SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1253

Length: 2299 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene1253
CTTTTCTTCAGAGGGAATTAGTATATTTGGGTTTTGTGATTGCAAAAAATGAGCTAAAGATTGACCCAGAGAAGATTACAGCAATCATTAGCTGGCCATCCCCAAAAAGTTTGTTTGAGGTACGCAGTTTTTATGGGTTGGCAAGTGAGATCTACGCACCTATGTTGGATACTATAAAAAAGGCAAGTCAGCCTTTCTGTTGGACTAAAGTAGCAGAGAAAAGTTTTCAACTACTAAAGAAGAAGATTATTGAAAGACCAATCCTGAGATTGCCAGATTTTAACAAGATTTTTCAGGTTCGTTGTGATGCCAGTGTATAGCCATTGGGGCCATACTCAGCTAGGAAGACAAACCCGTTTCCTATTTCAGCGAAAAACTGAACGAAAGCAGGCAGAAGTACTCATCTTACGACAAGGAGTTCTATGTTGTCGTCCAAGCATTGAAGCATTGGAGGCACTATTTTCTAGGGAATGAATTTGTTTTGTTTTCCGATAATTTTGCATTGCAGTACGTTATGCAACAGCATAAGCTGAACCACAAGCATGCAAAATGGGTTGAGTACTTGCAGAGTTTCACGTTTGTCTTGAAGCATATCAGTGGACAGGCCAACAAGGTTGTAGATGCATTGAGCAGAAGAGATTTTCTCTTACAAGAAAGTACGATACAAGTATTGGGTTTTGAGCACCTGACAGACTTGTATTAGACAAATGCAGATTTCAAGGAGGCTTATGAAGCCTACCAAAATCCTTTGTTGAGTAACAATAGTCCGTGGCTGGACTATAAATTACAAGAGAAGTTGTTGTTTAAAGGGGGACAATTATGCATTCCTGACTGTTTTATGAGGGAGAACATCATCAAGGAGAAGCACAACGGAGGTCTAGCCGAACATTTCGGCATTGATAAGACCTCAGACCAGCTTAGCCATTTTTATTACTGGCCAAGGATGCGAAGGGATGTGCAGCGATTTGTAACTAGATGTAAAGTGTGTCAGTTGACGAAAGGACACAGTTAGAATACGAGACTATACACACCACTGCCTATTCCGAGTAAACCATGGGACTTAGTCAGCTTGGACTTTGTCCGCAGCGGAGTTACGATTCTGTGATGGTGGTAGTGGACGGTTCTCAAAAATGGCACATTTCATCCCTTGTAAAAAAATCAGCGATGCCACTCACATGGCCCACTTGTTTTTCACGGAGATAGTCAGGCTACACGGTCTGCTTAAGTCTATAGTTTCCGACAAGGACGTGAAATTTACAGGACACTTTTGGCGCACCTTGTGGAAGAAGATGGACACACAGTTAAGTGTTGTCTCCGCTTATCACCCACAGACCAACGGACAAACAGAGGTGGTAAACAGGAGCCTGGGAAACCTGATACGAAGCTTGATCAGAGAAAATTCACGAATGTGGGATCGTGTACTTGCCCAGGCGGAGTTTGCTTACAACGACTCACCAAATCACAGCACGGGATACAGTCCTTTTTAGATCTTATATGGCATGCATCCTCACGGAGTGCATGAGTTATGAGATCAAGGACAGCAAGAAAAACGTAGTGCTGATGGGGAAGATTCTGCCAAAGCAATGAATGACCTACACGAGCAGGTAAAGACGAAGTTGCAGGACAGCAGTCAGAAGTATAAGCAGCGAGCAGATATGAAGCAGTGAGAAGTACAATTTAATGTGGGGGATGAAGTCCTCGCACATTTATGCAGAGAACGGTTTGCTAGGGGTGAATACAAAAAACTGAAATACAAAAAGATTGGCCCGTGTAAAATTCTGCGTAAATTTTCAGCCAATGTTTATGAATTACAACTACCTCCACGGATAGGCATATCGACCATCTTCAACGTGGCAGATTTGTTTCCATATATTATATTGCCAGTCCTGAAAACGATAGTACAACACGACCTACATGAGACACGTAGGAGGAAAGAAACACTTGGATGAGGCAAATGCCTTCAGCTTAGCCCCTTGAGATCGAGAGGATCCTCGACACTCAAGTGGCCAAGCGAACTTGTCGGAAGGAATACCTACAATATCTTCTCAAGTGGAAGAACCCTCCCATTGAGGATAATTCCTGACTTGACGTCGGACAAATACAGCAGGCAAGTTATTCAGTCGAGGAGCTCGTGCACCGGAGCCATGAATTTTTTTCTTACCCCAGGAGCTTGATGCAGGAGCATCCAAATGAGGGTATCATGGCTGGGGTGTTTGGTCTCAGCTAGGAAGAATAGTTTCACACTCATCGTTTAGTTTCATTTCCATTTGTTAGTTAAAGTAGTGTTTAAGGGCTTGCA

Ace file of the UniGene sp_v1.1_unigene1253

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rve domain containing protein	-	-	6.0e-11	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	gag-pol polyprotein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	0.0	62%
Blast2go	Ribonuclease H-like domain	IPR012337	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABB2

Fln msg:

Fln protein: MRENIIKEKHNGGLAEHFGIDKTSDQLSHFYYWPRMRRDVQRFVTRCKVCQLTKGHS*NTRLYTPLPIPSKPWDLVSLDFVRSGVTIL*

Protein Length: 90

Fln nts: CTTTTCTTCAGAGGGAATTAGTATATTTGGGTTTTGTGATTGCAAAAAATGAGCTAAAGATTGACCCAGAGAAGATTACAGCAATCATTAGCTGGCCATCCCCAAAAAGTTTGTTTGAGGTACGCAGTTTTTATGGGTTGGCAAGTGAGATCTACGCACCTATGTTGGATACTATAAAAAAGGCAAGTCAGCCTTTCTGTTGGACTAAAGTAGCAGAGAAAAGTTTTCAACTACTAAAGAAGAAGATTATTGAAAGACCAATCCTGAGATTGCCAGATTTTAACAAGATTTTTCAGGTTCGTTGTGATGCCAGTGTATAGCCATTGGGGCCATACTCAGCTAGGAAGACAAACCCGTTTCCTATTTCAGCGAAAAACTGAACGAAAGCAGGCAGAAGTACTCATCTTACGACAAGGAGTTCTATGTTGTCGTCCAAGCATTGAAGCATTGGAGGCACTATTTTCTAGGGAATGAATTTGTTTTGTTTTCCGATAATTTTGCATTGCAGTACGTTATGCAACAGCATAAGCTGAACCACAAGCATGCAAAATGGGTTGAGTACTTGCAGAGTTTCACGTTTGTCTTGAAGCATATCAGTGGACAGGCCAACAAGGTTGTAGATGCATTGAGCAGAAGAGATTTTCTCTTACAAGAAAGTACGATACAAGTATTGGGTTTTGAGCACCTGACAGACTTGTATTAGACAAATGCAGATTTCAAGGAGGCTTATGAAGCCTACCAAAATCCTTTGTTGAGTAACAATAGTCCGTGGCTGGACTATAAATTACAAGAGAAGTTGTTGTTTAAAGGGGGACAATTATGCATTCCTGACTGTTTT_-_ATGAGGGAGAACATCATCAAGGAGAAGCACAACGGAGGTCTAGCCGAACATTTCGGCATTGATAAGACCTCAGACCAGCTTAGCCATTTTTATTACTGGCCAAGGATGCGAAGGGATGTGCAGCGATTTGTAACTAGATGTAAAGTGTGTCAGTTGACGAAAGGACACAGTTAGAATACGAGACTATACACACCACTGCCTATTCCGAGTAAACCATGGGACTTAGTCAGCTTGGACTTTGTCCGCAGCGGAGTTACGATTCTGTGA___TGGTGGTAGTGGACGGTTCTCAAAAATGGCACATTTCATCCCTTGTAAAAAAATCAGCGATGCCACTCACATGGCCCACTTGTTTTTCACGGAGATAGTCAGGCTACACGGTCTGCTTAAGTCTATAGTTTCCGACAAGGACGTGAAATTTACAGGACACTTTTGGCGCACCTTGTGGAAGAAGATGGACACACAGTTAAGTGTTGTCTCCGCTTATCACCCACAGACCAACGGACAAACAGAGGTGGTAAACAGGAGCCTGGGAAACCTGATACGAAGCTTGATCAGAGAAAATTCACGAATGTGGGATCGTGTACTTGCCCAGGCGGAGTTTGCTTACAACGACTCACCAAATCACAGCACGGGATACAGTCCTTTTTAGATCTTATATGGCATGCATCCTCACGGAGTGCATGAGTTATGAGATCAAGGACAGCAAGAAAAACGTAGTGCTGATGGGGAAGATTCTGCCAAAGCAATGAATGACCTACACGAGCAGGTAAAGACGAAGTTGCAGGACAGCAGTCAGAAGTATAAGCAGCGAGCAGATATGAAGCAGTGAGAAGTACAATTTAATGTGGGGGATGAAGTCCTCGCACATTTATGCAGAGAACGGTTTGCTAGGGGTGAATACAAAAAACTGAAATACAAAAAGATTGGCCCGTGTAAAATTCTGCGTAAATTTTCAGCCAATGTTTATGAATTACAACTACCTCCACGGATAGGCATATCGACCATCTTCAACGTGGCAGATTTGTTTCCATATATTATATTGCCAGTCCTGAAAACGATAGTACAACACGACCTACATGAGACACGTAGGAGGAAAGAAACACTTGGATGAGGCAAATGCCTTCAGCTTAGCCCCTTGAGATCGAGAGGATCCTCGACACTCAAGTGGCCAAGCGAACTTGTCGGAAGGAATACCTACAATATCTTCTCAAGTGGAAGAACCCTCCCATTGAGGATAATTCCTGACTTGACGTCGGACAAATACAGCAGGCAAGTTATTCAGTCGAGGAGCTCGTGCACCGGAGCCATGAATTTTTTTCTTACCCCAGGAGCTTGATGCAGGAGCATCCAAATGAGGGTATCATGGCTGGGGTGTTTGGTCTCAGCTAGGAAGAATAGTTTCACACTCATCGTTTAGTTTCATTTCCATTTGTTAGTTAAAGTAGTGTTTAAGGGCTTGCA

Fln Alignment:

sp_v1.1_unigene1253___LSHFYYWPRMRRDVQRFVTRCKVCQLTKGHS*NTRLYTPLPIPSKPWDLVSLDFV
D5ABB2______________LQKYFYWSKLRHDVSKYIRSCSACSIAKPAIKKQGLYTPLPTLDRPWESISMDYM

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1657		12		87	0.992554
1875	85		14		0.993533
1876		14		85	0.993533
1895		16	83		0.994512
1896	83	16			0.994512
1897		16		83	0.994512
1984		11	88		0.923564
1987		11	88		0.923564
1989	11			88	0.923564
1990		88	11		0.923564
1991		88	11		0.923564
1999			14	85	0.993533
2002	83		16		0.994512
2010	83			16	0.994512
2016	16	83			0.994512
2019			83	16	0.994512
2021		83		16	0.994512
2045		83	16		0.994512
2056	20		80		0.995493
2074		20		80	0.995493
2085		20		80	0.995493
2086		20		80	0.995493
2087		20	80		0.995493
2089		80		20	0.995493
2091		25		75	0.996473
2097	75		25		0.996473
2126	25		75		0.996473
2135		75	25		0.996473
2137		75		25	0.996473
2138		75		25	0.996473
2139	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain