SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene957

Length: 1331 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene957

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	61%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1T0

Fln msg: your sequence is shorter than subject: 315 - 347

Fln protein: KQLIKEFSQFGEVDSVRLRSVPILDSKLPRKNAILKGQIDDSHNRVHAYVVFKDKESANAALSHNLAELGGNHIRVDRAYPPCKKLKGENHFTYEYKRTVFVGNLPFDVQDEELYQLFLGTKLLESSVEAVRVIRDPHTSKGKGIAYVLFKTMNAAKLAIKKNHFKLRDRDLRLCKAQPDSHQGSRAVSTPGSSSDMNPRTNRSSGKRSAESAGLSDHSAKKPSRISLSYQGTKASKTDGHSVKMTGAASMYKEKKPHSIHYSDPKQWQFQRPAVESRKTRLSKSPGPNHAGKKRKQVQARTGYSKSPKKFRAD*

Protein Length: 316

Fln nts: GGAAACAACTGATAAAGGAATTTTCCCAGTTTGGAGAAGTGGATTCAGTGAGGTTGCGTTCTGTTCCAATTTTGGATAGTAAATTGCCAAGAAAGAATGCAATCCTCAAGGGGCAGATTGATGACTCTCATAATAGAGTCCATGCCTATGTTGTTTTTAAAGATAAAGAATCAGCAAATGCTGCTTTGTCACACAACCTGGCAGAGCTTGGTGGAAACCATATTCGTGTGGATAGGGCATATCCACCTTGCAAGAAACTTAAAGGCGAAAACCATTTTACTTATGAATATAAGCGGACTGTATTTGTTGGGAATCTTCCATTTGATGTGCAGGATGAAGAACTATATCAGCTATTCCTTGGAACTAAACTTTTGGAGTCGAGTGTTGAAGCTGTTCGGGTTATTAGAGATCCTCATACTAGCAAAGGAAAGGGCATTGCTTATGTTCTGTTTAAGACCATGAATGCTGCTAAACTGGCCATAAAGAAGAATCACTTTAAGCTAAGAGATCGGGATCTTAGATTATGTAAAGCACAACCTGACTCACATCAAGGGTCACGAGCTGTTTCAACTCCAGGGTCATCCTCTGATATGAACCCAAGAACTAATAGATCAAGTGGAAAACGTTCCGCTGAGTCAGCAGGACTGTCAGACCATTCAGCAAAAAAGCCGTCAAGAATATCTCTTTCTTATCAAGGTACTAAGGCTAGCAAAACAGATGGCCATTCAGTCAAGATGACAGGTGCAGCAAGCATGTACAAGGAGAAGAAACCTCATAGCATACATTACAGTGATCCCAAGCAATGGCAGTTTCAAAGGCCAGCAGTTGAATCTCGAAAGACAAGGTTATCTAAAAGCCCTGGACCAAACCATGCAGGCAAAAAGCGGAAACAAGTGCAGGCAAGGACAGGATATTCAAAGTCCCCCAAAAAGTTCAGGGCTGATTGA___TAGTACATCCAATCCATCATGTTGTGTATTTGTTGGATTTGGAACTCCCTGGAATTAAAGGAAATGAGGGAGCATTTTGGTCCTTGACCAACTGTTATCAGAGGCCAGCATATGTTTTTTTTCAAGCTGTCTAGGGTCAAGTGGACTTGGATTAGTGATAAGTATTTCATACTACACCGCCAAATTTATTTGTTATTTAACTGCCTTGTATGTTCACTATGTACTTAATTGTAAAAAAACAGCTTGATTGCATACCAGGAACCTGGAGAAGCTAACAATTGCATCATTTTTCTTATCCTATACCAGCAATGGTTAGCGAGTGTATAACAAATATTCTGTTTTGGATTCCTTCTTTTTATAGCCTGGTTAAGGCAGGTGTTTTAC

Fln Alignment:

sp_v1.1_unigene957___PPCKKLKGENHFTYEYKRTVFVGNLPFDVQDEELYQLFLGTKLLESSVEAVRVIRDPHTSKGKGIAYVLFKTMNAAKLAIKK-NHFKLRDRDLRL
A9P1T0_____________PEQESVEGQDYPPLPEGTKLYVGNLPFDIDSEGLAKMFDESGV----VEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRV

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
218		80		20	0.995493
360	25			75	0.996473
365	75		25		0.996473
546		20		80	0.995493
652		80		20	0.995493
666	60			40	1.0
693	16			83	0.994512
695	83		16		0.994512
696			16	83	0.994512
697		83	16		0.994512
708	16		83		0.994512
808	20			80	0.995493
961	75		25		0.996473
964		75	25		0.996473
965	75			25	0.996473
966	75		25		0.996473
967	25			75	0.996473
970	75			25	0.996473
972		75	25		0.996473
973	75	25			0.996473
977	25			75	0.996473
978		25	75		0.996473
980	25		75		0.996473
1046		75		25	0.996473
1094	87		12		0.992554
1106		12		87	0.992554
1191	71			28	1.0
1192	28			71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain