SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1945

Length: 2768 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1945
CGTCGTGACCTTGGCTGTCACTCAATTATGCGAGTTTCATCGGCCGTCTTCGCTTTCCTTCCCGTAATATCCCACTCCTGAATATTTATTTTCATGTCCATCAGGCCCTCAAGCGCTGTACGATCCACTGCTCGCTCTGAAGATCATAATTCCACTTCAACCCCCATCGGCCATGGACGCAAGCTACACAGCATACGGGCCGGAGTCGGACCCGACAGTGCCCCGGAACCGGCTTACACGGCAACGGTGGATGAGGTCTCGGACATCCGCCGCGAATTCCTACCGACTTCAACGACCGCAGTAGCAGAATCTATGACTGCAGTCTTCGAAGATTTCCAGCACTTGTCCAGGCAACATGGAGAGTTTCCTAAGGAGTTTGTGGCAAGAGGTGGAAATACAAGGGAACAAAATGACCTTGACCATCAATCTTCTAGAAGTCATCCTGCATGCTCGGGTGGTTTGTCCACAACATTCAGAATGGCCGAGTCACTTAATGGGAGCTCACCAGCTGCAGAGGTACGGAGATATGTTGATCAACAAAATACAGGTACCAATGCTTCACTGGCTACAAATGCAATAAGAAGAGGAAGGAAAGGTCAGACGTTGAATGGTAATCACTTGCTAAATTTTTATTCTGATCCAATTCCTCGTGCTCCTCGTGGTCCGCCGAGAAATCTGCCACCTAGGAGACAACAGCGAATAAAACCCTATAATAAGGATCTATTTTTGCAGGCAAACTTCAGATTTCTAGTGTCTGGTATGGGGGACTATATGTTGAATTCAAGCAATCCAGATAAAATGTTACAATGGGAAGATGTTGCTGCTGTAAATTTTTCCACTCCTAACCATGTACAGTGTCCTATTTGTTTGGACAGCCCTCCATTGTGTCCTCAAATAACAACCTGTGGTCACATCTTTTGTTTTCCTTGTATTCTACGGTATTTGATGATGGGAGAAGGGGATCACAAAGGTGACAATTGGGAGAAGTGCCCCCTCTGCTCTGTTATGATTTCATGTAAGGATCTTCATACCGTTTGCATTGGTAATGTAAAACACTATGATGTTGGGAAACATATTGACTTCACACTTTTAACAAGGGCAAAAAATTCTGTCATTCCTTTTGAAAAGAATCAGTATTCTCTGGGTGCTTTGCCTCACAGTATAGATGGTCAGTGTAATGCCTTTTCAAGGTTTACTCTAACATATGATCCAGAGTTATCTGCAAGCAAGGCAGCACTCGAGCTTACTAGATGGATTGAGAAAGTAGAGTCTGAAGGGGGTGAAGATCTGGAGTCACTCCCTTATGTGTATGCAGCGAGAGATCAATTAGAAGAAAGGAAAAAGGCATGGACTGAACGTCGTGCCTCAGAATATCTCAGTGGTAGTCCCCCACTGAAACAACAGCTTATGGCTGATGCTAAATCAGGGTCCGGTAAACTTAAGATTGACAGTTTTGATTCAGTAAAGGAGGATGATCCGTCAGAACCACAAGGTGTTCAGGGACACCTTTCTAAGTGTGACGATAAAAGGGAATTGGATAAAGCATCAGGTAAGCTTAAAGAAATTAAAAATTTGGAAGATATGGAGTTCAAACATCAAAATGAAAACACAGAGCCTGTGGACGAGGAGTCATATTCTTTCTATCAGTCAGCTGATGGACAATTTCTCATCCTTCATCCCTTAAATATGAAATGCCTCCTTCACCATTATGGGAGCCATAATTTGCTACCATCCAGAATTGGTGGCAAAATTTTACAACTAGATTCACTTGCACAAACAGAAGCCATTAGAAAGCGCTATCGATATTTGAGCCATTTCCCTTTGACTACAACATTTCAGTTGTGTGAGATTGATCTAAGTGACCTTTTACCTCCTAGTGCATTTGTTCCATTTACTGATGAGATTGAGAAACGGAAAGCTGAACGTCGTCGTCGTCAAAAGCAGGAAGCTAGAGCTAAGAGGCTGGATTCAGCAGTGGCAGTCCAAGCAAGACCTGTTCTACCAGAGTCCACTTATGTCAGTAATGATGACAAGCCGCCATCAAGCGCTGATTTTGAAGCTTTAGGGGAACCAAAAAATGCATCTGTGAGTTCTCCAGTATTGAATGAGCGGAAGCTGTTTTCACATGTCACACGACTTGGATTTGCTGCTGGGTATGATTCTCCAGCTCTTAAGGAAGGCCCATCTGAAGAGTTGACCCCGGATTCAATGGATGCTGCTTCAAATAGCATTAATATGGGAAGAGCAGGTGTTTCTGCAGATGGTGGTACAAGCAGTTCGTCCTCTATGTCATTTGCAGATATTATAGCAGCCCCAAAACCCAGCGGGCAAGAATGTAGTAGGCAGATATCCAAGTCTCAAAATTCTGGGAAAAAGGGCAAGAAAGCTACCAAGGTTCTTCTCTCTACAGCAGGTGGAAGAAGGTATTGATTCGGTGTAAATTTTTAAGACATGTATTATTAGTGTCCACTGCATCAAAGTTTGGCTTCTTGATATTTAAATTCTTCCCTTGCAACTCTCAGTTTTTCACTTCCAGAAATTTCTTGGTATTAGAATTTAAATTTATGCCGTTCTGTGCACTTGTGTGCTCTTAAGATCCTTTGGAGAACAGAACCTAGGGATTGAAGTCCACAACATTTGGTATATGGTTGTCAATGTTGTACATTTTGTTCTGTAATTTGCTTATCGAGAGTAAGATATCTACGCATTACACATTATTTTCTGAATAAAAGGCTTCGAAAACTGAAATTCCCATTTGGTTAAAAAAA

Ace file of the UniGene sp_v1.1_unigene1945

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	protein	-	-	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	57%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	57%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	57%
Blast2go	Zinc finger, RING-type, conserved site	IPR017907	-	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTG6

Fln msg: your sequence is shorter than subject: 779 - 828

Fln protein: MSIRPSSAVRSTARSEDHNSTSTPIGHGRKLHSIRAGVGPDSAPEPAYTATVDEVSDIRREFLPTSTTAVAESMTAVFEDFQHLSRQHGEFPKEFVARGGNTREQNDLDHQSSRSHPACSGGLSTTFRMAESLNGSSPAAEVRRYVDQQNTGTNASLATNAIRRGRKGQTLNGNHLLNFYSDPIPRAPRGPPRNLPPRRQQRIKPYNKDLFLQANFRFLVSGMGDYMLNSSNPDKMLQWEDVAAVNFSTPNHVQCPICLDSPPLCPQITTCGHIFCFPCILRYLMMGEGDHKGDNWEKCPLCSVMISCKDLHTVCIGNVKHYDVGKHIDFTLLTRAKNSVIPFEKNQYSLGALPHSIDGQCNAFSRFTLTYDPELSASKAALELTRWIEKVESEGGEDLESLPYVYAARDQLEERKKAWTERRASEYLSGSPPLKQQLMADAKSGSGKLKIDSFDSVKEDDPSEPQGVQGHLSKCDDKRELDKASGKLKEIKNLEDMEFKHQNENTEPVDEESYSFYQSADGQFLILHPLNMKCLLHHYGSHNLLPSRIGGKILQLDSLAQTEAIRKRYRYLSHFPLTTTFQLCEIDLSDLLPPSAFVPFTDEIEKRKAERRRRQKQEARAKRLDSAVAVQARPVLPESTYVSNDDKPPSSADFEALGEPKNASVSSPVLNERKLFSHVTRLGFAAGYDSPALKEGPSEELTPDSMDAASNSINMGRAGVSADGGTSSSSSMSFADIIAAPKPSGQECSRQISKSQNSGKKGKKATKVLLSTAGGRRY*

Protein Length: 780

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATGCGAGTTTCATCGGCCGTCTTCGCTTTCCTTCCCGTAATATCCCACTCCTGAATATTTATTTTC_-_ATGTCCATCAGGCCCTCAAGCGCTGTACGATCCACTGCTCGCTCTGAAGATCATAATTCCACTTCAACCCCCATCGGCCATGGACGCAAGCTACACAGCATACGGGCCGGAGTCGGACCCGACAGTGCCCCGGAACCGGCTTACACGGCAACGGTGGATGAGGTCTCGGACATCCGCCGCGAATTCCTACCGACTTCAACGACCGCAGTAGCAGAATCTATGACTGCAGTCTTCGAAGATTTCCAGCACTTGTCCAGGCAACATGGAGAGTTTCCTAAGGAGTTTGTGGCAAGAGGTGGAAATACAAGGGAACAAAATGACCTTGACCATCAATCTTCTAGAAGTCATCCTGCATGCTCGGGTGGTTTGTCCACAACATTCAGAATGGCCGAGTCACTTAATGGGAGCTCACCAGCTGCAGAGGTACGGAGATATGTTGATCAACAAAATACAGGTACCAATGCTTCACTGGCTACAAATGCAATAAGAAGAGGAAGGAAAGGTCAGACGTTGAATGGTAATCACTTGCTAAATTTTTATTCTGATCCAATTCCTCGTGCTCCTCGTGGTCCGCCGAGAAATCTGCCACCTAGGAGACAACAGCGAATAAAACCCTATAATAAGGATCTATTTTTGCAGGCAAACTTCAGATTTCTAGTGTCTGGTATGGGGGACTATATGTTGAATTCAAGCAATCCAGATAAAATGTTACAATGGGAAGATGTTGCTGCTGTAAATTTTTCCACTCCTAACCATGTACAGTGTCCTATTTGTTTGGACAGCCCTCCATTGTGTCCTCAAATAACAACCTGTGGTCACATCTTTTGTTTTCCTTGTATTCTACGGTATTTGATGATGGGAGAAGGGGATCACAAAGGTGACAATTGGGAGAAGTGCCCCCTCTGCTCTGTTATGATTTCATGTAAGGATCTTCATACCGTTTGCATTGGTAATGTAAAACACTATGATGTTGGGAAACATATTGACTTCACACTTTTAACAAGGGCAAAAAATTCTGTCATTCCTTTTGAAAAGAATCAGTATTCTCTGGGTGCTTTGCCTCACAGTATAGATGGTCAGTGTAATGCCTTTTCAAGGTTTACTCTAACATATGATCCAGAGTTATCTGCAAGCAAGGCAGCACTCGAGCTTACTAGATGGATTGAGAAAGTAGAGTCTGAAGGGGGTGAAGATCTGGAGTCACTCCCTTATGTGTATGCAGCGAGAGATCAATTAGAAGAAAGGAAAAAGGCATGGACTGAACGTCGTGCCTCAGAATATCTCAGTGGTAGTCCCCCACTGAAACAACAGCTTATGGCTGATGCTAAATCAGGGTCCGGTAAACTTAAGATTGACAGTTTTGATTCAGTAAAGGAGGATGATCCGTCAGAACCACAAGGTGTTCAGGGACACCTTTCTAAGTGTGACGATAAAAGGGAATTGGATAAAGCATCAGGTAAGCTTAAAGAAATTAAAAATTTGGAAGATATGGAGTTCAAACATCAAAATGAAAACACAGAGCCTGTGGACGAGGAGTCATATTCTTTCTATCAGTCAGCTGATGGACAATTTCTCATCCTTCATCCCTTAAATATGAAATGCCTCCTTCACCATTATGGGAGCCATAATTTGCTACCATCCAGAATTGGTGGCAAAATTTTACAACTAGATTCACTTGCACAAACAGAAGCCATTAGAAAGCGCTATCGATATTTGAGCCATTTCCCTTTGACTACAACATTTCAGTTGTGTGAGATTGATCTAAGTGACCTTTTACCTCCTAGTGCATTTGTTCCATTTACTGATGAGATTGAGAAACGGAAAGCTGAACGTCGTCGTCGTCAAAAGCAGGAAGCTAGAGCTAAGAGGCTGGATTCAGCAGTGGCAGTCCAAGCAAGACCTGTTCTACCAGAGTCCACTTATGTCAGTAATGATGACAAGCCGCCATCAAGCGCTGATTTTGAAGCTTTAGGGGAACCAAAAAATGCATCTGTGAGTTCTCCAGTATTGAATGAGCGGAAGCTGTTTTCACATGTCACACGACTTGGATTTGCTGCTGGGTATGATTCTCCAGCTCTTAAGGAAGGCCCATCTGAAGAGTTGACCCCGGATTCAATGGATGCTGCTTCAAATAGCATTAATATGGGAAGAGCAGGTGTTTCTGCAGATGGTGGTACAAGCAGTTCGTCCTCTATGTCATTTGCAGATATTATAGCAGCCCCAAAACCCAGCGGGCAAGAATGTAGTAGGCAGATATCCAAGTCTCAAAATTCTGGGAAAAAGGGCAAGAAAGCTACCAAGGTTCTTCTCTCTACAGCAGGTGGAAGAAGGTATTGA___TTCGGTGTAAATTTTTAAGACATGTATTATTAGTGTCCACTGCATCAAAGTTTGGCTTCTTGATATTTAAATTCTTCCCTTGCAACTCTCAGTTTTTCACTTCCAGAAATTTCTTGGTATTAGAATTTAAATTTATGCCGTTCTGTGCACTTGTGTGCTCTTAAGATCCTTTGGAGAACAGAACCTAGGGATTGAAGTCCACAACATTTGGTATATGGTTGTCAATGTTGTACATTTTGTTCTGTAATTTGCTTATCGAGAGTAAGATATCTACGCATTACACATTATTTTCTGAATAAAAGGCTTCGAAAACTGAAATTCCCATTTGGTTAAAAAAA

Fln Alignment:

sp_v1.1_unigene1945___PSSAVRSTARSEDHNSTSTPIGHGRKLHSIRAGVGPDSAPEPAYTATVDEVSDIRREFLPTSTTAVAESMTAVFEDFQHLSRQHGEFPKEFVARGGNTREQNDLDHQSSRSHPACSGGLSTTFRMAESLNGSSPAAEVRRYVDQQNTGTNASLATNAIRRGRKGQTLNGNHLLNFYSDPIXXXXXXXXXXXXXXXXXXIKPYNKDLFLQANFRFLVSGMGDYMLNSSNPDKMLQWEDVAAVNFSTPNHVQCPICLDSPPLCPQITTCGHIFCFPCILRYLMMGEGDHKGDNWEKCPLCSVMISCKDLHTVCIGNVKHYDVGKHIDFTLLTRAKNSVIPFEKNQYSLGALPHSIDGQCNAFSRFTLTYDPELSASKAALELTRWIEKVESEGGEDLESLPYVYAARDQLEERKKAWTERRASEYLSGSPPLKQQLMADAKSGSGKLKIDSFDS-------------------------------------------------VKEDDPSEPQGVQGHLSKC-DDKRELDKASGKLKEIKNLEDMEFKHQNENTEPVDEESYSFYQSADGQFLILHPLNMKCLLHHYGSHNLLPSRIGGKILQLDSLAQTEAIRKRYRYLSHFPLTTTFQLCEIDLSDLLPPSAFVPFTDEIXXXXXXXXXXXXXXXXXXXLDSAVAVQARPVLPESTYVSNDDKPPSSADFEALGEPKNASVSSPVLNERKLFSHVTRLGFAAGYDSPALKEGPSEELTPDSMDAASNSINMGRAGVSADGGTXXXXXXXFADIIAAPKPSGQECSRQIXXXXXXXXXXXXATKVLLSTAGGRRY
C0PTG6______________PSSAVRSASPSEEHNSISTPICHGRTLHSIRAGVGPDNAPDPLYKATVDEVSDIRREFLPPSTTVVAESVNAVSEDSQQLSRHLGESSKDFVARNVNTSEQNGLDHQFSRNHPACSGGLSTTFRMAQSLNGNSPDAEVRRYVEPQNAGTGASLATNAIRRGRKGQTLNGNHLLNFYSDPIPRAPRAPPRNLPPRRQQRIKPYNKDLFLQANFRFLVSDMGDYVLNSSNPDKMLLWEDVAAVNFSTPNHVQCPICLDSPPLCPQITTCGHIFCFPCILRYLMMGEGDHNGYNWKKCPLCSIMISCKDLHTVCIGNVKQYDVGKHIDFTLLTRAKSSVIPFEKNQHSLGALPHSIDGQCNAFSRFTLTYDPELSASKAALKLTSWIEMVQSEGGEDLELLPYVYAARDQLEERKKAWTERRASEYLSGSPPLKQRLMAEAKAGLGKLKIDSFDSVCPTQSMKIKSGDDITFSNHDPSHQVTKRSGSYLNSIANSEQLLAQKAVVKEDDPSEPQGFQEYLPKCGGDKRESDKGSEKLQEIKNLEDIGFKHQNENTEPVDEESYSFYQSADGQFLILHPLNMKCLLHHYGSHNLLPSRIGGKILQLETFTQSEVIRKRFRYLSHFPLTTTFQLCEIDLSDLLPASAFFPFTDEIEKRNAERRRRRKQEARAKRVDSAVTVQARPVLPEFTYVSTDDKPPSSADFEALGEPKSASVSSPVLNERKLFSHVTRLGLAAGYDSPALKEGLSGELSPGSMASASNSINMERVGVSADGGTSSSSTMSFADIITAPKPSGQECSRQVSKSQSSGKKGKKATKVLLSTAGGRRY

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
880		66		33	0.997452
1319	90			10	0.90298
2272	10		90		0.90298
2334	22		77		0.999999
2604		20		80	0.995493
2657			86	13	0.999973
2758		60		40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1924	1936	CGT CGT CGT CGT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain