SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1640

Length: 1243 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1640

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein-s isoprenylcysteine O-methyltransferase, putative (EC:2.1.1.100)	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	protein-s isoprenylcysteine o-	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.1.1.10-	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	C-terminal protein methylation	GO:0006481	Biological Process	76%
Blast2go	flower development	GO:0009908	Biological Process	76%
Blast2go	shoot development	GO:0048367	Biological Process	76%
Blast2go	carboxyl-O-methyltransferase activity	GO:0010340	Molecular Function	76%
Blast2go	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	GO:0004671	Molecular Function	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Q3

Fln msg: your sequence is longer than subject: 228 - 177

Fln protein: MIVPLQRMSDFYSKLFEQFSHLDYRIFHTNPMALLGPVAARQLGQMLIALLFFHISEYVLAVIIHGASRVNLASLLISKQYILAMVCGLIEYAIEFTFVPDLKMQWWLSNIGLVMVVAGELVRKTGILTARRGFTHDIKMYLRDDHELVTHGIYRYIRHPGYSGFFIWSVGTQVMLCNPLCTIGYALVTWRFFEKRIRYEEFFLRQFFGHQYVEYAKKVPSGIPFIK*

Protein Length: 229

Fln nts: TGGGGGAATCGAAGTGGAGGGTTGAGCATATCTTTGCACACTAATTAGAAGTGCTGTCATTACGCAGCCAGCTATATTTATACAGGTCCCTTTATCTCGGCAACCACCA_-_ATGATTGTTCCATTGCAGAGGATGTCTGATTTCTATAGCAAACTTTTCGAACAGTTTTCCCATTTGGATTACAGAATCTTCCACACAAATCCCATGGCGTTATTGGGTCCAGTTGCTGCACGACAGTTAGGCCAGATGTTAATAGCTCTGCTATTCTTCCACATCTCCGAGTATGTATTGGCTGTGATCATCCATGGAGCATCCAGAGTGAATCTAGCCTCATTACTTATCAGCAAGCAATATATTCTTGCTATGGTCTGTGGGTTGATAGAATATGCCATAGAATTTACTTTTGTTCCAGACTTGAAGATGCAGTGGTGGCTAAGCAACATAGGCCTTGTAATGGTTGTGGCTGGAGAATTGGTACGCAAAACTGGTATACTTACCGCTCGCCGCGGCTTTACACATGATATCAAAATGTACCTCCGAGATGACCATGAATTGGTCACTCATGGCATTTACAGGTATATACGTCATCCAGGATATTCTGGGTTTTTCATTTGGTCAGTTGGAACTCAAGTGATGCTTTGTAACCCATTGTGCACAATTGGCTATGCACTTGTTACTTGGCGTTTCTTTGAAAAACGAATTAGATACGAGGAATTCTTCTTGCGCCAGTTCTTTGGTCACCAATATGTAGAGTATGCAAAGAAAGTACCTTCTGGAATACCTTTTATAAAGTGA___ATCTTTCTGGAACTTGGGATGAAAAAAACTGGACTTTGAGAAGTGGTTTTGAGGCTGAACCTGAATAAGCAGATACCCAGTTTCTTTTTGATATACATGGTTTGCCAAGCATAGAAGGGAACATAGCTGGCTTATGTTCTCCTGAGGTGACAACGAGGTGTCTCCGTTAACAAGTAGATTGTGAACTGTGTCACCTGTGCAAATTAAACAGTGGACGCTGTTGGACTCCAGATCACTGCCCCTGATTGGCAGTTGCAACCAACTAAGAAATGAAATCAAACAAAGTTTGCCATTATGATAGGCTTGGGAATGGTTCCTCAATTTGTTTACACTCATTTTCTTGTAGCAGTATTGGAAGGAATAAATCTGGAAGGTGACGTGCTGTTAATATTTTAATGTAGAATGCTTGATTGTCTCTTAACTTTTAAGTATATATATATATATATATAC

Fln Alignment:

sp_v1.1_unigene1640___MSDFYSKLFEQFSHLDYRIFHTNPMALLGPVAARQLGQMLIALLFFHISEYVLAVIIHGASRVNLASLLISKQYILAMVCGLIEYAIEFTFVPDLKMQWWLSNIGLVMVVAGELVRKTGILTARRGFTHDIKMYLRDDHELVTHGIYRYIRHPGYSGFFIWSVGTQVMLCNPLCTIGYALVTWRFFEKRIRYEEFFLRQFFGHQYVEYAKKVPSGIPFIK
D5A8Q3______________MSDFYSKPFEQVFHLDRKIFHTNPMALLGPVATRQLSQLFIALLFFHISEFILAVIIHGASRVNLNSFLVSNQYIFAMICGLIEYAIEYTFVPELKMQWWVSNIGLVMVVTGELVRKTGIITARRGFTHDIKMYLRDDHELVTNGIYR-------------------------------------------YEEFFLRRFFNYQYVEYAQGVPSGIPFIK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
100	20		80		0.995493
101		80		20	0.995493
102	60		20	20	0.99255
103	60		40		1.0
104		60	20	20	0.99255
105		80	20		0.995493
107		83	16		0.994512
108			16	16	0.988813
109		83	16		0.994512
110	16		16		0.988813
117		50		50	1.0
330		90	10		0.90298
333	90		10		0.90298
335			10	90	0.90298
343	90		10		0.90298
346	90			10	0.90298
347	90		10		0.90298
348			90	10	0.90298
351	90	10			0.90298
353	90	10			0.90298
354	10			90	0.90298
414		87		12	0.992554
443		12		87	0.992554
932		20		80	0.995493
939	12	87			0.992554
942	87		12		0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
1223	1242	TA TA TA TA TA TA TA TA TA TA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain