SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1417

Length: 2243 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1417
CGTCGTGACCTTGGCTGTCACTCAAGATTTTGATTGGTGTGAATTTATTCCTCGAATGAAGCAGAAAACTCCTGAGGAGATTACTGAGTATGGCATTCTCTTTCTAACTCATATATCCGAGGATATAACTGATTCACCGACATTTTCTGATGGTGTACCTAAAGAAGGTCTACGGATACAAGATGTTCTTGTTCGCCTTGCATTTTTGCAGCTGATAAAAGACAAGGTGAAGTTATTAGCAGAAAATCCTGCTATACCATTGTTTGCCATTGATATCTACAATAAATTTCCTGGACTAAAGAACTCCAGAATTTGGAAGGAGGAACATGATTCCAAGCTGCTACAAGCTATTCTGAAGCATGGTTATGGGAGATGGCATGCTATTGTAGAGGACAATGATCTTGGGTTTCAACATGTCATCCGAAAGGAGTTGCAGCTACCACCCTTAAATATATCTACCGTGGGAGATCCATTATATAAAAATGCTGGAGTCTCTTCTGCTATAGAAAACAAGGGTTCCCATATACAGGAAGATGGCTGTAGCAGCATGGTAGAAGGTCAAGCGAGGTTACCTTCTGTAGAACGTGCTTGTGATGTTGCAGGTGTTGGTGAAGTGGTAGCAACATTGGCAACTGAGAAGAGAAGCCAGCTGCCTCAAGCTGGATCTTCAGAGAATCTTCTTGCCCAATTAAGAGATGTACAAAAGAGGCTCCTTGAGTTTATTAGAAAGAGGGTATCACATCTAGAAAAAGCACTGAATGCTGAATACCATAAGGAGTCAATAATTGCAGAGCAGAAGGAATTTGAGTCTATCAATGAAGAACCTGAGCAAGAGGCTAGAGATGCACATGTACCAAGCCCTGCAAATCAACCACTGGCAGAAATTGGTAGCGCTGCCTTTTCTGCTCTATCAGCTCTAGATCCAGAAGAGGTGTCAACACATGCTTTTGATAATGATTCAAATCGCCTGGAATTAGCTAGACTTTACAACGAGATGTGTAAGGTGATTAATGAAAATGAGCAAGAATCATTTCAAACATATACAGGAAATAAGTCAGCTGGGCTTCGTTTGAGGAGAAATCTTCGCCCCCTTGACAGCTTGTGTGAAGGAGTTTGGAAAATTCTCAAAGTCCAGCAGGTTTCTGCAGATTTCAGTGCGGGCTTGAATCAATCATCCATGCAGAGTGAGGATCATATCAATGGTGAAGATCACATCAATGGTGAAGATGCTGATGTTCAATCAGATAGTCATGAGGATGACTTGGGTGCAGGTGACGAGGTCAATTCTGACAGCAAACAACACTTGGCTAATTCCAAAGCATCACCAAAGAAATCTGGGAATTCAGGTGTTGGTATATTCTCTTCAATGACAGCGACTGCATCAACTCCAAGGAGGGGCTTTCAAAGTGCACAGGAAGCGTGCTGTAATACAAACTCTGCAGATTTATTGACATCATATCCAAAAGGTGGAGCAAACATTGAGGTAATGGAAGGGAAAGAAGATAGAAGTGGATGCTTGCTGACGACTCCAAGAGTCATTGTCCTGGATGATTAAGCACTGGGAATACTGGATAATTAAATCAATGAATCCTCTTATAGATATGGCGCAGAAAAGTTCACCTTGCTGCCTAACATTCCTAAAGTCCTGTCCTGTGCTTGTAATTTCTTTCATTGGAAAATTTTGAATCACTGTCAACATAAAACTTGATCTCAGTTCATCCAGGAGCAAGATTAATCATTTTTTGTTCCTGTATAATATTATATTATTTGTCATGGAGATGGGCAATGCTTCAGACTTCAGATCCTATCAACTTTCAGGCATTATTCATTGTGAGTGCCTGGTGAGAGTCGAAAGTTAAAGCACAGGAAAGCAAACTTCTTGTTATGTACTCGTGGGTGTGGACGACAATCATTGTTTCGAAGAATCATGTTTACATGCTGAATGCATTTAATTGTTCTAGAACACCAACGATGCTGAAACATATGAGTGTTTTACCTCTTGTATATATTTCTAGGCCTCGTGCAATCTAATCAGAGGAGCCAATTATGTGATTGATTCAAATTTCACTAGTACATTACCATTTTGGCAGTCTTTCATGATTGTCAGACTGGCAACATATTCTTGTTCTATCGTTACAGACGAGATTAAATCCTTGATTGGGGATTTAATCTCGTCTGTAACTATTTGAAAAATTTGCGGAACGCTTGTGAAATAAAACAGGTAAGATCTTTGAAAATCCAAG

Ace file of the UniGene sp_v1.1_unigene1417

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chromodomain helicase DNA binding protein, putative (EC:2.7.11.1); K11643 chromodomain-helicase-DNA-binding protein 4 [EC:3.6.1.-]	-	-	41%
FL-Next	sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress).	-	-	36%
Blast2go	chromatin remodeling complex subunit	-	-	53%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	41%

Source	KEGGs	Term	Identity
AutoFact	Purine metabolism	00230	41%
AutoFact	Lipopolysaccharide biosynthesis	00540	41%
AutoFact	Folate biosynthesis	00790	41%
AutoFact	Metabolic pathways	01100	41%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of cellular process	GO:0048523	Biological Process	53%
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	53%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	53%
Blast2go	binding	GO:0005488	Molecular Function	53%
Blast2go	intracellular organelle	GO:0043229	Cellular Component	53%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF1086	IPR009462	-	0.0	53%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9S775

Fln msg: your sequence is shorter than subject: 518 - 1384

Fln protein: VVTLAVTQDFDWCEFIPRMKQKTPEEITEYGILFLTHISEDITDSPTFSDGVPKEGLRIQDVLVRLAFLQLIKDKVKLLAENPAIPLFAIDIYNKFPGLKNSRIWKEEHDSKLLQAILKHGYGRWHAIVEDNDLGFQHVIRKELQLPPLNISTVGDPLYKNAGVSSAIENKGSHIQEDGCSSMVEGQARLPSVERACDVAGVGEVVATLATEKRSQLPQAGSSENLLAQLRDVQKRLLEFIRKRVSHLEKALNAEYHKESIIAEQKEFESINEEPEQEARDAHVPSPANQPLAEIGSAAFSALSALDPEEVSTHAFDNDSNRLELARLYNEMCKVINENEQESFQTYTGNKSAGLRLRRNLRPLDSLCEGVWKILKVQQVSADFSAGLNQSSMQSEDHINGEDHINGEDADVQSDSHEDDLGAGDEVNSDSKQHLANSKASPKKSGNSGVGIFSSMTATASTPRRGFQSAQEACCNTNSADLLTSYPKGGANIEVMEGKEDRSGCLLTTPRVIVLDD*

Protein Length: 519

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTTGATTGGTGTGAATTTATTCCTCGAATGAAGCAGAAAACTCCTGAGGAGATTACTGAGTATGGCATTCTCTTTCTAACTCATATATCCGAGGATATAACTGATTCACCGACATTTTCTGATGGTGTACCTAAAGAAGGTCTACGGATACAAGATGTTCTTGTTCGCCTTGCATTTTTGCAGCTGATAAAAGACAAGGTGAAGTTATTAGCAGAAAATCCTGCTATACCATTGTTTGCCATTGATATCTACAATAAATTTCCTGGACTAAAGAACTCCAGAATTTGGAAGGAGGAACATGATTCCAAGCTGCTACAAGCTATTCTGAAGCATGGTTATGGGAGATGGCATGCTATTGTAGAGGACAATGATCTTGGGTTTCAACATGTCATCCGAAAGGAGTTGCAGCTACCACCCTTAAATATATCTACCGTGGGAGATCCATTATATAAAAATGCTGGAGTCTCTTCTGCTATAGAAAACAAGGGTTCCCATATACAGGAAGATGGCTGTAGCAGCATGGTAGAAGGTCAAGCGAGGTTACCTTCTGTAGAACGTGCTTGTGATGTTGCAGGTGTTGGTGAAGTGGTAGCAACATTGGCAACTGAGAAGAGAAGCCAGCTGCCTCAAGCTGGATCTTCAGAGAATCTTCTTGCCCAATTAAGAGATGTACAAAAGAGGCTCCTTGAGTTTATTAGAAAGAGGGTATCACATCTAGAAAAAGCACTGAATGCTGAATACCATAAGGAGTCAATAATTGCAGAGCAGAAGGAATTTGAGTCTATCAATGAAGAACCTGAGCAAGAGGCTAGAGATGCACATGTACCAAGCCCTGCAAATCAACCACTGGCAGAAATTGGTAGCGCTGCCTTTTCTGCTCTATCAGCTCTAGATCCAGAAGAGGTGTCAACACATGCTTTTGATAATGATTCAAATCGCCTGGAATTAGCTAGACTTTACAACGAGATGTGTAAGGTGATTAATGAAAATGAGCAAGAATCATTTCAAACATATACAGGAAATAAGTCAGCTGGGCTTCGTTTGAGGAGAAATCTTCGCCCCCTTGACAGCTTGTGTGAAGGAGTTTGGAAAATTCTCAAAGTCCAGCAGGTTTCTGCAGATTTCAGTGCGGGCTTGAATCAATCATCCATGCAGAGTGAGGATCATATCAATGGTGAAGATCACATCAATGGTGAAGATGCTGATGTTCAATCAGATAGTCATGAGGATGACTTGGGTGCAGGTGACGAGGTCAATTCTGACAGCAAACAACACTTGGCTAATTCCAAAGCATCACCAAAGAAATCTGGGAATTCAGGTGTTGGTATATTCTCTTCAATGACAGCGACTGCATCAACTCCAAGGAGGGGCTTTCAAAGTGCACAGGAAGCGTGCTGTAATACAAACTCTGCAGATTTATTGACATCATATCCAAAAGGTGGAGCAAACATTGAGGTAATGGAAGGGAAAGAAGATAGAAGTGGATGCTTGCTGACGACTCCAAGAGTCATTGTCCTGGATGATTAA___GCACTGGGAATACTGGATAATTAAATCAATGAATCCTCTTATAGATATGGCGCAGAAAAGTTCACCTTGCTGCCTAACATTCCTAAAGTCCTGTCCTGTGCTTGTAATTTCTTTCATTGGAAAATTTTGAATCACTGTCAACATAAAACTTGATCTCAGTTCATCCAGGAGCAAGATTAATCATTTTTTGTTCCTGTATAATATTATATTATTTGTCATGGAGATGGGCAATGCTTCAGACTTCAGATCCTATCAACTTTCAGGCATTATTCATTGTGAGTGCCTGGTGAGAGTCGAAAGTTAAAGCACAGGAAAGCAAACTTCTTGTTATGTACTCGTGGGTGTGGACGACAATCATTGTTTCGAAGAATCATGTTTACATGCTGAATGCATTTAATTGTTCTAGAACACCAACGATGCTGAAACATATGAGTGTTTTACCTCTTGTATATATTTCTAGGCCTCGTGCAATCTAATCAGAGGAGCCAATTATGTGATTGATTCAAATTTCACTAGTACATTACCATTTTGGCAGTCTTTCATGATTGTCAGACTGGCAACATATTCTTGTTCTATCGTTACAGACGAGATTAAATCCTTGATTGGGGATTTAATCTCGTCTGTAACTATTTGAAAAATTTGCGGAACGCTTGTGAAATAAAACAGGTAAGATCTTTGAAAATCCAAG

Fln Alignment:

sp_v1.1_unigene1417___DFDWCEFIPRMKQKTPEEITEYGILFLTHISEDITD-SPTFSDGVPKEGLRIQDVLVRLAFLQLIKDKVKLLAENPAIPLFAIDIYNKFPGLKNSRIWKEEHDSKLLQAILKHGYGRWHAIVEDNDLGFQHVIRKELQLPPLNISTVGDPLYKNAGVSSAIENKGSHIQEDGCSSMVEGQARLPSVERACDVAGVGEVVATLATEKRSQLPQAGSSENLLAQLRDVQKRLLEFIRKRVSHLEKALNAEYHKESIIAEQKEFESINEEPEQEARDAHVPSPANQPLAEIGSAAFSALSALDP---EEVSTHAFDNDSNRLELARLYNEMCKVINENEQESFQTYTGNKSAGLRLRRNLRPLDSLCEGVWKILKV---QQVSADFSAGLNQSSMQSEDHINGEDHINGEDADVQSDSHEDDLGAGDEVNSDSKQHLANSKASPK
Q9S775______________NFDWKEFVPRLKQKTFEEINEYGILFLKHIAEEIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRILERFPGLRSGKIWKEEHDKIMIRAVLKHGYGRWQAIVDDKELGIQELICKELNFPHISL--------------SAAEQAGLQGQNGSGGSNPGAQTN----------QNPGSVIT-----GNNNASADGAQVNSMFYYRDMQRRLVEFVKKRVLLLEKAMNYEY-AEEYYGLGGSSSIPTEEPEAEPK---IADTVGVSFIEVDDEMLDGLPKTDPITSEEIMGAAVDNNQARVEIAQHYNQMCKLLDENARESVQAYVNNQPPSTKVNESFRALKSINGNINTILSITSDQSKSHEDDTKPDLNNVEMKDTAEETKPLRGGVVDLNVVEGEENI-AEASGSVDVKMEEAKEEEKPK

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
365	25			75	0.996473
367	75		25		0.996473
368			25	75	0.996473
461		90		10	0.90298
1078	85		14		0.993533
1174		12		87	0.992554
1382		88	11		0.923564
1402		14		85	0.993533
1503	85		14		0.993533
1561		66		33	1.0
1589	66	33			1.0
1614	80	20			0.999996
1615	80			20	0.999996
1616	80	20			0.999996
1617	20		80		0.999996
1737	88		11		0.923564
1777	20		80		0.999996
2140	9	90			0.999842
2169		33		66	1.0
2171	66			33	1.0
2174		68		31	1.0
2176		68	31		1.0
2177	31		68		1.0
2178	31			68	1.0
2179	31	68			1.0
2184	68			31	1.0
2185		68		31	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain