SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1338

Length: 1493 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene1338 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM33_MARPO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cuticle development	GO:0042335	Biological Process	78%
Blast2go	protoderm histogenesis	GO:0010068	Biological Process	78%
Blast2go	organ formation	GO:0048645	Biological Process	78%
Blast2go	shoot development	GO:0048367	Biological Process	78%
Blast2go	kinase activity	GO:0016301	Molecular Function	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKU4

Fln msg: your sequence is shorter than subject: 322 - 366

Fln protein: ETAPLDWDARIKIALGAARGLAYLHEDSSPRVIHRDFKASNILLEDDFTPKVSDFGLAKSASEEVSGHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVTWARPLLTSKEGLEALVDPALGNSLPFDNIARVAAIASMCVQPEVSHRPFMGEVVQALKLVYNDSDASNGGGSGSFSHGGESNAHDIEVKDDSSQQWPQSIQYVPDGSSFVTIDYDSGPLQTQGLETERPLSASALLSTSGSSLRQLSGSFRRHSSSGPLRTNKSKKSWYGIRGLAGGSISEHGVQRHEDVHELWP*

Protein Length: 323

Fln nts: AAGAAACAGCTCCGCTTGACTGGGATGCCCGTATAAAAATTGCACTTGGTGCAGCTAGAGGGCTTGCATATCTCCATGAGGATTCCAGTCCTCGTGTTATACATCGTGATTTTAAGGCAAGCAATATTTTGCTGGAGGACGATTTTACCCCTAAAGTTTCTGATTTTGGATTGGCGAAATCGGCCTCTGAGGAAGTGAGTGGACACATCTCAACAAGAGTGATGGGCACATTTGGGTATGTGGCTCCTGAATACGCAATGACTGGGCATTTGCTTGTGAAGAGTGATGTGTATAGTTATGGTGTAGTGTTACTGGAATTGCTTACTGGAAGGAAACCAGTTGACATGTCACAACCACCCGGGCAGGAAAACCTGGTTACATGGGCTCGGCCTCTGCTTACAAGCAAAGAGGGGTTGGAAGCCTTGGTGGACCCTGCATTGGGTAACAGTCTCCCCTTCGACAACATTGCAAGAGTTGCAGCTATTGCTTCCATGTGTGTTCAGCCTGAAGTTTCACATCGGCCATTTATGGGCGAGGTTGTACAAGCTTTGAAGCTTGTTTATAATGATTCAGATGCAAGCAATGGAGGTGGATCCGGTAGTTTTAGTCACGGAGGGGAGTCTAATGCTCATGATATAGAGGTCAAGGATGACTCTAGTCAGCAGTGGCCCCAAAGTATTCAGTATGTACCTGATGGTAGTTCCTTTGTCACAATTGATTATGATTCAGGTCCCCTCCAAACACAGGGACTGGAGACAGAAAGACCACTTTCAGCATCCGCTTTGCTGTCTACTTCTGGAAGCTCGTTGAGGCAATTATCAGGATCTTTTAGGAGGCACAGCAGTTCTGGTCCCCTGAGAACAAATAAAAGTAAAAAATCCTGGTATGGAATCAGGGGTCTGGCAGGGGGTAGCATAAGTGAGCATGGAGTCCAAAGGCACGAAGATGTACATGAGCTTTGGCCATAA___TGCTTGTTTACATTTCTGTCACTTGGTTAAGACATGTATGGCATCCTGGTTATTAATAAAAGATATACAGAAGAAAGTGAGTTTTGTCTCCAGGTAGAAGCTTTTTAAGCCATCAGATACCTTAGCCAAAAAGTACTTTCCATGTGCTGTTAATCTGCCCATTGTATGACGTTATGTTCATATGCGGATTAGGATCTTTACTATTGATGGGTTATTATAATGAACGCTAGTTGCCAGTTAAAGTGAAGTATCGAGTTTGATGGACTTTACAGATCTGTTTACCCAAATTCTTGAGCAGCATAATTTTTTGAGGGAAAGGAAAATATTCTCACACAGTATTTTTTCGACATTCTACAAGAAGGAAAGTTGGCCTGCTGAAGATATCGACATTTGAACATTAAGTTGCTTAAATGAGTATGGTTGATTTCTCATTCCCAGATCCATAGACCATAATTGTGGTTTATAAGGTTGTCTCAGAAACTATTGAGAAAGCGCTGCATGCAGCCAACAGATTCTAAGCATTTG

Fln Alignment:

sp_v1.1_unigene1338___LDWDARIKIALGAARGLAYLHEDSSPRVIHRDFKASNILLEDDFTPKVSDFGLAKSASEEVSGHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVTWARPLLTSKEGLEALVDPALGNSLPFDNIARVAAIASMCVQPEVSHRPFMGEVVQALK
B8LKU4______________LDWMQRVKIAVGAAKGLEYLHEKAQPHIIHRDIRSSNVLLFDDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRL-SEDKVKQCVDPKLKGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQ

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
140		60		40	1.0
244	12		87		0.992554
247	87		12		0.992554
253	88	11			0.923564
254		11		88	0.923564
255	11	88			0.923564
256	11			88	0.923564
259	88	11			0.923564
261	88	11			0.923564
263	11			88	0.923564
265		88	11		0.923564
334		87		12	0.992554
335		87	12		0.992554
338	87		12		0.992554
340		87	12		0.992554
344	87	12			0.992554
345	12			87	0.992554
347			12	87	0.992554
349	87			12	0.992554
353		12		87	0.992554
354	87		12		0.992554
524			71	28	1.0
525		71	28		1.0
527			28	71	1.0
531		28		71	1.0
532	28		71		1.0
538	71		28		1.0
544		25		75	1.0
549	75		25		1.0
1024		25		75	0.996473
1026		25		75	0.996473
1442		16		83	0.994512
1443	83	16			0.994512
1444		16	83		0.994512
1445	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain