SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene1190

Length: 823 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene1190

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CAND1; CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	84%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	84%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	HEAT	IPR000357	-	84%
Blast2go	Armadillo-like helical	IPR011989	-	84%
Blast2go	Armadillo-type fold	IPR016024	-	84%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
507		33		66	0.997452
764			42	42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain