SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1741

Length: 663 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1741

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NQR; NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	nqr (nadph:quinone oxidoreductase) fmn reductase	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	81%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	response to salt stress	GO:0009651	Biological Process	81%
Blast2go	peroxisome	GO:0005777	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NADPH-dependent FMN reductase	IPR005025	-	0.0	81%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
223	20	80			0.995493
224		80		20	0.995493
225	80		20		0.995493
227			20	80	0.995493
276	40		60		1.0
400	71			28	1.0
472		25	75		0.996473
539	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain