SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1789

Length: 2029 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1789
CGTCGTGACCTTGGCTGTCACTCAACTTTGGAAAAAGCAAAAGCAATGCTCTTGGTTCTGCATAAATTTTTAACCGTGTAAGAACTAAATGCAAGGCCAACTTTTTCTCTGGAAGCCATATACAATTTGTGCAGCGCTGCTGCTTCTTCTTTGATCGATTATCGATTCATTTACCACATTCATCTTTACATTTGCATACATTTTCCTTGGACCGAATTCTAGCAATCACAAGATGCAGGTCCAGGAGTATTTGGAGAAGCACAAATTATCTCGCAAGATCGAGGAAGCTGTCAATGCTGCTGTCAGGGCAAAGGCCCCTGATCCAGTCCTCTACATTGCTAACCACATGATGAGAGTTGTTCCTTCCACAATAACAAAGTTAAAGGCACGACAAATTATTGATAGCAGAGGTAATCCTACAGTTGAAGTTGACCTGTGTACTAACAAAGGCATGTTTCGTGCATCTGTACCAAGTGGTGCCTCAACTGGAATATATGAGGCTGTGGAGTTACGTGATGGAGATGAAAGCAAGTACCTAGGAAAGGGTGTCTTAAAAGCTGTGACAAATATTAATGAGAAAATCTCTGCTATATTGGTTGATATGGATCCAACCAAACAAATGGAGATCGACAAAGCCATGATAGAATTGGATAATACAAAAAATAAGGGGGAGCTTGGAGCAAATGCAATTTTAGCTGTATCCATGGCAGTTTGTAAAGCTGGAGCTGCAGCAAAAGATATTCCACTGTACCAGCATATTGCTGATCTTTCAGGAAATCCAAATTTTGTTCTTCCTGTCCCAGCCTTCAACATAATAAATGGTGGAAAACATGCTGGAAATAAATTGGCTTTTCAGGAGTTCATGATTCTACCTATTGGAGCAAGCAGTTTTGGAGAAGCAATGCAAATGGGCTGTGAAACATACCACCACTTAAAGGCAGTAATAAAAGAAAAATATGGAATCGATGCTTGTAATGTTGGCGACGAAGGTGGCTTTGCTCCAAGCATCTCAAGTAGCAAAGAAGGCTTGGATCTCATCAGGGAAGCAATTGAGAGAGCTGGTCACACAGGAAAAATAAAAATAGGGATGGACGTTGCTGCAAGCGAATTTTATAAAGATGAGAAATATGACCTGGACTTCAAAACGCCAGACAGCTCTGGGGAAGATATCAGGACAGGAGAGGAGATGATTGCGATGTATAAAGAGCTTTGCTCTGAGTACCCAATTGTCTCTATTGAAGATCCCTTTGATCAGGATGATTGGGAAAACACAAAGACTCTCACTGGCACTGGAATTTGTCAGGTTGTTGGAGATGATTTACTGGTGACAAATCCTAAAAGAGTCTCAAAGGCTATTAAGGAAGGCACCTGCAATGCACTACTTCTCAAGGTTAATCAAATTGGGACAGTGACAGAGGCCATTGAAGCAGTTAAAATGGCAAAGGATGCAAACTGGGGAGTTATGGCATCTCATAGAAGTGGTGAAACAGAAGACTGCTTTATTGCAGACCTAGCTGTAGGGCTGGCCACAGGACAAATTAAAACGGGAGCACCTTGTCGGAGTGAGCGCCTTGCTAAGTACAACCAGCTACTTAGAATCGAAGAAGATCTTGGTGATAAGGCTGTGTATGCTGGAGAGAACTGGAGGCCTACATCATAGGGTCAAAGCATCTCAAATTTGTTTTCTACGTAAGGAATTTTTAGACATTCTTGAGTTCAATTGTGTAATAAAGCCCATCACTTGTGTTCAAATATTTATGGAAGGGTATATATGGAATAAGATTCCACCTAGATTTCTTTACATCAACTGCAATGTAATCATAAGAAATCTTTTGCCTTGAATACTGTTTTCTTCTTGGAGGAAAAAGATAAATACAACAGTACAAGTGTGTTGTTATGAACAGTAACAGATTGTATAGATTTCCAGACTTCTTCCCCTATCTGAAGCCTTGTCCTATTTAGCGACATTCTATTTGTTTGTTCTCATCTAACTTTTACTTAAACAGTGTTTGAGGAGACAAAAAGTAAA

Ace file of the UniGene sp_v1.1_unigene1789

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Enolase n=2 Tax=Selaginella moellendorffii RepID=D8QV15_SELML	-	-	79%
FL-Next	sp=Enolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	82%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Blast2go	Enolase	IPR000941	-	82%
Blast2go	Enolase, conserved site	IPR020809	-	82%
Blast2go	Enolase, C-terminal	IPR020810	-	82%
Blast2go	Enolase, N-terminal	IPR020811	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQR0

Fln msg: your sequence is longer than subject: 476 - 445

Fln protein: MQVQEYLEKHKLSRKIEEAVNAAVRAKAPDPVLYIANHMMRVVPSTITKLKARQIIDSRGNPTVEVDLCTNKGMFRASVPSGASTGIYEAVELRDGDESKYLGKGVLKAVTNINEKISAILVDMDPTKQMEIDKAMIELDNTKNKGELGANAILAVSMAVCKAGAAAKDIPLYQHIADLSGNPNFVLPVPAFNIINGGKHAGNKLAFQEFMILPIGASSFGEAMQMGCETYHHLKAVIKEKYGIDACNVGDEGGFAPSISSSKEGLDLIREAIERAGHTGKIKIGMDVAASEFYKDEKYDLDFKTPDSSGEDIRTGEEMIAMYKELCSEYPIVSIEDPFDQDDWENTKTLTGTGICQVVGDDLLVTNPKRVSKAIKEGTCNALLLKVNQIGTVTEAIEAVKMAKDANWGVMASHRSGETEDCFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEDLGDKAVYAGENWRPTS*

Protein Length: 477

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTGGAAAAAGCAAAAGCAATGCTCTTGGTTCTGCATAAATTTTTAACCGTGTAAGAACTAAATGCAAGGCCAACTTTTTCTCTGGAAGCCATATACAATTTGTGCAGCGCTGCTGCTTCTTCTTTGATCGATTATCGATTCATTTACCACATTCATCTTTACATTTGCATACATTTTCCTTGGACCGAATTCTAGCAATCACAAG_-_ATGCAGGTCCAGGAGTATTTGGAGAAGCACAAATTATCTCGCAAGATCGAGGAAGCTGTCAATGCTGCTGTCAGGGCAAAGGCCCCTGATCCAGTCCTCTACATTGCTAACCACATGATGAGAGTTGTTCCTTCCACAATAACAAAGTTAAAGGCACGACAAATTATTGATAGCAGAGGTAATCCTACAGTTGAAGTTGACCTGTGTACTAACAAAGGCATGTTTCGTGCATCTGTACCAAGTGGTGCCTCAACTGGAATATATGAGGCTGTGGAGTTACGTGATGGAGATGAAAGCAAGTACCTAGGAAAGGGTGTCTTAAAAGCTGTGACAAATATTAATGAGAAAATCTCTGCTATATTGGTTGATATGGATCCAACCAAACAAATGGAGATCGACAAAGCCATGATAGAATTGGATAATACAAAAAATAAGGGGGAGCTTGGAGCAAATGCAATTTTAGCTGTATCCATGGCAGTTTGTAAAGCTGGAGCTGCAGCAAAAGATATTCCACTGTACCAGCATATTGCTGATCTTTCAGGAAATCCAAATTTTGTTCTTCCTGTCCCAGCCTTCAACATAATAAATGGTGGAAAACATGCTGGAAATAAATTGGCTTTTCAGGAGTTCATGATTCTACCTATTGGAGCAAGCAGTTTTGGAGAAGCAATGCAAATGGGCTGTGAAACATACCACCACTTAAAGGCAGTAATAAAAGAAAAATATGGAATCGATGCTTGTAATGTTGGCGACGAAGGTGGCTTTGCTCCAAGCATCTCAAGTAGCAAAGAAGGCTTGGATCTCATCAGGGAAGCAATTGAGAGAGCTGGTCACACAGGAAAAATAAAAATAGGGATGGACGTTGCTGCAAGCGAATTTTATAAAGATGAGAAATATGACCTGGACTTCAAAACGCCAGACAGCTCTGGGGAAGATATCAGGACAGGAGAGGAGATGATTGCGATGTATAAAGAGCTTTGCTCTGAGTACCCAATTGTCTCTATTGAAGATCCCTTTGATCAGGATGATTGGGAAAACACAAAGACTCTCACTGGCACTGGAATTTGTCAGGTTGTTGGAGATGATTTACTGGTGACAAATCCTAAAAGAGTCTCAAAGGCTATTAAGGAAGGCACCTGCAATGCACTACTTCTCAAGGTTAATCAAATTGGGACAGTGACAGAGGCCATTGAAGCAGTTAAAATGGCAAAGGATGCAAACTGGGGAGTTATGGCATCTCATAGAAGTGGTGAAACAGAAGACTGCTTTATTGCAGACCTAGCTGTAGGGCTGGCCACAGGACAAATTAAAACGGGAGCACCTTGTCGGAGTGAGCGCCTTGCTAAGTACAACCAGCTACTTAGAATCGAAGAAGATCTTGGTGATAAGGCTGTGTATGCTGGAGAGAACTGGAGGCCTACATCATAG___GGTCAAAGCATCTCAAATTTGTTTTCTACGTAAGGAATTTTTAGACATTCTTGAGTTCAATTGTGTAATAAAGCCCATCACTTGTGTTCAAATATTTATGGAAGGGTATATATGGAATAAGATTCCACCTAGATTTCTTTACATCAACTGCAATGTAATCATAAGAAATCTTTTGCCTTGAATACTGTTTTCTTCTTGGAGGAAAAAGATAAATACAACAGTACAAGTGTGTTGTTATGAACAGTAACAGATTGTATAGATTTCCAGACTTCTTCCCCTATCTGAAGCCTTGTCCTATTTAGCGACATTCTATTTGTTTGTTCTCATCTAACTTTTACTTAAACAGTGTTTGAGGAGACAAAAAGTAAA

Fln Alignment:

sp_v1.1_unigene1789___STITKLKARQIIDSRGNPTVEVDLCTNKG-MFRASVPSGASTGIYEAVELRDGDESKYLGKGVLKAVTNINEKISAILVDMDPTKQMEIDKAMI-ELDNTKN-----KGELGANAILAVSMAVCKAGAAAKDIPLYQHIADLSGNPNFVLPVPAFNIINGGKHAGNKLAFQEFMILPIGASSFGEAMQMGCETYHHLKAVIKEKYGIDACNVGDEGGFAPSISSSKEGLDLIREAIERAGHTGKIKIGMDVAASEFY--KDEKYDLDFKTPDSSGEDIRTGEEMIAMYKELCSEYPIVSIEDPFDQDDWENTKTLTGT--GICQVVGDDLLVTNPKRVSKAIKEGTCNALLLKVNQIGTVTEAIEAVKMAKDANWGVMASHRSGETEDCFIADLAVGLATGQIKTGAPCRSERLAKYNQLLRIEEDLGDKAVYAGENWR
B8LQR0______________ATIKAVKARSIFDSRGNPTVEVDIHLSDGYLSRAAVPSGASTGVYEALELRDGGKD-YMGKGVSKAVGNVNKIIGPALIGKDPVDQTGIDNFMVQELDGTQNQWGWCKQKLGANAILAVSLAVCKAGAYVKKIPLYQHIANIAGNKTLVMPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFREAMQMGSEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKIAIEKAGYTGKVVIGMDVAASEFYTEKDQKYDLNFKEENNNGSQKISGSELIKLYESFIEDYPIVSIEDPFDQDDWAHYAQFTATIGEKVQIVGDDLLVTNPKRVGKAINEKSCNALLLKVNQIGTVTESIEAVKMSKRAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSAAVYAGASFR

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
782		66		33	0.997452
917		83		16	0.994512
938	71		28		1.0
945	16		83		0.994512
1106	66		33		0.997452
1107	66			33	0.997452
1109		66		33	0.997452
1112	66	33			0.997452
1113		33		66	0.997452
1116			33	66	0.997452
1117	66		33		0.997452
1118		33		66	0.997452
1119	66			33	0.997452
1120	66		33		0.997452
1121	66			33	0.997452
1122		33	66		0.997452
1125		33	66		0.997452
1483			90	10	0.90298
1484			10	90	0.90298
1754	84		15		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain