SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1607

Length: 3332 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1607
CGTCCTCAAAAGAAAAACACCGGCAGATTCACATTGGCTACTGCATCATTTATTTCTATGCAAAACTTTGGACTGGTTATGTGAGATCGTATACGTCTGTCCGTGGATAGCAGTTGAAGAACGAAGATCAACCGAGAGATTTGCCAGACAAAAATGAGCGGCCATGACTCCAAGTATTTCTCTACCACCAAAAAAGGGGAGATCCCAGAGCTTAAGGACGAGCTCAATTCTCAGTACAAGGATAAGAAAAAAGATGCAGTGAAGAAGGTAATAGCTGCAATGACAGTTGGAAAAGATGTTTCATCACTGTTCACGGATGTCGTGAATTGCATGCAAACAGACAATTTGGAGCTGAAGAAGCTTGTCTATCTATATCTTATTAACTACGCTAAAAGTCAACCTGACCTTGCCATACTTGCAGTGAATACTTTTGTCAAGGATTCCCAAGATCCAAATCCTTTGATTCGTGCTCTAGCTGTACGAACAATGGGTTGTATTCGGGTTGACAAAATCACAGAGTATTTGTGTGATCCGCTTCAAAGATGCCTCAAGGATGATGATCCTTACGTGCGAAAGACGGCTGCTATATGTGTTGCTAAACTTTATGATATTAATGCTGAACTGGTGGAGGATAGAGGGTTTCTAGAGACTCTTAAGGACTTGATTTCAGACAGCAATCCCATGGTTGTAGCGAATGCCGTGGCAGCACTGGCAGAGATCCAAGAAAACAGTAGTAGAGCAATATTTGAAATTACTAGTCACACACTTTTTAAACTTTTGGCGGCGCTCAATGAATGCACTGAATGGGGTCAAGTGTTTATACTAGATGCTCTTTCAAAATACAAGGCAAGTGATGCCCGAGATGCAGAGAACATTGTTGAACGTGTAACTCCTCGTCTTCAGCATGCCAACTGTGCAGTTGTACTTTCGGCTGTGAAGGTGATTCTGCAGCAAATGGAGCTTATTACAAGCACTGATGTTGTTAGAAACCTCTGTAAGAAAATGGCACCTCCATTAGTTACTCTCTTGTCGGCAGAGCCTGAGATCCAGTATGTTGCTTTAAGGAATATAAACCTTATTGTGCAACGGCGGCCTACTATTCTTGCACATGAAATCAAGGTCTTTTTTTGCAAGTACAATGATCCAATTTATGTGAAGATGGAAAAGTTAGAAATTATGATAAAACTTGCTTCAGATCGCAATATTGATCAGGTGCTGCTGGAGTTCAAGGAGTATGCAACAGAAGTAGATGTTGACTTTGTTAGAAAAGCTGTTCGTGCCATTGGACGATGTGCAATCAAACTAGAGAGGGCTGCAGAACGCTGCATAAGTGTATTGCTTGAGCTGATAAAGATCAAAGTTAACTATGTTGTACAAGAAGCCATCATTGTAATCAAGGATATTTTTAGGCGTTATCCTAATACCTATGAGTCGATTATTGCAACTCTCTGTGAGAGCTTGGACACTCTTGATGAGCCAGAAGCCAAGGCATCCATGATCTGGATTATCGGTGAATATGCAGAAAGGATTGACAATGCCGATGAATTGCTTGAAAGCTTTTTGGAGACTTTTCCTGAGGAGCCAGCTCAAGTGCAATTGCAGTTACTCACTGCCACTGTCAAATTATTCCTTAAGAAGCCTACTGAAGGACCTCAGCAAATGATTCAGGTTGTACTTAACAATGCCACCCAAGAAACTGACAATCCAGATCTACGTGATCGTGCATACATTTACTGGCGGCTTCTTTCAACTGATCCAGAGGCAGCAAAGGATGTTGTATTGGCTGAGAAACCAGTTATTAGTGATGACTCAAATCAGCTTGATCCATCACTTCTTGATGAACTTCTTGCAAATATTGCGACTCTTGCTTCTGTATATCATAAACCTCCTGATTCTTTTGTAAGCCGTGTTAAGCCAACAGTACAGCGGCCAGAAGATGAGGAAGAATTTCCTGATGGGCTTGATGCAGGCCCCTCAGAATTATCAGCCACTGAGGCAGAAATCAATGCTTCGCCTGCCCGAGGTCCAAGCAATGTTCCCAATGTTCCATCAAAAGCAGTACCCACAGCAGCAACTCCAGCTCCAGCTCCTGTCCCAGATCTTCTTGGTGATTTGATAGGTTTAGACAATGCACTTGTCCCTGTAGATCAGCCAGCAGCAGGCTCTGGGCCTCCATTACCTGTTTTACTTGCAGCATCAGCAGGCCAAGGCCTTCAGATCAATGGGCAGCTTATACGGCGTGATGGTCAAATTTTTTACAGCTTGAAGTTTGAGAATAATTCTTTGACACCTTTGGATGGGTTTATGATACAGTTTAACAAGAATACATTCGGTCTTGCAGCTGCTGGACCTCTACAGGTGCCACTATTGCAGCCTGGGAGCTCAGCACACACACTGCTGCCAATGGTATTGTTTCAAAGCATATCTCCTGGACCAGCAAATACTCTCTTGCAGGTGGCTGTCAAAAATAATCAACAACCTGTCTGGTATTTTAATGATAATATTCCATTTGAAGTTTTCTTCACTGAGGATGGCAGGATGGAGCGTGCAACGTTTCTGGAGACATGGAAATCACTACCCGACTCTCACGAGATTGTCAAGGACCTACCGAACAGCTTCATAAGTAATATGGATGCTACACTTGAGAAATTGACTGGAGCTAACATGTTTTTCATTGCCAAGCGTCCATTGAGGGATACCAATCAAGAGGTTATTTATTTTTCTGCAAAGCTGCCACGTAGTATCCCGATATTAATAGAGATAACTGTAATGGTTGGGCGTCCGGGCGTGAAATGTGCAATCAAGACTCCGAATCCAGATATGGCTCCTCTTTTCTTTGAAGCTCTTGAAGCTCTTTTGAAATGACAGCATTTATTCTCAACTCAAACTCATAGCTTTTCACTTCCGAATTCATCGGTGATGTTAGATGGACAACTGATCTTGTGGTCAGTGGTCATTATGGCTCCGAGAGATTTGAGGTTTGAGGTTTGCAGCTTTTGGCTTATTCAGGGTGTACAATTTTCTTAGTGGACTTTGTACTCTACAACCATCATTTATTTCATTAGTTGTGTAATATAGCTGTGCATCTCTTGCAAGTTTGCACGCAGTACACCACACCCATTCTGGTTTTCGTGGTTTCTTGTGCAACAAAAGCCGAATTTTAAGTTCAGCACAATGTGGCTTTTCTGTCTGAAGATTTACAATAACAATATTCTCTTAATTTTTTGAGATATGGACTTATCATTGAGGCTTCGGTATGTATTCAGAGGTTAACTATAATGAATTAAAAATTCAACTTATTGTGACTGGTAAATAGATAAATTAATAATTAC

Ace file of the UniGene sp_v1.1_unigene1607

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AP-2 complex subunit beta-1, putative; K12392 AP-1 complex subunit beta-1	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	90%
Blast2go	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	IPR008152	-	90%
Blast2go	Coatomer/calthrin adaptor appendage, C-terminal subdomain	IPR009028	-	90%
Blast2go	Armadillo-like helical	IPR011989	-	90%
Blast2go	Beta2-adaptin/TBP, C-terminal domain	IPR012295	-	90%
Blast2go	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	IPR013037	-	90%
Blast2go	Coatomer/clathrin adaptor appendage, Ig-like subdomain	IPR013041	-	90%
Blast2go	Beta-adaptin appendage, C-terminal subdomain	IPR015151	-	90%
Blast2go	Armadillo-type fold	IPR016024	-	90%
Blast2go	Adaptor protein complex, beta subunit	IPR016342	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNI5

Fln msg:

Fln protein: MSGHDSKYFSTTKKGEIPELKDELNSQYKDKKKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSRAIFEITSHTLFKLLAALNECTEWGQVFILDALSKYKASDARDAENIVERVTPRLQHANCAVVLSAVKVILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATQETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLASVYHKPPDSFVSRVKPTVQRPEDEEEFPDGLDAGPSELSATEAEINASPARGPSNVPNVPSKAVPTAATPAPAPVPDLLGDLIGLDNALVPVDQPAAGSGPPLPVLLAASAGQGLQINGQLIRRDGQIFYSLKFENNSLTPLDGFMIQFNKNTFGLAAAGPLQVPLLQPGSSAHTLLPMVLFQSISPGPANTLLQVAVKNNQQPVWYFNDNIPFEVFFTEDGRMERATFLETWKSLPDSHEIVKDLPNSFISNMDATLEKLTGANMFFIAKRPLRDTNQEVIYFSAKLPRSIPILIEITVMVGRPGVKCAIKTPNPDMAPLFFEALEALLK*

Protein Length: 905

Fln nts: CGTCCTCAAAAGAAAAACACCGGCAGATTCACATTGGCTACTGCATCATTTATTTCTATGCAAAACTTTGGACTGGTTATGTGAGATCGTATACGTCTGTCCGTGGATAGCAGTTGAAGAACGAAGATCAACCGAGAGATTTGCCAGACAAAA_-_ATGAGCGGCCATGACTCCAAGTATTTCTCTACCACCAAAAAAGGGGAGATCCCAGAGCTTAAGGACGAGCTCAATTCTCAGTACAAGGATAAGAAAAAAGATGCAGTGAAGAAGGTAATAGCTGCAATGACAGTTGGAAAAGATGTTTCATCACTGTTCACGGATGTCGTGAATTGCATGCAAACAGACAATTTGGAGCTGAAGAAGCTTGTCTATCTATATCTTATTAACTACGCTAAAAGTCAACCTGACCTTGCCATACTTGCAGTGAATACTTTTGTCAAGGATTCCCAAGATCCAAATCCTTTGATTCGTGCTCTAGCTGTACGAACAATGGGTTGTATTCGGGTTGACAAAATCACAGAGTATTTGTGTGATCCGCTTCAAAGATGCCTCAAGGATGATGATCCTTACGTGCGAAAGACGGCTGCTATATGTGTTGCTAAACTTTATGATATTAATGCTGAACTGGTGGAGGATAGAGGGTTTCTAGAGACTCTTAAGGACTTGATTTCAGACAGCAATCCCATGGTTGTAGCGAATGCCGTGGCAGCACTGGCAGAGATCCAAGAAAACAGTAGTAGAGCAATATTTGAAATTACTAGTCACACACTTTTTAAACTTTTGGCGGCGCTCAATGAATGCACTGAATGGGGTCAAGTGTTTATACTAGATGCTCTTTCAAAATACAAGGCAAGTGATGCCCGAGATGCAGAGAACATTGTTGAACGTGTAACTCCTCGTCTTCAGCATGCCAACTGTGCAGTTGTACTTTCGGCTGTGAAGGTGATTCTGCAGCAAATGGAGCTTATTACAAGCACTGATGTTGTTAGAAACCTCTGTAAGAAAATGGCACCTCCATTAGTTACTCTCTTGTCGGCAGAGCCTGAGATCCAGTATGTTGCTTTAAGGAATATAAACCTTATTGTGCAACGGCGGCCTACTATTCTTGCACATGAAATCAAGGTCTTTTTTTGCAAGTACAATGATCCAATTTATGTGAAGATGGAAAAGTTAGAAATTATGATAAAACTTGCTTCAGATCGCAATATTGATCAGGTGCTGCTGGAGTTCAAGGAGTATGCAACAGAAGTAGATGTTGACTTTGTTAGAAAAGCTGTTCGTGCCATTGGACGATGTGCAATCAAACTAGAGAGGGCTGCAGAACGCTGCATAAGTGTATTGCTTGAGCTGATAAAGATCAAAGTTAACTATGTTGTACAAGAAGCCATCATTGTAATCAAGGATATTTTTAGGCGTTATCCTAATACCTATGAGTCGATTATTGCAACTCTCTGTGAGAGCTTGGACACTCTTGATGAGCCAGAAGCCAAGGCATCCATGATCTGGATTATCGGTGAATATGCAGAAAGGATTGACAATGCCGATGAATTGCTTGAAAGCTTTTTGGAGACTTTTCCTGAGGAGCCAGCTCAAGTGCAATTGCAGTTACTCACTGCCACTGTCAAATTATTCCTTAAGAAGCCTACTGAAGGACCTCAGCAAATGATTCAGGTTGTACTTAACAATGCCACCCAAGAAACTGACAATCCAGATCTACGTGATCGTGCATACATTTACTGGCGGCTTCTTTCAACTGATCCAGAGGCAGCAAAGGATGTTGTATTGGCTGAGAAACCAGTTATTAGTGATGACTCAAATCAGCTTGATCCATCACTTCTTGATGAACTTCTTGCAAATATTGCGACTCTTGCTTCTGTATATCATAAACCTCCTGATTCTTTTGTAAGCCGTGTTAAGCCAACAGTACAGCGGCCAGAAGATGAGGAAGAATTTCCTGATGGGCTTGATGCAGGCCCCTCAGAATTATCAGCCACTGAGGCAGAAATCAATGCTTCGCCTGCCCGAGGTCCAAGCAATGTTCCCAATGTTCCATCAAAAGCAGTACCCACAGCAGCAACTCCAGCTCCAGCTCCTGTCCCAGATCTTCTTGGTGATTTGATAGGTTTAGACAATGCACTTGTCCCTGTAGATCAGCCAGCAGCAGGCTCTGGGCCTCCATTACCTGTTTTACTTGCAGCATCAGCAGGCCAAGGCCTTCAGATCAATGGGCAGCTTATACGGCGTGATGGTCAAATTTTTTACAGCTTGAAGTTTGAGAATAATTCTTTGACACCTTTGGATGGGTTTATGATACAGTTTAACAAGAATACATTCGGTCTTGCAGCTGCTGGACCTCTACAGGTGCCACTATTGCAGCCTGGGAGCTCAGCACACACACTGCTGCCAATGGTATTGTTTCAAAGCATATCTCCTGGACCAGCAAATACTCTCTTGCAGGTGGCTGTCAAAAATAATCAACAACCTGTCTGGTATTTTAATGATAATATTCCATTTGAAGTTTTCTTCACTGAGGATGGCAGGATGGAGCGTGCAACGTTTCTGGAGACATGGAAATCACTACCCGACTCTCACGAGATTGTCAAGGACCTACCGAACAGCTTCATAAGTAATATGGATGCTACACTTGAGAAATTGACTGGAGCTAACATGTTTTTCATTGCCAAGCGTCCATTGAGGGATACCAATCAAGAGGTTATTTATTTTTCTGCAAAGCTGCCACGTAGTATCCCGATATTAATAGAGATAACTGTAATGGTTGGGCGTCCGGGCGTGAAATGTGCAATCAAGACTCCGAATCCAGATATGGCTCCTCTTTTCTTTGAAGCTCTTGAAGCTCTTTTGAAATGA___CAGCATTTATTCTCAACTCAAACTCATAGCTTTTCACTTCCGAATTCATCGGTGATGTTAGATGGACAACTGATCTTGTGGTCAGTGGTCATTATGGCTCCGAGAGATTTGAGGTTTGAGGTTTGCAGCTTTTGGCTTATTCAGGGTGTACAATTTTCTTAGTGGACTTTGTACTCTACAACCATCATTTATTTCATTAGTTGTGTAATATAGCTGTGCATCTCTTGCAAGTTTGCACGCAGTACACCACACCCATTCTGGTTTTCGTGGTTTCTTGTGCAACAAAAGCCGAATTTTAAGTTCAGCACAATGTGGCTTTTCTGTCTGAAGATTTACAATAACAATATTCTCTTAATTTTTTGAGATATGGACTTATCATTGAGGCTTCGGTATGTATTCAGAGGTTAACTATAATGAATTAAAAATTCAACTTATTGTGACTGGTAAATAGATAAATTAATAATTAC

Fln Alignment:

sp_v1.1_unigene1607___MSGHDSKYFSTTKKGEIPELKDELNSQYXXXXXXXXXXXXXXMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSRAIFEITSHTLFKLLAALNECTEWGQVFILDALSKYKASDARDAENIVERVTPRLQHANCAVVLSAVKVILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATQETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLASVYHKPPDSFVSRVKPTVQRPEDEEEFPDGLDAGPSELSATEAEINASPARGPSNVPNVPSKXXXXXXXXXXXXXXDLLGDLIGLDNALVPVDQPAAGSGPPLPVLLAASAGQGLQINGQLIRRDGQIFYSLKFENNSLTPLDGFMIQFNKNTFGLAAAGPLQVPLLQPGSSAHTLLPMVLFQSISPGPANTLLQVAVKNNQQPVWYFNDNIPFEVFFTEDGRMERATFLETWKSLPDSHEIVKDLPNSFISNMDATLEKLTGANMFFIAKRPLRDTNQEVIYFSAKLPRSIPILIEITVMVGRPGVKCAIKTPNPDMAP
B8LNI5______________MSGHDSKYFSTTKKGEIPELKDELNSQYKDKKKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTDNLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLETLKDLISDSNPMVVANAVAALAEIQENSSRTIFEITSHTLFKLLAALNECTEWGQVFILDALSKYKASDARDAENIVERVTPRLQHANCAVVLSAVKVILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLETFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATQETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLASVYHKPPDAFVSRVKPAVQRPEDEEEFPDGLDAGPSELSATETEINASPARGPSNVPHVPTKAVPTAAAPPPAPVPDLLGDLIGLDNALVPVDQPTVGSGPPLPVLLASSAGQGLQINGQLIRRDGQIFYSFKFENNSLTPLDGFMIQFNKNSFGLAAGGALQVPPLQPGSSANTLLPMVLFQNISPGPANTLLQVAVKNNQQPVWYFNDNVPFEVFFTEDGRMERATFLETWKSLPDSHEIVRDLPNSFISNMDATLEKLAGANLFFIAKRPLRDTNQEVIYFSAKLPRNIPILVEITVLVGRPGVKCAIKTPNPDMGP

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
271		11		88	0.923564
355		11		88	0.923564
357	88			11	0.923564
358	88	11			0.923564
360	77		11		0.968132
362		11	88		0.923564
367			12	87	0.992554
370	87		12		0.992554
374	87	12			0.992554
375	12			87	0.992554
408		87		12	0.992554
410		12		87	0.992554
413	12	87			0.992554
414	87		12		0.992554
416	87		12		0.992554
417	12	87			0.992554
418			12	87	0.992554
421	12	87			0.992554
422	75	12		12	0.975346
423	12		75	12	0.975346
424		12	12	75	0.975346
426	71	28			1.0
428	14	14		71	0.984337
429	83		16		0.994512
430		83		16	0.994512
431			16	83	0.994512
432	16			83	0.994512
433			16	83	0.994512
436	16			83	0.994512
442	83	16			0.994512
443		16		83	0.994512
582			85	14	0.999981
584		14		85	0.999981
585			85	14	0.999981
587	14			85	0.999981
788	33		66		1.0
928		25		75	1.0
950			71	28	1.0
1199	16			83	0.994512
1241	83		16		0.994512
1242	83		16		0.994512
1352	85		14		0.993533
1353	85		14		0.993533
1354	85		14		0.993533
1436	28		71		1.0
1446	85			14	0.993533
1447		85	14		0.993533
1448			14	85	0.993533
1449		85	14		0.993533
1486	12	87			0.992554
1487		87		12	0.992554
1488	87		12		0.992554
1489	87		12		0.992554
1756	88		11		0.923564
1761			88	11	0.923564
1804			88	11	0.923564
1805			11	88	0.923564
1807	88		11		0.923564
1873		87		12	0.992554
1927	87		12		0.992554
2501		12		87	0.992554
2582		14		85	0.993533
2844			93	6	0.999364
2845		93	6		0.999364
2848		6		93	0.999364
2850		6	93		0.999364
3221	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain