SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1709

Length: 569 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene1709
CGTCGTGACCTTGGCTGTCACTCATTTATCTTCATCATGAGCATGAGTTCACCATAGTGGAAAGGCTTATGGCATTTTTGCCACAGTTCACGGTGCAGCTGGTGCTTGTTCTTTTCTTTGCCAAAGATCTTCCACTCTGCCTTTTTGCACAGACAGTTGCATTCGTTGCTTTCAACAAGGTTATCACAGCACAGTACTTTGTTTGGTTTTTTTGTCTTTTGCCACTCATTTTGCCTTGGACAAAGCTCCACTTGCAATGGAAGGGCTTGTTATGTATTGGAGTATGGGTTGCTGCTCAGATTCACTGGTTGAGTTGGGCTTATTTGCTGGAGTTTAAAGGCATAAATGTTTTTGTACAACTGTGGTTGGCAAGCATCATCTTTTTGGTAGCAAACACATATGTCCTAATAATGATCTTGGTGAATCATAAGTTTTGTCCTCTTTTTCAACAGAAAGCAGCAATTACTGCTGATGGATATGGAAACAAGTGTGACTGAGAGAGACAACTGGCCAATTTAGTCCAGTGATAGTCCAAATGCAATTGAAGTTGTGTGTTATGTTTGCTTACT

Ace file of the UniGene sp_v1.1_unigene1709 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PNT1; PNT1 (PEANUT 1); alpha-1,4-mannosyltransferase/ mannosyltransferase/ transferase, transferring glycosyl groups (EC:2.4.1.-); K05284 phosphatidylinositol glycan, class M [EC:2.4.1.-]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	mannosyltransferase-like protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	64%

Source	KEGGs	Term	Identity
AutoFact	Fructose and mannose metabolism	00051	64%
AutoFact	N-Glycan biosynthesis	00510	64%
AutoFact	Mucin type O-Glycan biosynthesis	00512	64%
AutoFact	Various types of N-glycan biosynthesis	00513	64%
AutoFact	Other types of O-glycan biosynthesis	00514	64%
AutoFact	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	64%
AutoFact	Glycosaminoglycan biosynthesis - keratan sulfate	00533	64%
AutoFact	Lipopolysaccharide biosynthesis	00540	64%
AutoFact	Peptidoglycan biosynthesis	00550	64%
AutoFact	Glycerolipid metabolism	00561	64%
AutoFact	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	64%
AutoFact	Sphingolipid metabolism	00600	64%
AutoFact	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	64%
AutoFact	Glycosphingolipid biosynthesis - globo series	00603	64%
AutoFact	Glycosphingolipid biosynthesis - ganglio series	00604	64%
AutoFact	Carotenoid biosynthesis	00906	64%
AutoFact	Zeatin biosynthesis	00908	64%
AutoFact	Flavonoid biosynthesis	00941	64%
AutoFact	Anthocyanin biosynthesis	00942	64%
AutoFact	Flavone and flavonol biosynthesis	00944	64%
AutoFact	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	64%
AutoFact	Betalain biosynthesis	00965	64%
AutoFact	Biosynthesis of type II polyketide products	01057	64%
AutoFact	Metabolic pathways	01100	64%
AutoFact	Biosynthesis of secondary metabolites	01110	64%

Source	GOs	Term	Type	Identity
Blast2go	GPI anchor biosynthetic process	GO:0006506	Biological Process	78%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	78%
Blast2go	cell division	GO:0051301	Biological Process	78%
Blast2go	embryo development	GO:0009790	Biological Process	78%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	78%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	78%
Blast2go	cell part	GO:0044464	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mannosyltransferase, DXD	IPR007704	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMK7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 165 - 293

Fln protein: S*PWLSLIYLHHEHEFTIVERLMAFLPQFTVQLVLVLFFAKDLPLCLFAQTVAFVAFNKVITAQYFVWFFCLLPLILPWTKLHLQWKGLLCIGVWVAAQIHWLSWAYLLEFKGINVFVQLWLASIIFLVANTYVLIMILVNHKFCPLFQQKAAITADGYGNKCD*

Protein Length: 166

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATCTTCATCATGAGCATGAGTTCACCATAGTGGAAAGGCTTATGGCATTTTTGCCACAGTTCACGGTGCAGCTGGTGCTTGTTCTTTTCTTTGCCAAAGATCTTCCACTCTGCCTTTTTGCACAGACAGTTGCATTCGTTGCTTTCAACAAGGTTATCACAGCACAGTACTTTGTTTGGTTTTTTTGTCTTTTGCCACTCATTTTGCCTTGGACAAAGCTCCACTTGCAATGGAAGGGCTTGTTATGTATTGGAGTATGGGTTGCTGCTCAGATTCACTGGTTGAGTTGGGCTTATTTGCTGGAGTTTAAAGGCATAAATGTTTTTGTACAACTGTGGTTGGCAAGCATCATCTTTTTGGTAGCAAACACATATGTCCTAATAATGATCTTGGTGAATCATAAGTTTTGTCCTCTTTTTCAACAGAAAGCAGCAATTACTGCTGATGGATATGGAAACAAGTGTGACTGA___GAGAGACAACTGGCCAATTTAGTCCAGTGATAGTCCAAATGCAATTGAAGTTGTGTGTTATGTTTGCTTACT

Fln Alignment:

sp_v1.1_unigene1709___IYLHHEHEFTIVERLMAFLPQFTVQLVLVLFFAKDLPLCLFAQTVAFVAFNKVITAQYFVWFFCLLPLILPWTKLHLQWKGLLCIGVWVAAQIHWLSWAYLLEFKGINVFVQLWLASIIFLVANTYVLIMILVNHKFCPLFQQKAAITADGYGNKCD
B8LMK7______________IYLHHEHEFTLVERLMAFLPQFSVQLVLVLFFAKDLPLCLFAQTVAFVAFNKVITAQYFVWFFCLLPLILPWTKLHLQWKGLVCIGLWVAAQIHWLSWAYLLEFKGINVFVQLWLASIVFLVAYTCVLIMILVNHKFCPLFRQKVAITDDGCGNKSD

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
381	15	84			0.999986
387		16		83	0.999991
392	10			90	0.90298
393	10			90	0.90298
395			10	90	0.90298
397		10	90		0.90298
399	90	10			0.90298
400	90		10		0.90298
401	10		90		0.90298
403	90		10		0.90298
446			11	88	0.923564
447	11			88	0.923564
449			88	11	0.923564
450		88	11		0.923564
452	88	11			0.923564
455	88	11			0.923564
456	88	11			0.923564
460	88		11		0.923564
461	88			11	0.923564
464	88	11			0.923564
465			88	11	0.923564
466		77	11		0.968132
468		88	11		0.923564
469		77	11	11	0.968132
470	75	12	12		0.975346
471	12	12	75		0.975346
474			12	87	0.992554
475		14	85		0.993533
478	14	85			0.993533
479		85	14		0.993533
482		14	85		0.993533
486			14	85	0.993533
487	14		85		0.993533
488		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain