SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1938

Length: 1634 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1938

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	N-acetyltransferase, putative	-	-	67%
FL-Next	sp=Uncharacterized N-acetyltransferase ycf52; Porphyra yezoensis. Plastid; Chloroplast.	-	-	46%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GNAT domain	IPR000182	-	0.0	74%
Blast2go	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q1XDU5

Fln msg: your sequence is longer than subject: 230 - 174

Fln protein: MMTISIPSAHVHQLNCFGSFEPQKANTSCKFSTLRTPYRRRRSGLNGRLACRGASEPIIAEEREEKDRGIWITESGKFSISDSQLSSRGFELHYFLDNLDLDELNALFVKVGFPRRQKERLKRALHNTPSLLWVEEKKSGKVVAFARATGDDVFNAIIWDVVVDPALQGIGLGKAVMERLMGSLLDKGITNIALYAEPHVLGFYRPLGFTADPDGIKAMVYSKTISGNR*

Protein Length: 231

Fln nts: ATGGGGACATCGCCCCTTAGATGTCACTCCTGGTAAAATGCAAAGGAACCTGGATCCAACATGTTTGGATGTAAATCTGTTTGTGGTCTGGGGAATGGATAAGAAAGAGACTCAGCAGTTGAGGATCCCTTTCATCCTAACGCGGCTGTGAATGGCGCCGGCGAAAAGATGAACACCGAGAGCAATAGCATCGATCAACTCTGCTCATTTTCATCATTCGAATTACATCCCGACAACATCG_-_ATGATGACGATATCGATACCCTCTGCACATGTTCATCAATTGAATTGCTTCGGTTCTTTTGAACCCCAAAAAGCCAATACTTCATGCAAATTTTCCACTCTCAGAACTCCTTACAGACGCCGAAGAAGTGGATTAAATGGGCGATTGGCTTGCAGGGGAGCGTCAGAACCCATAATAGCTGAAGAAAGAGAAGAAAAAGACAGGGGAATTTGGATAACAGAGTCCGGCAAGTTTTCCATTTCGGATTCCCAGCTCAGCTCTCGCGGATTCGAGCTTCATTACTTCTTGGACAACTTGGATTTGGATGAATTGAATGCCCTGTTTGTCAAAGTGGGGTTTCCTCGCAGGCAGAAGGAAAGGCTCAAACGCGCTCTGCATAACACCCCATCCCTGCTGTGGGTGGAAGAGAAAAAATCTGGCAAGGTTGTTGCATTTGCAAGGGCTACAGGGGACGATGTGTTCAATGCAATCATATGGGATGTTGTGGTGGATCCCGCCTTGCAAGGGATTGGATTGGGTAAGGCTGTTATGGAGCGTTTGATGGGCAGTTTGCTGGATAAGGGTATTACGAATATTGCTCTTTATGCTGAACCCCATGTGTTGGGGTTTTATCGGCCCCTGGGATTCACTGCAGATCCTGATGGAATCAAGGCTATGGTCTATTCTAAGACAATTTCAGGAAACCGATGA___GGGAAAAACAAATTAGGTATGTTGTAGTTCTACATTTGGAATTTGGTTTGGAGGTTTTGGGTTTTTGATCATTATTTTCAGTCCACGAATTCCAAGTTGGTTTTTGTTTTCAACCTTGCTATTGGTATTGACGCTGTCTTGTTAAGTTCAGATGAAGTTCTTACTTGGGTATTCATATTACTTGTTAAGGCCAACGGTGTAATGCTCAGATTTAAATCTCGAATTTGGTTGAAGTTTTGGTTATTTTCGGTTCCCGAATTCCAAGTTGGATTGTTTTCATCCCTCCAATCGCTATGTGAACTGGCTTGTTACGTCCAGATAATGTTCTTACTTGGGTAATCAAATTATTTGTGAAGGAAAATTGGGTAATGTTCAGATTTATACTTGGAATTTGTTTTGGGTTTTCTATCACTTTTTTCAGGCTTCGAATTCCAACTGGTTTATTTTCAACCCTGTAATCGGTATCTAGACTGACTTGTTACGTTCAGACCAAGTTCTTAATTGGTAATCAAATTACTTGTCAAGGAAAATTGGGTAATGCTCAGATGTACATCTCTCAATTGTTTTGGAGAGTTTTCTATCATCATTGTCAGCCCCCATATTCCAAGTTGGTTTGTTTTCAGCCCTGCAGTTGGCATATAGACCGAGTTGTCATGTTCAGACAAATTTTCTTACTTGGGTAATCAAATTACTTGTTAAGGAC

Fln Alignment:

sp_v1.1_unigene1938___VGFPRRQKERLKRALHNTPSLLWVEEKK--SGKVVAFARATGDDVFNAIIWDVVVDPALQGIGLGKAVMERLMGSLLDKGITNIALYAEPHVLGFYRPLGFTADPDGIKAMVY
Q1XDU5______________VGWVKRPLKKVKIALKNSSIIISLIQKKDANSKLVGFARATSDNGFNATIWDVVIHPDFQGLGLGKVVIHQLIQQLRQAEISTITLFAEPDVVSFYKKLGFIKDPDGVKGMFW

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
859	85		14		0.993533
863			85	14	0.993533
864		85	14		0.993533
865	14	85			0.993533
869			85	14	0.993533
872	85	14			0.993533
879		14	85		0.993533
880	14	85			0.993533
1053		85		14	0.993533
1067		12		87	0.992554
1069	87			12	0.992554
1075	12			87	0.992554
1080			12	87	0.992554
1081		12		87	0.992554
1082	87			12	0.992554
1089		12	87		0.992554
1090	87			12	0.992554
1091		12		87	0.992554
1092	12		87		0.992554
1217	83		16		0.994512
1220		83	16		0.994512
1221		83		16	0.994512
1222			16	83	0.994512
1223	16	83			0.994512
1225	83	16			0.994512
1226	83			16	0.994512
1228		83	16		0.994512
1236		16	83		0.994512
1241		16	83		0.994512
1242	16		83		0.994512
1276	83			16	0.994512
1277	83	16			0.994512
1278			16	83	0.994512
1281	80		20		0.995493
1284			20	80	0.995493
1286			20	80	0.995493
1290	20			80	0.995493
1291		20	80		0.995493
1293	80		20		0.995493
1295		25	75		0.996473
1297	75	25			0.996473
1374		66	33		0.997452
1563		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain