SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1562

Length: 2901 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1562
CGTCGTGACCTTGGCTGTCACTTGTTTTTAGTGTTTTTGAACGGTGGACACTATTTTTTTCCCCGGTTAAGGCACGATATTTTGTGAATTTATTGGCGTCGTGGTTTGAATCGGTCCGTAAGGTTGCATTGCCGGTCGCGGATGGATGATTTTGTGAAAATTGAGGAATCTTTGCGGCGGTCGGAAGGTTAAGATTCGTCGCCGTTGGAAGGGGACCTGGTTTAATGAAATGCGGAGGAGGTCGGGGCATTCTTGCTGATTTCTGAGGGCGTGTTTTTGTGTTAGGAGGTGTTGTGAGGTGTGCGAGCTTTTTTGTGGTCCGGTGTTAAAGATTCGGGTGAAGCTTTGTAAATTAGTGTGTTCGTTCTGATTTATTTGCTTGTTTTTCAATCTGATTGCTAAGGAGAAACGAAAATGTGTTCGATATGAAGAAAAGGGAAGGGTTCTGGTGGCAAATTTCGAGGTTTTGCTTAAATCTGGAGGTTGAATTTGACAGAGATTTTTATTAGTCATCCGCTTTTGTGCGCGGTGGTGAATGGGCTTAAAGCTGGAGAAGTTGTTAAATTTTGATAAACATTCGTGAGAATTGGTGGAATTTGGACCCTGCTTTGGTTTCTTTAATTGAGGAAAAAAATGGGGAGCGACGCAGTCTCTGCATCAAGGTTCTGGAATGAGGAAGATAAAGCCACGGTGAATTCGCTTTTAGGCCCTAGTGCTTTCGAGCACTTGATGGTGAGCTATGTTTCTTCCGAGGGGCTTGTTTCCGGGATCAATGATTGTGCATTACAACAGAAGTTACAAAACCTAGTGGAATCTTCGTCCTTTAACTGGACTTATGCCATCTTTTGGCAACTCTCCAGATCCAAAACTGGAGAAGTGGTTCTCGGATGGGGTGACGGTTCCTTCAAAGGGCCTCGGGAAGGTCAAGAAGCAGATCAAGCACGCGGTTTCGATCACAGATTCGCTGAAACAGACCAGCACCTGAAGAAAAAGGTATTACAAAAACTTCAAAGCTTCTTTGGGGGTGGGGGTGAAGAGGAAAATAATTTCGTGTCGGGATTAGATAATGTTTCTGATACGGAGATGTTTTATTTGGCATCCATGTACTACTCGTTCCCTCGGGGCATCGGCGTTCCTGGCCAAGCCCTCGCCAGCGGAAAATGTATCTGGCTGAATGAGCCAAGCAAATTGCCAACCAATCTTTGCTCTAGAGCATACCTGGCCAAAACAGGTGGCATTCAGACGCTTGTTTGTTTGCCAATGGAACATGGGGTTGTGGAAGTTGGGTCGGTCGAGATGATCAGGGAAAGTAAACATGCCATAGATAAAGTTAGATCTAGTTTCAATGAAAATGCCTGTGATGGAAATCGAGGTCAACAAGCAGTGAAGGGTTCTCTAGTTGTACCCTTCCCCCCAAATCCAATGAGGGTGAATGCTGTGAATGCCAAGACTGCTCCACCTCTAAAGCCTTCCCATGATTGGAAAATATTTGGCCAAGAACTCAGCAAATCTACCGAAGCTGTTGTCACCAAAGTGGAAGACAGAGATCGTCATTATCAGCCCGTTTTCCGTCCACCTTACGCCCATGCTGCTTCCTATGTAACAAACGAACAGAGAATGCCTTATTCAACTGTCAATCAGAATGGGTTGCAATCACCGAACTGGAGCCATATCAGTAATGGTGAGGCTGGGGAGATTTATAATACGCGTGATCTGATAAAACCTAGCAGAATTTCGCCACTTGGTGTTGCCGGCCCTTCGCTTAATGCAGTAACTGCTCGACCGTCCATTATGGAATCTGAGGAACACTCGGATGTGGAAGCCTCGGAGCGTAGGCCCGTGGTGGTTGAAGAGCGTAGACCAAGGAAAAGGGGAAGGAAACCAGCCAATGGAAGAGAAGAGCCCCTCAATCACGTGGAAGCAGAACGCCAAAGACGTGAGAAGCTTAACCAACGATTTTATGCATTGCGAGCAGTGGTGCCAAACATCTCAAAGATGGACAAAGCTTCATTATTAGGGGACGCAATTTCCTACATTCAAGAACTCCAGAGTAAAGTCAAGGATATGGAAACCGAAAGAGAGAAACAGCAGCAGCCACAGCCGCAGCAGGCTAAGTCCAACATACAGGATGGCAGAATCGTTGATCCTATTTCTGATATTGATGTTCAAATGACGACTGGGGAGGCCACTGTCAGAGTAAGCTGTGCAAAGGAAAGCCATCCCGTTGGTAGAGTAATGCTTGCATTGCAAAGACTACAATTAGATGTTCATCATGCAAATATATCTGCTGCAAATGAAAATATCCTCCATACATTTGTGATTAAGCTGGGCGGAACCCAGACATTAACTAAGGACCAATTACTTGAGGCTATTTCTGGATGGAGTCCCAGATAAAAACAATGAGATATACCTAAAGTTTTAATCTAAGAACATGCACCAACCATCTGTACCTTGTCCCACCCCTGAATGGCACTAAAGGCTTTTCAGATGTGAAAATTTTTCTAGTTTTTTGTTCAAGGTCAAATTGCTGAGGGTCGGTTGTATCCGGATGTCTGAAATTTTAGAATGCAGAGCAAATGCCGACATCACAAATTTTGGAGTAGGGTATGAGTCGTTTTTCCCATAGTTGAGAAAGGTATATTAATGCACTCACTGAACTCTGTTGAATGACCAAGCCTTTCGCTTGGGCAGCCAAGCAGGTTTAGGTTGTAACTGTGTAACTTTAATCAGAATTGGGTCCAACAAAATGGGGCGGCAAAAAAAATACAGGTAATTAGGAGAAAATGTGTTTGTTTATTTTTTTAGAGTTAGACTCCATAAATGTTCCTGTACATGTGTAATGCATACTTGTATGTCAAAGTCTGCTACATTTAACATGCAATTTATGATCTTTGCTGACAT

Ace file of the UniGene sp_v1.1_unigene1562

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Myc2 bHLH protein n=2 Tax=Vitis vinifera RepID=A6NAB4_VITVI	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	basic helix-loop-helix family protein	-	-	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	57%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLA6

Fln msg:

Fln protein: MGSDAVSASRFWNEEDKATVNSLLGPSAFEHLMVSYVSSEGLVSGINDCALQQKLQNLVESSSFNWTYAIFWQLSRSKTGEVVLGWGDGSFKGPREGQEADQARGFDHRFAETDQHLKKKVLQKLQSFFGGGGEEENNFVSGLDNVSDTEMFYLASMYYSFPRGIGVPGQALASGKCIWLNEPSKLPTNLCSRAYLAKTGGIQTLVCLPMEHGVVEVGSVEMIRESKHAIDKVRSSFNENACDGNRGQQAVKGSLVVPFPPNPMRVNAVNAKTAPPLKPSHDWKIFGQELSKSTEAVVTKVEDRDRHYQPVFRPPYAHAASYVTNEQRMPYSTVNQNGLQSPNWSHISNGEAGEIYNTRDLIKPSRISPLGVAGPSLNAVTARPSIMESEEHSDVEASERRPVVVEERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYIQELQSKVKDMETEREKQQQPQPQQAKSNIQDGRIVDPISDIDVQMTTGEATVRVSCAKESHPVGRVMLALQRLQLDVHHANISAANENILHTFVIKLGGTQTLTKDQLLEAISGWSPR*

Protein Length: 588

Fln nts: CGTCGTGACCTTGGCTGTCACTTGTTTTTAGTGTTTTTGAACGGTGGACACTATTTTTTTCCCCGGTTAAGGCACGATATTTTGTGAATTTATTGGCGTCGTGGTTTGAATCGGTCCGTAAGGTTGCATTGCCGGTCGCGGATGGATGATTTTGTGAAAATTGAGGAATCTTTGCGGCGGTCGGAAGGTTAAGATTCGTCGCCGTTGGAAGGGGACCTGGTTTAATGAAATGCGGAGGAGGTCGGGGCATTCTTGCTGATTTCTGAGGGCGTGTTTTTGTGTTAGGAGGTGTTGTGAGGTGTGCGAGCTTTTTTGTGGTCCGGTGTTAAAGATTCGGGTGAAGCTTTGTAAATTAGTGTGTTCGTTCTGATTTATTTGCTTGTTTTTCAATCTGATTGCTAAGGAGAAACGAAAATGTGTTCGATATGAAGAAAAGGGAAGGGTTCTGGTGGCAAATTTCGAGGTTTTGCTTAAATCTGGAGGTTGAATTTGACAGAGATTTTTATTAGTCATCCGCTTTTGTGCGCGGTGGTGAATGGGCTTAAAGCTGGAGAAGTTGTTAAATTTTGATAAACATTCGTGAGAATTGGTGGAATTTGGACCCTGCTTTGGTTTCTTTAATTGAGGAAAAAA_-_ATGGGGAGCGACGCAGTCTCTGCATCAAGGTTCTGGAATGAGGAAGATAAAGCCACGGTGAATTCGCTTTTAGGCCCTAGTGCTTTCGAGCACTTGATGGTGAGCTATGTTTCTTCCGAGGGGCTTGTTTCCGGGATCAATGATTGTGCATTACAACAGAAGTTACAAAACCTAGTGGAATCTTCGTCCTTTAACTGGACTTATGCCATCTTTTGGCAACTCTCCAGATCCAAAACTGGAGAAGTGGTTCTCGGATGGGGTGACGGTTCCTTCAAAGGGCCTCGGGAAGGTCAAGAAGCAGATCAAGCACGCGGTTTCGATCACAGATTCGCTGAAACAGACCAGCACCTGAAGAAAAAGGTATTACAAAAACTTCAAAGCTTCTTTGGGGGTGGGGGTGAAGAGGAAAATAATTTCGTGTCGGGATTAGATAATGTTTCTGATACGGAGATGTTTTATTTGGCATCCATGTACTACTCGTTCCCTCGGGGCATCGGCGTTCCTGGCCAAGCCCTCGCCAGCGGAAAATGTATCTGGCTGAATGAGCCAAGCAAATTGCCAACCAATCTTTGCTCTAGAGCATACCTGGCCAAAACAGGTGGCATTCAGACGCTTGTTTGTTTGCCAATGGAACATGGGGTTGTGGAAGTTGGGTCGGTCGAGATGATCAGGGAAAGTAAACATGCCATAGATAAAGTTAGATCTAGTTTCAATGAAAATGCCTGTGATGGAAATCGAGGTCAACAAGCAGTGAAGGGTTCTCTAGTTGTACCCTTCCCCCCAAATCCAATGAGGGTGAATGCTGTGAATGCCAAGACTGCTCCACCTCTAAAGCCTTCCCATGATTGGAAAATATTTGGCCAAGAACTCAGCAAATCTACCGAAGCTGTTGTCACCAAAGTGGAAGACAGAGATCGTCATTATCAGCCCGTTTTCCGTCCACCTTACGCCCATGCTGCTTCCTATGTAACAAACGAACAGAGAATGCCTTATTCAACTGTCAATCAGAATGGGTTGCAATCACCGAACTGGAGCCATATCAGTAATGGTGAGGCTGGGGAGATTTATAATACGCGTGATCTGATAAAACCTAGCAGAATTTCGCCACTTGGTGTTGCCGGCCCTTCGCTTAATGCAGTAACTGCTCGACCGTCCATTATGGAATCTGAGGAACACTCGGATGTGGAAGCCTCGGAGCGTAGGCCCGTGGTGGTTGAAGAGCGTAGACCAAGGAAAAGGGGAAGGAAACCAGCCAATGGAAGAGAAGAGCCCCTCAATCACGTGGAAGCAGAACGCCAAAGACGTGAGAAGCTTAACCAACGATTTTATGCATTGCGAGCAGTGGTGCCAAACATCTCAAAGATGGACAAAGCTTCATTATTAGGGGACGCAATTTCCTACATTCAAGAACTCCAGAGTAAAGTCAAGGATATGGAAACCGAAAGAGAGAAACAGCAGCAGCCACAGCCGCAGCAGGCTAAGTCCAACATACAGGATGGCAGAATCGTTGATCCTATTTCTGATATTGATGTTCAAATGACGACTGGGGAGGCCACTGTCAGAGTAAGCTGTGCAAAGGAAAGCCATCCCGTTGGTAGAGTAATGCTTGCATTGCAAAGACTACAATTAGATGTTCATCATGCAAATATATCTGCTGCAAATGAAAATATCCTCCATACATTTGTGATTAAGCTGGGCGGAACCCAGACATTAACTAAGGACCAATTACTTGAGGCTATTTCTGGATGGAGTCCCAGATAA___AAACAATGAGATATACCTAAAGTTTTAATCTAAGAACATGCACCAACCATCTGTACCTTGTCCCACCCCTGAATGGCACTAAAGGCTTTTCAGATGTGAAAATTTTTCTAGTTTTTTGTTCAAGGTCAAATTGCTGAGGGTCGGTTGTATCCGGATGTCTGAAATTTTAGAATGCAGAGCAAATGCCGACATCACAAATTTTGGAGTAGGGTATGAGTCGTTTTTCCCATAGTTGAGAAAGGTATATTAATGCACTCACTGAACTCTGTTGAATGACCAAGCCTTTCGCTTGGGCAGCCAAGCAGGTTTAGGTTGTAACTGTGTAACTTTAATCAGAATTGGGTCCAACAAAATGGGGCGGCAAAAAAAATACAGGTAATTAGGAGAAAATGTGTTTGTTTATTTTTTTAGAGTTAGACTCCATAAATGTTCCTGTACATGTGTAATGCATACTTGTATGTCAAAGTCTGCTACATTTAACATGCAATTTATGATCTTTGCTGACAT

Fln Alignment:

sp_v1.1_unigene1562___MGSDAVSASRFWNEEDKATVNSLLGPSAFEHLMVSYVSSEGLVSGINDCALQQKLQNLVESSSFNWTYAIFWQLSRSKTGEVVLGWGDGSFKGPREGQEADQARGFDHRFAETDXXXXXXXXXXXXSXXXXXXXXXXXXVSGLDNVSDTEMFYLASMYYSFPRGIGVPGQALASGKCIWLNEPSKLPTNLCSRAYLAKTGGIQTLVCLPMEHGVVEVGSVEMIRESKHAIDKVRSSFNENACDGNRGQQAVKGSLVVPFPPNPMRVNAVNAKTAPPLKPSHDWKIFGQELSKSTEAVVTKVEDRDRHYQPVFRPPYAHAASYVTNEQRMPYSTVNQNGLQSPNWSHISNGEAGEIYNTRDLIK-PSRISPLGVAGPSLNAVTARPSIMESEEHSDVEASXXXXXXXXXXXXXXXXXXXANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYIQELQSKVKDMETEREKXXXXXXXXAKSNIQDGRIVDPISDIDVQMTTGEATVRVSCAKESHPVGRVMLALQRLQLDVHHANISAANENILHTFVIKLGGTQTLTKDQLLEAISGWSPR*KQ
B8LLA6______________MGSEAAAASRFWNEEDKATVNSLLGPSAFEHLMMSYLSSEGLVSGINDCALQQKLQNLVESSSFNWTYAIFWQLSRSKNGDVVLGWGDGSFKGPREGQEADQARGFDQRFAETDQQLKKKVLQKLQSFFGGGGEEDNNFVSGLDNVSDTEMFYLASMYYSFPRGIGVPGQALASGKNIWLNEPSKLPTNMCSRAYLAKTGGIQTLVCLPMEHGVVEVGSVEMIRESKHAIDKIRSSFNENACDGNRGQPTVKGSLVAPFSPNPIRVNAVNAKAAPPLKPSHDWKIFGQELSKSSESVVTKVEERDRHYHPVFRPPYSHAAPYVTNEQRISYTNANQNGLQSPNWSHISNGEGGEIYNTRDLIKQSSRISPISVAGPSLSAVTARPPLMESEEHSDVEASERRPVVVEERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYIQELQNKVKDMETEKEKQQQPQLQQAKSNIQDGRIVDPISDIDVQMMSGEATVRVSCPKESHPVGRVMLALQRLQLDVHHANISAANENILHTFVIKLGGAQVLTKDQLLEAISGWSPRQKQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
241		11	88		0.923564
246			88	11	0.923564
248	11		88		0.923564
250	88	11			0.923564
255			11	88	0.923564
262		11		88	0.923564
263	11			88	0.923564
266		11	88		0.923564
279		11		88	0.923564
284			11	88	0.923564
286		11	88		0.923564
287			88	11	0.923564
288	88			11	0.923564
294	11			88	0.923564
295		11	88		0.923564
297		12	87		0.992554
330	87		12		0.992554
2497	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain