SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2010

Length: 3198 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2010
GCAGTCTCAGAAGCCGTCGTGACCTTGGCTGTCATGGGGACATATGCATTAGCTGACTATCTGAGATCAATTCCTTCCCATCTTTCTCAGAAGGCCGCCGCTCAGCTTCTTAGAGTTCGAAGTCATGGATTCCGATCCTTCAACACCTGGGTCTCCGACGTCTGGACCAGGGTTTAGTACCGATCGTCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACAGTCAATATCTGATGAAGCGGAAGTTGATCCGGACATTTTGGGAGAAGATCCGGGCGATGAAGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTTATTCAGCAAGATTACCAGCGTCTAGAAGGCCAAGATCGGTACGAGTCTGTGGACTTGGACGATGAATACCAAGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGCTGAGCTTGATGCAAGGCATGGTGTTAGTGTGAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTTAGGCCACGGCGAAGGGCACGTGTTGAGCCTCCAGTTACTGACCAAACTGAAGAGGAGCCTTATGAGGAGGAAGAAGACGAAGAGGGTGAATATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTTCGGCGTTTCATAGCCAAAAAGTTCAGACAGTTTTTACTCAGCTATGTGAACCAAAGAAGTGGAAATGGTGAACGTGAATATATTCGGCTGATCAATGAGATGGTTGCTGCAAACAAGTGTAGCTTGGAGATTGATTATAAGCAGTTCATCTTTACACATCCAAACATTGCCATCTGGCTAGCTGATGCCCCTCAATCCGTGCTTGAAGTGATGGAAGAAGTGGCTTTAAATGTTGTGTTGAATCTACATCCAAATTATAGAAACATTCATGATAAAATCTATGTTCGAATTACAAATCTGCCAGTTTATGATCAGATACGTAATATAAGGCAGGTGCATTTGAATACTATGATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTCCCTCAACTGCAGCAAGTCAAATATGATTGTAATAAATGTGGCACTGTGCTAGGACCTTTCTTTCAGAACTCTTATTCTGAAGTGAAAGTAGGTTCTTGTCCTGAATGCCAGTCGAAGGGGCCATTTACAGTTAACATTGAACAGACAATATATAGGAACTATCAGAAATTATCACTTCAAGAAAGTCCGAGTATTGTGCCTGCTGGTCGGCTCCCAAGGTACAAAGAAGTCATTCTCTTGAACGATCTCATTGATTGTGCACGTCCTGGAGAAGAAATTGAGGTGACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTTTGCAACAGTTGTTGAAGCTAACTACGTTACAAAGAAACAAGACTTATTTTCTGCATATAAACTGACTGATGAGGATAAAGCAGAAATTGAAAAGCTTTCGAAAGATCCCCGAATTGGAGAACGGATTATAAAATCTATAGCTCCATCTATTTATGGTCATGAAGACATTAAGACTGGAATAGCTCTTGCAATGTTTGGAGGCCAAGAAAAGAATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTCCTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTGAGAAAACAGCTCAGAGGGCTGTATATACAACAGGGAAGGGTGCCTCAGCAGTTGGGCTCACAGCGGCAGTCCATAAAGATCCCGTGACACAGGAATGGACTTTAGAAGGTGGTGCATTGGTCCTTGCTGACAGGGGTGTTTGTTTGATTGATGAGTTTGACAAAATGAATGACCAGGACAGGGTGAGTATCCACGAAGCTATGGAACAGCAGAGCATCAGCATATCCAAGGCTGGAATTGTGACATCTTTACAAGCGCGGTGTTCTGTGATTGCAGCGGCCAATCCCATAGGGGGCAGGTATGACTCGTCGAAAACGTTTTCTCAAAACGTGGAGCTCACTGATCCTATTCTCTCCCGTTTTGATGTCCTCTGTGTTGTGAAGGATGTTGTTGATCCAGTTAGAGATGAAATGCTTGCAACCTTTGTTGTTGACAGTCACGCTAAGTCCCAGCCTAAAGGTTCTAACATAGAGGAAACACCTGCAGGCCTTTCTCAGGATGAATCCTCCAATTTGAACCATTCTTCCGATCCAGAGGTCTTATCTCAAGATACATTGAGGAAGTATATTACATATGCCAAGCTTAACGTGTTCCCAAAATTACATGATGTGGATTTGGAAAAGTTGACACATGTATACGCAGATCTGCGGCGTGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCATATTGAGTCAATGATAAGAATGTCTGAAGCCCATGCTAGAATGCATCTTAGAAATTATGTTGCTGAAGAGGATGTAGACATGGCCATTAGAGTCCTCTTAGATTCATTCATTTCAACTCAGAAGTATGGAGTTCAGAAAGCCCTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCTGCATCTTCTACGTGGACTTGTCAAGGATGTCTTGCGTCTTGAAGAACTGATGTCTGGGACTAGACCCCGTCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAGGAACAAGGCACAAGAGTATGAAATTTATGATCTGAAACCATTCTTCATCAGTAGACAATTCGCAAGGGCTAATTTTACACTGGACGAGGCAGAGGGAATTATAAAACATCCAATTGCTTGACGAGGGGCTTGAATATTATTTGATCTTGTCCTTTTATTACATGTATAATATTAAATCGCTCTTTGCGTCCTTTCCTATTGATGGATTTAGAATCCTAGCAGTGGAAGGTGCTGATAATGCCAAATTAATTGCCCTTAGTCTATTAGGGCATAGAGCTCCTGGAAATGTAATGGCTCCCCATTATTAAGTTTTCCGCCGTGAGAAACATTTGTGTTTATGGTTCAAAATTTTCCGTTGTCTCACATATGTACCGCTTCCAAGTCTTTCAAAGTGTCTTCTCTAGTGCTTTGCCAACTGAAAATTTCTACCATATTTTCTTCATGCATATGGAGGTAGGGCCGCTC

Ace file of the UniGene sp_v1.1_unigene2010

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	78%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	83%
Blast2go	embryo development	GO:0009790	Biological Process	83%
Blast2go	regulation of cell proliferation	GO:0042127	Biological Process	83%
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	83%
Blast2go	binding	GO:0005488	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Blast2go	Mini-chromosome maintenance, DNA-dependent ATPase	IPR001208	-	83%
Blast2go	Mini-chromosome maintenance complex protein 2	IPR008045	-	83%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	83%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	83%
Blast2go	Mini-chromosome maintenance, conserved site	IPR018525	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B8BKI8

Fln msg: your sequence is shorter than subject: 910 - 961

Fln protein: MDSDPSTPGSPTSGPGFSTDRLPPTSSSRHRSSTQSISDEAEVDPDILGEDPGDEEDEGEGEDLYNDNFIQQDYQRLEGQDRYESVDLDDEYQDERGYDEIMADRRAAEAELDARHGVSVNRKLPRILRDQDTDDEIEFRPRRRARVEPPVTDQTEEEPYEEEEDEEGEYEMYNVQGTLREWVTRDEVRRFIAKKFRQFLLSYVNQRSGNGEREYIRLINEMVAANKCSLEIDYKQFIFTHPNIAIWLADAPQSVLEVMEEVALNVVLNLHPNYRNIHDKIYVRITNLPVYDQIRNIRQVHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTVLGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNYQKLSLQESPSIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGTYTNNFDMSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTDEDKAEIEKLSKDPRIGERIIKSIAPSIYGHEDIKTGIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTAQRAVYTTGKGASAVGLTAAVHKDPVTQEWTLEGGALVLADRGVCLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPILSRFDVLCVVKDVVDPVRDEMLATFVVDSHAKSQPKGSNIEETPAGLSQDESSNLNHSSDPEVLSQDTLRKYITYAKLNVFPKLHDVDLEKLTHVYADLRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRNYVAEEDVDMAIRVLLDSFISTQKYGVQKALQKSFKKYITYKKDYNELLLHLLRGLVKDVLRLEELMSGTRPRLNQVEIKVEDLRNKAQEYEIYDLKPFFISRQFARANFTLDEAEGIIKHPIA*

Protein Length: 911

Fln nts: GCAGTCTCAGAAGCCGTCGTGACCTTGGCTGTCATGGGGACATATGCATTAGCTGACTATCTGAGATCAATTCCTTCCCATCTTTCTCAGAAGGCCGCCGCTCAGCTTCTTAGAGTTCGAAGTC_-_ATGGATTCCGATCCTTCAACACCTGGGTCTCCGACGTCTGGACCAGGGTTTAGTACCGATCGTCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACAGTCAATATCTGATGAAGCGGAAGTTGATCCGGACATTTTGGGAGAAGATCCGGGCGATGAAGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTTATTCAGCAAGATTACCAGCGTCTAGAAGGCCAAGATCGGTACGAGTCTGTGGACTTGGACGATGAATACCAAGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGCTGAGCTTGATGCAAGGCATGGTGTTAGTGTGAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTTAGGCCACGGCGAAGGGCACGTGTTGAGCCTCCAGTTACTGACCAAACTGAAGAGGAGCCTTATGAGGAGGAAGAAGACGAAGAGGGTGAATATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTTCGGCGTTTCATAGCCAAAAAGTTCAGACAGTTTTTACTCAGCTATGTGAACCAAAGAAGTGGAAATGGTGAACGTGAATATATTCGGCTGATCAATGAGATGGTTGCTGCAAACAAGTGTAGCTTGGAGATTGATTATAAGCAGTTCATCTTTACACATCCAAACATTGCCATCTGGCTAGCTGATGCCCCTCAATCCGTGCTTGAAGTGATGGAAGAAGTGGCTTTAAATGTTGTGTTGAATCTACATCCAAATTATAGAAACATTCATGATAAAATCTATGTTCGAATTACAAATCTGCCAGTTTATGATCAGATACGTAATATAAGGCAGGTGCATTTGAATACTATGATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTCCCTCAACTGCAGCAAGTCAAATATGATTGTAATAAATGTGGCACTGTGCTAGGACCTTTCTTTCAGAACTCTTATTCTGAAGTGAAAGTAGGTTCTTGTCCTGAATGCCAGTCGAAGGGGCCATTTACAGTTAACATTGAACAGACAATATATAGGAACTATCAGAAATTATCACTTCAAGAAAGTCCGAGTATTGTGCCTGCTGGTCGGCTCCCAAGGTACAAAGAAGTCATTCTCTTGAACGATCTCATTGATTGTGCACGTCCTGGAGAAGAAATTGAGGTGACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTTTGCAACAGTTGTTGAAGCTAACTACGTTACAAAGAAACAAGACTTATTTTCTGCATATAAACTGACTGATGAGGATAAAGCAGAAATTGAAAAGCTTTCGAAAGATCCCCGAATTGGAGAACGGATTATAAAATCTATAGCTCCATCTATTTATGGTCATGAAGACATTAAGACTGGAATAGCTCTTGCAATGTTTGGAGGCCAAGAAAAGAATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTCCTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTGAGAAAACAGCTCAGAGGGCTGTATATACAACAGGGAAGGGTGCCTCAGCAGTTGGGCTCACAGCGGCAGTCCATAAAGATCCCGTGACACAGGAATGGACTTTAGAAGGTGGTGCATTGGTCCTTGCTGACAGGGGTGTTTGTTTGATTGATGAGTTTGACAAAATGAATGACCAGGACAGGGTGAGTATCCACGAAGCTATGGAACAGCAGAGCATCAGCATATCCAAGGCTGGAATTGTGACATCTTTACAAGCGCGGTGTTCTGTGATTGCAGCGGCCAATCCCATAGGGGGCAGGTATGACTCGTCGAAAACGTTTTCTCAAAACGTGGAGCTCACTGATCCTATTCTCTCCCGTTTTGATGTCCTCTGTGTTGTGAAGGATGTTGTTGATCCAGTTAGAGATGAAATGCTTGCAACCTTTGTTGTTGACAGTCACGCTAAGTCCCAGCCTAAAGGTTCTAACATAGAGGAAACACCTGCAGGCCTTTCTCAGGATGAATCCTCCAATTTGAACCATTCTTCCGATCCAGAGGTCTTATCTCAAGATACATTGAGGAAGTATATTACATATGCCAAGCTTAACGTGTTCCCAAAATTACATGATGTGGATTTGGAAAAGTTGACACATGTATACGCAGATCTGCGGCGTGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCATATTGAGTCAATGATAAGAATGTCTGAAGCCCATGCTAGAATGCATCTTAGAAATTATGTTGCTGAAGAGGATGTAGACATGGCCATTAGAGTCCTCTTAGATTCATTCATTTCAACTCAGAAGTATGGAGTTCAGAAAGCCCTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCTGCATCTTCTACGTGGACTTGTCAAGGATGTCTTGCGTCTTGAAGAACTGATGTCTGGGACTAGACCCCGTCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAGGAACAAGGCACAAGAGTATGAAATTTATGATCTGAAACCATTCTTCATCAGTAGACAATTCGCAAGGGCTAATTTTACACTGGACGAGGCAGAGGGAATTATAAAACATCCAATTGCTTGA___CGAGGGGCTTGAATATTATTTGATCTTGTCCTTTTATTACATGTATAATATTAAATCGCTCTTTGCGTCCTTTCCTATTGATGGATTTAGAATCCTAGCAGTGGAAGGTGCTGATAATGCCAAATTAATTGCCCTTAGTCTATTAGGGCATAGAGCTCCTGGAAATGTAATGGCTCCCCATTATTAAGTTTTCCGCCGTGAGAAACATTTGTGTTTATGGTTCAAAATTTTCCGTTGTCTCACATATGTACCGCTTCCAAGTCTTTCAAAGTGTCTTCTCTAGTGCTTTGCCAACTGAAAATTTCTACCATATTTTCTTCATGCATATGGAGGTAGGGCCGCTC

Fln Alignment:

sp_v1.1_unigene2010___YNDNFIQQDYQRLEGQDRYESVDLDDEYQDERGYDEIMXXXXXXXXXXXXXH---GVSVNRKLPRILRDQDTDDXXXXXXXXXXXXXXX------------------------------------VTDQTXXXXXXXXXXXXXXXXXXNVQGTLREWVTRDEVRRFIAKKFRQFLLSYVNQRSGNGEREYIRLINEMVAANKCSLEIDYKQFIFTHPNIAIWLADAPQSVLEVMEEVALNVVLNLHPNYRNIHDKIYVRITNLPVYDQIRNIRQVHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGTVLGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNYQKLSLQESPSIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGTYTNNFDMSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTDEDKAEIEKLSKDPRIGERIIKSIAPSIYGHEDIKTGIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTAQRAVYTTGKGASAVGLTAAVHKDPVTQEWTLEGGALVLADRGVCLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPILSRFXXXXXXXXXXXXXXXEMLATFVVDSHAKSQPKGSNIEETPAGLSQDESSNLNHSSDPEVLSQDTLRKYITYAKLNVFPKLHDVDLEKLTHVYADLRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRNYVAEEDVDMAIRVLLDSFISTQKYGVQKALQKSFKKYITYKKDYNELLLHLLRGLVKDVLRLEELMSGTRPRLNQVEIKVEDLRNKAQEYEIYDLKPFFISRQFARANFTLDEAEGIIKHPIA
B8BKI8______________FNDNYLD-DYRRMDEQDQYESVGLDDSIEDERNLDEIMADRRAAEAELDARDVRTGAAPDRKLPRMLHDQDTDEDMSFRRPKRHRANFRPPREPRTPRSDDDGDGATPSSPGRSQRGMYSGGDVPMTDQTDDDPYEDEFDEEDEMNMYRVQGTLREWVTRDEVRRFIAKKFKEFLLTYVNPKNEQGEFEYVRLINEMVLANKCSLEIDYKQFIYIHPNIAIWLADAPQSVIEVMEEVAKNVVFDLHKNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCSKCGTVLGPFFQNSYTEVKVGSCPECQSKGPFTINVEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVAKKQDLFSAYKLTDEDKAEIEKLAKDPRIGERIVKSIAPSIYGHEDIKTAIALAMFGGQEKNVKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGHRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDVLCVVKDIVDPFTDEMLARFVVDSHARSQPKGANLEDRVPTDVEDDPLAAARQADPDILSQDMLKKYITYAKLNVFPKIHDADLDKISHVYAELRRESSHGQGVPIAVRHIESIIRMSEAHARMHLRSYVSQEDVDMAIRVLLDSFISTQKFGVQKALQKNFRKYMTYKKDYNELLLLLLRTLVKDVLHFEEIVSGPTTRLTHIEVKVEDLKNKAQEYEIYDLRPFFSSAHFRDNNFVLDEGRGIIRHPLA

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
888		88		11	0.923564
947	87		12		0.992554
948		12		87	0.992554
951	75			12	0.975346
952	87		12		0.992554
954		90	10		0.90298
955	90			10	0.90298
956			10	90	0.90298
957	10			90	0.90298
960			10	90	0.90298
962	88	11			0.923564
963		10		90	0.90298
972		10		90	0.90298
975			10	90	0.90298
976		90		10	0.90298
979	90	10			0.90298
982	90		10		0.90298
983		90	10		0.90298
984	90	10			0.90298
985	90			10	0.90298
986	90		10		0.90298
989	10			90	0.90298
990		10	90		0.90298
991		90		10	0.90298
1000	10		90		0.90298
1039	86		13		0.999973
1043		13		86	0.999973
1199	62		37		1.0
1707	80	20			0.995493
2107		80	20		0.995493
2303	50		50		1.0
2346			20	80	0.995493
2349	20		20		0.99255
2511	81		18		0.999994
2864		10	90		0.90298
2866			90	10	0.90298
2868			10	90	0.90298
2875			18	81	0.999994
3155		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain