SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1942

Length: 1205 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1942

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tymo_45kd_70kd domain containing protein	-	-	1.0e-05	29%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	52%
Blast2go	predicted protein [Populus trichocarpa]	-	-	2.66956e-40	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	2.66956e-40	67%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.66956e-40	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9N972

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 143 aas, putative chimeric sequence, your sequence is shorter than subject: 211 - 591

Fln protein: EWTLVSQVAVESGEDLDKYRLGAMVGKRARNWITQCTAWFRPDLIYVKKPFYQARFEPQEEFFRRLAEFIDPLTEEAHRFSVPGEGEMRTYYECLCRILGVEASVSDDDAVSAYEKLDDERRSLCWDFVLSNHPVKLLHPFTKKWRAREQAMTASGGSSEVEDEEESEDGEASAGMQMEVEQHSTDQQMEVEQDSTDQQAMFWEKSSRTR*

Protein Length: 212

Fln nts: GAGTGGACTCTGGTATCTCAGGTTGCAGTGGAGAGCGGAGAGGATTTGGACAAGTACAGGCTAGGGGCCATGGTCGGGAAGAGGGCAAGGAATTGGATTACGCAGTGCACGGCTTGGTTCAGGCCGGATTTGATTTATGTCAAGAAGCCCTTTTATCAGGCCAGGTTCGAGCCCCAGGAGGAATTTTTCCGACGGCTTGCGGAATTTATTGATCCGTTGACAGAAGAGGCGCATAGGTTTTCGGTTCCGGGTGAGGGGGAAATGAGGACCTATTATGAGTGCCTATGCAGGATCTTGGGGGTCGAGGCTAGTGTTTCGGATGACGATGCTGTCTCGGCGTACGAGAAATTGGACGACGAGCGAAGGTCCTTGTGCTGGGACTTCGTGCTTTCCAATCATCCGGTGAAACTGCTTCATCCTTTCACCAAGAAATGGAGGGCCCGCGAGCAGGCCATGACTGCATCAGGTGGGAGCAGTGAGGTGGAAGATGAAGAGGAAAGCGAGGATGGAGAAGCGTCTGCTGGAATGCAAATGGAGGTGGAGCAACATTCTACTGATCAGCAAATGGAGGTGGAGCAAGATTCTACTGATCAGCAGGCAATGTTTTGGGAAAAGAGTTCAAGAACTCGCTGA___GAGATCTCGAGGATCAAGCGTTTGAAGATTTGGAGATGAATGAAGAAGAAGGCACCGAGATTGGGAACGAGGATGCAGAGTTGAAGCTTGGTGCACTGTCTGCAATTGGTGGAACAGAAAGCAGCAGGGAAGGTGGGAGTCCCGCTGAGTCCGTGGCACCTGCCGAGGATGCGAAGGGAAGGAGAAACGAATCGGAGAATGCTCGCGATCGTGAATTCACAATTAGAGCTGCCGTTCGTCCGTTCACATACAGGGATCTCCTCAGAGAAATTGTTCTCCTGCGAGAGGCTCTGGTGGAACACAGAGCCGATGCCCGTGAACCTTTAAAGTTTGTCGATGCGAATTGTTAGGTATGTTTTTAAATGTGCAATATTATTTCTTCATATGTCCCATCACCTGTAGGATAAGTAGGTAAGCTATTGGAAGAGCCTTTCTTAGCTGTAACAATATCAATCCATGGAGAGTTCTTTTACAGAAGATGGCAGGAAGATATATGTAGACTAACATTCACTCTCTGAAAGCTTCAATACCATCCGAACTTTGAATATGAGTGTTTATTATTGGAGACAACA

Fln Alignment:

sp_v1.1_unigene1942___EWTLVSQVAVESGED-LDKYRLGAMVGKRARNWITQCTAWFRPDLIYVKKPFYQARFEPQEEFFRRLAEFIDPLTEEAHRFSVPGEG---EMRTYYECLCRILGVEASVSDDDAVSAYEKLDDERRSLCWDFVLSNHPVKLLHPFTKKWRAR
B9N972______________QWTLVSEVVVEAGKQRLDKWNLMGRLGNQARKLITRCAAWFRPDIIYVKRPVFQCRFEPQDDFFRGLMPFLDPKTEKDFLFELENEDGSVQLCTYYEGLCKIVKVSQKAFVDDVVNAYEKMSDERKSECLGFLMRNHPVQLLHPYTKEWKAK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
730		83		16	0.994512
731			16	83	0.994512
733			16	83	0.994512
856	87		12		0.992554
938			87	12	0.992554
942		87		12	0.992554
946	12		87		0.992554
978			14	85	0.993533
993	20			80	0.995493
1115	25		75		0.996473
1161	50			50	1.0
1195			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain