SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1886

Length: 2537 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1886
AGCTAGTTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGGGGCAAACAAACACTATACAAAGTGGATATCACTGTGGATGTAAAAGATTATGGAGAGTCAGATTCTTGGAGTCATCCATTTGGATTTCGGAAAATTGAGAGCTACATAGATTCTGCAACTGGTGGAAGATTATTCAAAGTGAATGGGGAACCTGTTTTCATTCGTGGAGGGAACTGGATAGTGTCTGATGGTTTGCTGCGTCTTACTGAAAAGCGTTACAAAGCAGAGATCAAGTTCCATGCTGATATGAATTTTAATATGATTCGTTGTTGGGGTGGGGGATTAGCAGAGCGGCCAGAGTTCTATAAATACTGTGATCTATATGGATTGTTGGTCTGGCAAGAGTTCTGGATTACAGGAGATGTTGATGGGCGTGGTATTCCTGTTTCAAACCCAAATGGGCCATTAGATCATGAACTTTTTCTTATATGTGCAAGGGACACAGTCAAGCTTTTACGCAACCATGCAAGCTTGGCACTATGGGTTGGAGGTAATGAGCAACACCCACCAGATGACATCAATGCAGCTCTAAAGAATGACTTGCAGCTTCATCCTTATTCGAAGTCCCCTGACATTGGAACAAATTTAATGAATTCACATACATGGCCCAAAGCCTCTGAAGATCCTAGCCGATACCTTGATGGAACCCGTGTATACATACAAGGATCTCTATGGGATGGATTTGCCAGTGGAGATGGAGAATTTACAGATGGCCCCTATAATATCCAAAATCCAGAAGACTTTTTCAAGGATGACTTTTATAAATATGGGTTTAATCCTGAGGTGGGTTCTGTAGGTATGCCACTTGCAACCACTATCAGAAGAACAATGCCTCCAGAAGCCTGGCAAATTCCACTGTTTCAGAAGCTCCCAAGTGGCTACATTAAAGAAGTGCCAAATCCAGTTTGGGACTATCACAAGTATATCCCATATTCTAACCCTGGAACGGTCCATGATCAAATTGAAATGTATGGAGAGCCAAAGAGTCTGGATGATTTCTGTGAGAAGGCACAACTTGTCAACTATGTTCAATATAAGGCACTTTNGGAAGGGTGGACGTCAAGGATGTGGACAAAATACACAGGTGTTCTAATTTGGAAAACCCAGAATCCATGGCCGGGTTTGAGAGGTCAATTTTATGACCATTTTCTTGAACAGACAGCAGGATTCTATGGTGTCCGTTCAGCTGCAGAGCCAATCCATGTGCAGTTGAATCTGGCAACATATTTTATTGAGATAGTGAACACAACATCAAGTCCCCTGTCAAATGTTACAGTGGAGGCCTCAGTATGGGATTTGGAAGGGACCTGTCCATACCACAAAATCAACAAAAATATATCAGTGCCATCAAAAATAACACTTCCAGTTTTTGAAATGCAGTATCCAAAATCACATAATGCAAAGCCGGTTTATTTTCTTCTCCTCATGCTTCTTGATACATCAGCAAAACCTTTATCGAGGAACTTTTATTGGCTCCATTTGCCAGGAGGAAACTACAAATTACTGGAGACATATAGATCTAAAAAGGTACCTATACGGAGTACTACTAAAGTACTTTTGGTAGGAAACAGATGTACCGTGAAAATAGAAGTGCATAACACATCAAAAAAGTCAGTATCTGAATGTCATTCTCTCCCTAATGTTGAAGATCATGACAACCAACATGAGCCCATTAGCATTGAGAATAATTGTGAATATGGAAGTATGAATGTAGAAGAACCTGCAACTGAGACAACAGAGGGATTGCTTTCAAGGGTGTCAAGCCTTTTTTCCAGGAAGAACAAAAACATTCAAGTGACAGAGACAAAAGGGGATCACGCAGGGGTTGCATTCCTTCTTAATTTCTCTGTAGTTGGTAAGCGCAGTAACAGCAAATCGGAGGAATATAATCTTCCCGCCAATTACTCAGATAACTATTTATCTCCAGCTCCCGGGGAGGTGTTACCTGTTGATATAAACTTTGAACTTCCTCCAAATACAGTGCCCCAGGTCGTCCTTAAAGGTTGGAACACAAATAAGCATCATCTATCCATGCAAATACCCAAGCTTTAATACATTAATGTATATTAGAATTTAGAACACTTAATCTTCTGTAGTATTATCTTTTCACCATGCAATTGTTGAATTTCTTCCTTCACAAGTTATCATTGCGATCCTTGTAACGAAGCAGTGACATTTATTCAACTACAAATATTAAGGTACGAGGTGTACCCTGAGCGTTCGAGCTCATGAATCAAGCATTTACTAATAAAAGACAACCAAGCATGCCTTGTCCTTGTTAGGTTTATGCCCTGTTTCTAAGAACCATTCCAGCAATGGACAAGGTATGTAAGTATTCAGATATATTTATTGGAGGGATTCTTTTATAATGCATGATTTTACCCTAGAAACTTCAAAATCCATGGAGAATTATTTTTAGGAAAGGTTGCCAGCAGTCTTTTCTCAACTATTGGTTTTATAAATTTCCTCCAAAGTTTTGGCCT

Ace file of the UniGene sp_v1.1_unigene1886

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-mannosidase, putative (EC:3.2.1.152)	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	glycosyl hydrolase	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	76%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	76%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	76%
Blast2go	Glycoside hydrolase, family 2, active site	IPR023232	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMH8

Fln msg: your sequence is longer than subject: 602 - 403

Fln protein: MNFNMIRCWGGGLAERPEFYKYCDLYGLLVWQEFWITGDVDGRGIPVSNPNGPLDHELFLICARDTVKLLRNHASLALWVGGNEQHPPDDINAALKNDLQLHPYSKSPDIGTNLMNSHTWPKASEDPSRYLDGTRVYIQGSLWDGFASGDGEFTDGPYNIQNPEDFFKDDFYKYGFNPEVGSVGMPLATTIRRTMPPEAWQIPLFQKLPSGYIKEVPNPVWDYHKYIPYSNPGTVHDQIEMYGEPKSLDDFCEKAQLVNYVQYKAL*EGWTSRMWTKYTGVLIWKTQNPWPGLRGQFYDHFLEQTAGFYGVRSAAEPIHVQLNLATYFIEIVNTTSSPLSNVTVEASVWDLEGTCPYHKINKNISVPSKITLPVFEMQYPKSHNAKPVYFLLLMLLDTSAKPLSRNFYWLHLPGGNYKLLETYRSKKVPIRSTTKVLLVGNRCTVKIEVHNTSKKSVSECHSLPNVEDHDNQHEPISIENNCEYGSMNVEEPATETTEGLLSRVSSLFSRKNKNIQVTETKGDHAGVAFLLNFSVVGKRSNSKSEEYNLPANYSDNYLSPAPGEVLPVDINFELPPNTVPQVVLKGWNTNKHHLSMQIPKL*

Protein Length: 603

Fln nts: AGCTAGTTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGGGGCAAACAAACACTATACAAAGTGGATATCACTGTGGATGTAAAAGATTATGGAGAGTCAGATTCTTGGAGTCATCCATTTGGATTTCGGAAAATTGAGAGCTACATAGATTCTGCAACTGGTGGAAGATTATTCAAAGTGAATGGGGAACCTGTTTTCATTCGTGGAGGGAACTGGATAGTGTCTGATGGTTTGCTGCGTCTTACTGAAAAGCGTTACAAAGCAGAGATCAAGTTCCATGCTGAT_-_ATGAATTTTAATATGATTCGTTGTTGGGGTGGGGGATTAGCAGAGCGGCCAGAGTTCTATAAATACTGTGATCTATATGGATTGTTGGTCTGGCAAGAGTTCTGGATTACAGGAGATGTTGATGGGCGTGGTATTCCTGTTTCAAACCCAAATGGGCCATTAGATCATGAACTTTTTCTTATATGTGCAAGGGACACAGTCAAGCTTTTACGCAACCATGCAAGCTTGGCACTATGGGTTGGAGGTAATGAGCAACACCCACCAGATGACATCAATGCAGCTCTAAAGAATGACTTGCAGCTTCATCCTTATTCGAAGTCCCCTGACATTGGAACAAATTTAATGAATTCACATACATGGCCCAAAGCCTCTGAAGATCCTAGCCGATACCTTGATGGAACCCGTGTATACATACAAGGATCTCTATGGGATGGATTTGCCAGTGGAGATGGAGAATTTACAGATGGCCCCTATAATATCCAAAATCCAGAAGACTTTTTCAAGGATGACTTTTATAAATATGGGTTTAATCCTGAGGTGGGTTCTGTAGGTATGCCACTTGCAACCACTATCAGAAGAACAATGCCTCCAGAAGCCTGGCAAATTCCACTGTTTCAGAAGCTCCCAAGTGGCTACATTAAAGAAGTGCCAAATCCAGTTTGGGACTATCACAAGTATATCCCATATTCTAACCCTGGAACGGTCCATGATCAAATTGAAATGTATGGAGAGCCAAAGAGTCTGGATGATTTCTGTGAGAAGGCACAACTTGTCAACTATGTTCAATATAAGGCACTTTaGGAAGGGTGGACGTCAAGGATGTGGACAAAATACACAGGTGTTCTAATTTGGAAAACCCAGAATCCATGGCCGGGTTTGAGAGGTCAATTTTATGACCATTTTCTTGAACAGACAGCAGGATTCTATGGTGTCCGTTCAGCTGCAGAGCCAATCCATGTGCAGTTGAATCTGGCAACATATTTTATTGAGATAGTGAACACAACATCAAGTCCCCTGTCAAATGTTACAGTGGAGGCCTCAGTATGGGATTTGGAAGGGACCTGTCCATACCACAAAATCAACAAAAATATATCAGTGCCATCAAAAATAACACTTCCAGTTTTTGAAATGCAGTATCCAAAATCACATAATGCAAAGCCGGTTTATTTTCTTCTCCTCATGCTTCTTGATACATCAGCAAAACCTTTATCGAGGAACTTTTATTGGCTCCATTTGCCAGGAGGAAACTACAAATTACTGGAGACATATAGATCTAAAAAGGTACCTATACGGAGTACTACTAAAGTACTTTTGGTAGGAAACAGATGTACCGTGAAAATAGAAGTGCATAACACATCAAAAAAGTCAGTATCTGAATGTCATTCTCTCCCTAATGTTGAAGATCATGACAACCAACATGAGCCCATTAGCATTGAGAATAATTGTGAATATGGAAGTATGAATGTAGAAGAACCTGCAACTGAGACAACAGAGGGATTGCTTTCAAGGGTGTCAAGCCTTTTTTCCAGGAAGAACAAAAACATTCAAGTGACAGAGACAAAAGGGGATCACGCAGGGGTTGCATTCCTTCTTAATTTCTCTGTAGTTGGTAAGCGCAGTAACAGCAAATCGGAGGAATATAATCTTCCCGCCAATTACTCAGATAACTATTTATCTCCAGCTCCCGGGGAGGTGTTACCTGTTGATATAAACTTTGAACTTCCTCCAAATACAGTGCCCCAGGTCGTCCTTAAAGGTTGGAACACAAATAAGCATCATCTATCCATGCAAATACCCAAGCTTTAA___TACATTAATGTATATTAGAATTTAGAACACTTAATCTTCTGTAGTATTATCTTTTCACCATGCAATTGTTGAATTTCTTCCTTCACAAGTTATCATTGCGATCCTTGTAACGAAGCAGTGACATTTATTCAACTACAAATATTAAGGTACGAGGTGTACCCTGAGCGTTCGAGCTCATGAATCAAGCATTTACTAATAAAAGACAACCAAGCATGCCTTGTCCTTGTTAGGTTTATGCCCTGTTTCTAAGAACCATTCCAGCAATGGACAAGGTATGTAAGTATTCAGATATATTTATTGGAGGGATTCTTTTATAATGCATGATTTTACCCTAGAAACTTCAAAATCCATGGAGAATTATTTTTAGGAAAGGTTGCCAGCAGTCTTTTCTCAACTATTGGTTTTATAAATTTCCTCCAAAGTTTTGGCCT

Fln Alignment:

sp_v1.1_unigene1886___KASEDPSRYLDGTRVYIQGSLWDGFASGDGEFTDGPYNIQNPEXXXXXXXXXXGFNPEVGSVGMPLATTIRRTMPPEAWQIPLFQKLPSGYIKEVPNPVWDYHKYIPYSNPGTVHDQIEMYGEPKSLDDFCEKAQLVNYVQYKAL*EGWTSRMWTKYTGVLIWKTQNPWPGLRGQFYDHFLEQTAGFYGVRSAAEPIHVQLNLATYFIEIVNTTSSPLSNVTVEASVWDLEGTCPYHKINKNISVPSKITLPVFEMQYPKSHNAKPVYFLLLMLLDTS-AKPLSRNFYWLHLPGGNYKLLETYRSKKVPIRSTTKVLLVGNRCTVKIEVHNTSKKSVSECHSLPNVEDHDNQHEPISIENNCEYGSMNVEEPATETTEGLLSRVSSLFSRKNK
B8LMH8______________KAYEDPSRYLDGTRIYIQGSLWDGFAKGNGEFSDGPYEIQNPEDFFKDDFYQYGFNPEVGSVGMPVATTIRATMPPEAWQIPLFQKLASGYIKEVPNPVWDYHKYIPYSKPGKVHDQIEMYGEPNSLDDFCAKAQLVNYIQYKALLEGWTSRMWTKYTGVLIWKTQNPWTGLRGQFYDHLHDQTAGFYGVRSAAEPIHVQLNLATYFIEIVNTTSSPLSSVTVEASVWDFEGNRPYHKINKNISVPSKKTLPVFEMQYPKSDNPKPVYFLLLKLLDKSNAKVLSRNFYWLHLPGGNYKLLDTYRSKKVPIRSSTQAFLVGKTCTVKIKVHNLSNKSLSECQSLLNFEDRDNQHEPIGIENNCDYGNMNVEEPATEKTEGLLSRVSSLFFREEQ

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
167		16		83	0.994512
247		40		60	1.0
260	50			50	1.0
325			20	80	0.995493
326	20			80	0.995493
364	33	66			0.997452
788		75	25		0.996473
789		75	25		0.996473
790	75		25		0.996473
914		16		83	0.994512
1101		25		75	0.996473
1195		20		80	0.995493
1199		83		16	0.994512
1200	83		16		0.994512
1205		83		16	0.994512
1206	16			83	0.994512
1236	25		75		1.0
1396	70	30			1.0
1488			16	83	0.994512
1580	66			33	0.997452
1663	50	50			1.0
1859	85	14			0.993533
1907	16		83		0.994512
2117	20		80		0.999996
2129			10	90	0.90298
2130		10		90	0.90298
2131	90	10			0.90298
2132			90	10	0.90298
2133	90		10		0.90298
2140	90		10		0.90298
2141	40		10	50	1.0
2143	50	50			1.0
2147	10			90	0.90298
2148		10	90		0.90298
2206		87		12	0.992554
2233			12	87	0.992554
2234	87	12			0.992554
2239	87		12		0.992554
2240		87		12	0.992554
2307	61			38	1.0
2314		38		61	1.0
2408			71	28	1.0
2409	71			28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain