAGAGAAGGCACAGGCACAGATCACGCTCTCCTTCAAGGGGTAAATCAAGGCATCGCTCCAAGTCTCGTTCACGCTCACCCTCTAGAAGCAAACGGACAAGTGGTTTTGACATGGCACCACCTGGTGCTGCCATGATACCTGGAACGGCAGTCCCAGGTCAAACCACTGGAATGTCGCAGACAATGCCTGGAATGTTTCCTAATATGTTCCCCTTTGGGAATGCACAGTTTGGAGGTCTTCCCGTGATGCCAGTGCAAGCAATGACACAACAGGCAACTCGTCATGCCCGACGGGTATATGTTGGTGGTCTTCCACCAATGGCTAATGAGCAGACAATTGCTACATATTTTAGTCGCGTTATGGCTGCTATAGGAGGAAATACTGCTGGGCCAGGTGATGCTGTTGTTAATGTCTACATCAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGCGCACAGTTGAAGAGGCCAGCAATGCAATGGCTCTTGATGGTATAATGTTTGAGGGCGTTTCTGTGAGAGTGAGGAGACCAAGTGATTACAATCCCTCATTGGCAGCAGCACTTGGCCCAAGCCAACCCAGTCCCCACCTAAATTTAGCTGCTGTTGGTCTCACACCAGGTGCTGTTGGAGGAGCTGAGGGACCTGATAGAATATTTGTTGGTGGCTTACCGTATTACTTCACTGAAGCACAGATAAGAGAACTGCTTGAATCCTTTGGGCCTCTTCGTGGTTTTGATCTCGTTAAGGATAGAGATACGGGTAATTCAAAGGGCTATGGCTTTTGTGTTTACCAGGATCCAGCTGTGACAGACATTGCATGTGCTGCTCTTAATGGGCTTAAAATGGGTGATAAGACTTTGACTGTGCGCCGTGCTACTGCCAGTGGTCAGCCAAAACCAGACCAGGAGAATGTCTTAGCACAGGCTCAACAGCATATAGCTTTACAGAAGCTTGCACTGCAAGTTGGAAGTGGTGTACCTGGTTTGTTTCCAGCTCTTGGCCCCCCAGAAACACCTACAAAAGTTGTTTCCTTGACACAGGTTGTGTCAGCAGATGAGCTGAGGGATGATGAAGAGTATGAGGAGATACTAGAAGACATGAGAGAAGAATGTGGAAAATATGGATCAATAGTAAATCTTGTTATCCCCCGTCCTGATCCAAGTGGAGAATCACGTCCTGGGGTTGGAAAGGTGTTTGTGGAATTTTCGGATACTGAAAGTTCTGGCAAGGCAAAAGCTGCGCTGAATGGAAGGAAGTTCGGTGGGAATACTGTTGTTGCAATATATTACCCGGAAGACAAATTCTCTATGGGTGAATACGATTGA___AGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGCCTGTTACACCCCCCTTTCTGTATATTATGGATTTGCTTAATGATGGGGTGATTATTAAGAGCAGTTTTGTATATTAGAGCTTTCATGATTGACAGAAAATTCTATGCTACACTTATTGCATGCAATATTTTATGATATTCCTTGTTTTATTCTGTATTAGGCAAAAATTGGCATTTGGATAAATACCAATGGCTTGGACCTAATCTTTGCCTCTCTGTTGAAGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGACCTAAAGTT

Fln Alignment:

sp_v1.1_unigene2055___RVYVGGLPPMANEQTIATYFSRVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAMA-LDGIMFEGVSVRVRRPSDYNPSLAAALGPSQPSPHLNLAAVGLTPGAVGG-AEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA
A9P1T0______________KLYVGNLPFDIDSEGLAKMFDE---------SGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEV--PRLQNGRSPAR------------SPSNFGGFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVA

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
116	25	75			0.996473
118		75	25		0.996473
119	75		25		0.996473
120		75	25		0.996473
121			25	75	0.996473
170		20		80	0.995493
174			20	80	0.995493
204		14	85		0.993533
205	14	85			0.993533
233	12		87		0.992554
568	85		14		0.993533
578	80	20			0.995493
580	80			20	0.995493
581			80	20	0.995493
582		20	80		0.995493
587	20		80		0.995493
588			80	20	0.995493
591	75		25		0.996473
592	75			25	0.996473
595		25	75		0.996473
600	75	25			0.996473
601		25	75		0.996473
734	11		88		0.923564
883	20		80		0.995493
954		85		14	0.993533
1534		10		90	0.90298
1545		90		10	0.90298
1553		90		10	0.90298
1719	89	10			0.999919
1722		11		88	0.999937
1726	88	11			0.999937
1727		11	88		0.999937
1986	50		50		1.0
2192			66	33	1.0
2193			16	83	0.994512
2194	16		83		0.994512
2279	80		20		0.995493
2415	14	85			0.993533
2417		14		85	0.993533
2419	16			83	0.994512
2420	16		83		0.994512
2421	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
77	90	TAGA TAGA TAGA TA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain