SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1663

Length: 2220 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1663
ATGGGGGGAGACGTCAATGGAAGCGTTATGAGGAACCGATGAGAGGCTTGTTGGAAAAATCCGACAGAGAGCTTTTATCTTGATGACAACCTGGTTTCAGTAAGACCGGGGAAGCGGTGAAATTATTCCTCGGTGACTTTATCTGTGATGGTAAGAGGCACAAGTTGTGGATAGCCAAGTATTTAAAGAGCAGATATTACCATCGCATGAAATGGCACATGTATCTGGCGCGGCGAGAGCAGGCGCCATGATGTTTGGAAGCAATGCTCTTGTGTGTGCCAATAGATGGCTGCTGCTAAACCCTTCTCTAACTTTCAGACCGCCTCAAACGTGGTACCAATATTCCCCCAACACCAGTTTAATCATCATAAGTCAGCGTCCTCCTGTACGTTGGGGTCGTCGTTGTCTCTGCATATCTCAGGCGAATGAAGCTTCTTCTACTGGTGCTACAGTCACAACAAATACTTATATGGAGGAAGGAGAGGTCTCCATTATGGACAAGAAGTGTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATCGATGTTAATCCTCCACGTGGAACCAGAGATTTTCTGCCAGAGGACATGCGGCTTCGCAAATGGCTTTTTCAAAAGTTTCGAGAAGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTCGAATCTGAAGCACTTTTTGTGAGAAAATCAGGGGAAGAGATAACAGAACAGCTCTACAGTTTTGTAGACAAGGGTGGTCGGCGGGTTGCACTTCGGCCAGAGCTGACACCGTCTTTAGCTCGGGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCTCTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGGATGACCAGAGGAAGACGCCGAGAACATTACCAATGGAATATGGATATATTTGGAGTTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAATTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATGGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGACAAGATTGAGAAAATGCCTATAGAAGACATAAAAAAGGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCATGCTTTGTCATTAAGATCACTAGCTGAATTAGAAGAGTTCCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACTACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCGTCAGTTGTTCGTGGCCTTGCTTATTACACAGGGACTGTTTTTGAGGGTTTTGACAAAGATCGGAAACTTCGAGCAATATGTGGAGGTGGACGGTATGACTGCCTTCTTTCTACTTTTGGTGGCTCTGACATCCCGGCATGTGGTTTTGGTTTTGGAGATGCTGTCATTATGGAATTGCTTAGGGAGAAAAATTTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGCAGCTGCCATGGTGGCATCCAATTTACGAAAGAAAGGGCGCATTGTGGATCTCATTCTCGAGGACAAACGCCTGAAATGGGCATTTAAGCATGCAGAAAGAGTAAATGCAAAGAGGTTGTTTCTTGTCGGGCAAGCTGAGTGGGAATGTGGTGCTGTGCGTGTAAAAGATCTTGCAACTAGAGAAGAATCTGATATATTGATTAGTGATTTATTATAAAACTCTACCTTTCATATCTATTTCTTCAACAATAGATCTCAACATATTTATGATCTTGCAAAGTTTCGAAGGGGGGAAGCAATCTTGTCCAATTTTTCGATCCTTGGATTTTTCTTACATGCATATGTACCTAGAGTTGATGCACATTCAGATTGGAGAAATAGCATGTTATGGAGGTTGGAGATAGAAAAGAGAGATTTATTGGTTGGTCGTAGGCACATGTTTGGAAGGAGACACAAAAACATTTGTCCATTGTAAGAAAGTATTATTCTTTATTTTTTATCTGTAGAGAAATGTTATTTCATATGCTTCTCAAGTATTCAAATTGAGAGATATCCACATTATTAAAATGGAGCTAATGAGTAAGAAATATTGCTTACAAGTTCTGCAGTGCAGAGGAAAAC

Ace file of the UniGene sp_v1.1_unigene1663

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histidyl-tRNA synthetase n=2 Tax=Andropogoneae RepID=B6TS97_MAIZE	-	-	65%
FL-Next	tr=Putative uncharacterized protein Sb03g003570; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	69%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	80%
Blast2go	catalytic activity	GO:0003824	Molecular Function	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	80%
Blast2go	Anticodon-binding	IPR004154	-	80%
Blast2go	Histidyl-tRNA synthetase, class IIa	IPR004516	-	80%
Blast2go	Aminoacyl-tRNA synthetase, class II	IPR006195	-	80%
Blast2go	Histidyl-tRNA synthetase, class IIa, subgroup	IPR015807	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: C5XMM1

Fln msg: your sequence is longer than subject: 535 - 486

Fln protein: MAHVSGAARAGAMMFGSNALVCANRWLLLNPSLTFRPPQTWYQYSPNTSLIIISQRPPVRWGRRCLCISQANEASSTGATVTTNTYMEEGEVSIMDKKCGRSTVSASPLNHGEVIDVNPPRGTRDFLPEDMRLRKWLFQKFREVSRLFAFEEVDFPVLESEALFVRKSGEEITEQLYSFVDKGGRRVALRPELTPSLARVVMQKGKALSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIFGVSGIEAEAELLSAIVTFFKQLGITSSDVGIKVSSRKVLEAVMEHHSIPKDSFSAVCVMVDKIEKMPIEDIKKELRVAGIPSDAVEGILHALSLRSLAELEEFLGSDSGAVAELKLLFSFANEYGYADWLQFDASVVRGLAYYTGTVFEGFDKDRKLRAICGGGRYDCLLSTFGGSDIPACGFGFGDAVIMELLREKNLIPILTQEIDDIVFPLNGELKQAAAMVASNLRKKGRIVDLILEDKRLKWAFKHAERVNAKRLFLVGQAEWECGAVRVKDLATREESDILISDLL*

Protein Length: 536

Fln nts: ATGGGGGGAGACGTCAATGGAAGCGTTATGAGGAACCGATGAGAGGCTTGTTGGAAAAATCCGACAGAGAGCTTTTATCTTGATGACAACCTGGTTTCAGTAAGACCGGGGAAGCGGTGAAATTATTCCTCGGTGACTTTATCTGTGATGGTAAGAGGCACAAGTTGTGGATAGCCAAGTATTTAAAGAGCAGATATTACCATCGCATGAA_-_ATGGCACATGTATCTGGCGCGGCGAGAGCAGGCGCCATGATGTTTGGAAGCAATGCTCTTGTGTGTGCCAATAGATGGCTGCTGCTAAACCCTTCTCTAACTTTCAGACCGCCTCAAACGTGGTACCAATATTCCCCCAACACCAGTTTAATCATCATAAGTCAGCGTCCTCCTGTACGTTGGGGTCGTCGTTGTCTCTGCATATCTCAGGCGAATGAAGCTTCTTCTACTGGTGCTACAGTCACAACAAATACTTATATGGAGGAAGGAGAGGTCTCCATTATGGACAAGAAGTGTGGACGATCAACTGTTTCTGCTTCTCCTCTGAATCATGGGGAAGTTATCGATGTTAATCCTCCACGTGGAACCAGAGATTTTCTGCCAGAGGACATGCGGCTTCGCAAATGGCTTTTTCAAAAGTTTCGAGAAGTTTCCAGATTATTTGCATTTGAAGAAGTTGATTTCCCAGTTCTCGAATCTGAAGCACTTTTTGTGAGAAAATCAGGGGAAGAGATAACAGAACAGCTCTACAGTTTTGTAGACAAGGGTGGTCGGCGGGTTGCACTTCGGCCAGAGCTGACACCGTCTTTAGCTCGGGTGGTTATGCAAAAGGGGAAAGCGTTGTCACTTCCTCTCAAATGGTTTGCGATAGGACAATGTTGGCGTTATGAAAGGATGACCAGAGGAAGACGCCGAGAACATTACCAATGGAATATGGATATATTTGGAGTTTCAGGCATAGAGGCTGAAGCAGAACTCCTTTCTGCTATTGTTACATTCTTCAAGCAACTTGGAATTACATCATCTGATGTGGGGATCAAAGTTTCCAGTCGAAAGGTTCTTGAAGCTGTGATGGAGCATCATTCCATACCCAAAGATTCATTTTCAGCAGTTTGTGTCATGGTTGACAAGATTGAGAAAATGCCTATAGAAGACATAAAAAAGGAATTGAGAGTTGCTGGAATTCCATCAGATGCAGTTGAAGGAATTCTGCATGCTTTGTCATTAAGATCACTAGCTGAATTAGAAGAGTTCCTTGGTTCGGACAGTGGGGCAGTTGCTGAACTGAAACTACTATTTTCTTTTGCAAATGAATATGGTTATGCTGATTGGCTTCAGTTTGATGCGTCAGTTGTTCGTGGCCTTGCTTATTACACAGGGACTGTTTTTGAGGGTTTTGACAAAGATCGGAAACTTCGAGCAATATGTGGAGGTGGACGGTATGACTGCCTTCTTTCTACTTTTGGTGGCTCTGACATCCCGGCATGTGGTTTTGGTTTTGGAGATGCTGTCATTATGGAATTGCTTAGGGAGAAAAATTTGATCCCAATTCTAACTCAGGAAATAGATGACATAGTTTTCCCTTTGAATGGAGAGCTTAAGCAAGCAGCTGCCATGGTGGCATCCAATTTACGAAAGAAAGGGCGCATTGTGGATCTCATTCTCGAGGACAAACGCCTGAAATGGGCATTTAAGCATGCAGAAAGAGTAAATGCAAAGAGGTTGTTTCTTGTCGGGCAAGCTGAGTGGGAATGTGGTGCTGTGCGTGTAAAAGATCTTGCAACTAGAGAAGAATCTGATATATTGATTAGTGATTTATTATAA___AACTCTACCTTTCATATCTATTTCTTCAACAATAGATCTCAACATATTTATGATCTTGCAAAGTTTCGAAGGGGGGAAGCAATCTTGTCCAATTTTTCGATCCTTGGATTTTTCTTACATGCATATGTACCTAGAGTTGATGCACATTCAGATTGGAGAAATAGCATGTTATGGAGGTTGGAGATAGAAAAGAGAGATTTATTGGTTGGTCGTAGGCACATGTTTGGAAGGAGACACAAAAACATTTGTCCATTGTAAGAAAGTATTATTCTTTATTTTTTATCTGTAGAGAAATGTTATTTCATATGCTTCTCAAGTATTCAAATTGAGAGATATCCACATTATTAAAATGGAGCTAATGAGTAAGAAATATTGCTTACAAGTTCTGCAGTGCAGAGGAAAAC

Fln Alignment:

sp_v1.1_unigene1663___STVSASPLNHGE----------VIDVNPPRGTRDFLPEDMRLRKWLFQKFREVSRLFAFEEVDFPVLESEALFVRKSGEEITEQLYSFVDKGGRRVALRPELTPSLARVVMQKGKALSLPLKWFAIGQCWXXXXXXXXXXXEHYQWNMDIFGVSGIEAEAELLSAIVTFFKQLGITSSDVGIKVSSRKVLEAVMEHHSIPKDSFSAVCVMVDKIEKMPIEDIKKELRVAGIPSDAVEGIXXXXXXXXXXXXXXXXGSDSGAVAELKLLFSFANEYGYADWLQFDASVVRGLAYYTGTVFEGFDKDRKLRAICGGGRYDCLLSTFGGSDIPACGFGFGDAVIMELLREKNLIPILTQEIDDIVFPLNGELKQAAAMVASNLRKKGRIVDLILEDKRLKWAFKHAERVNAKRLFLVGQAEWECGAVRVKDLATREESDILISDL
C5XMM1______________SAASSSTLTHGDAASTNGDADGVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSRLMAFEEVDFPVLESEALFIRKAGEEITQQLYNFEDKGGRRVVLRPEITPSLARLVIKQGKSVSLPLKWFTIGQCWRYERMTRGRRREHYQWNMDIFGVPKVRAEAELLNAIVLLFQHLGITSSDVGIRVSSRKVLQAVLNMYSIPEHLFTEVCVIVDKLGKMTREEIEKELISTGLSSEAVQGIIDVLSLKSLSKLEEVVGSDVEAVADLKKLFSFAEQYGYADWICFDASVVRGLAYYTGIVFEAFDREGKLRAICGGGRYDRLLSTFGSEDIPACGFGFGDAVIVELLKEKGLLPDMSRQIDDIVFPLDEELEGPASSIAASLRKKGRSVDLV-EDKRLKWVFKHAERINASRLILVGNSEWERGMVRVKILSTREEFEVKAGEL

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1920		84		15	0.999986
2058	90		10		0.90298
2128	33		66		0.997452
2160		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain