SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene885

Length: 2192 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene885
ATTGGGGAGGGCAAAGGAATTGATCGAAGAAACCAAAGCACCAGAGAAAACCAATTCCGGAGGAACACGCAGGTCATAATTAGAAACTACTACGAGCAGGTCATAGTTAGAGACTATTACGACATAAAAACGTGGAGGCTTTTCACTGCTGCTACCCATTTCAGAATAGTTTGAGATCGGAAAGTGTCGTGAGATATTGGGGTTGAATTCTTCGCGATTTCGGTCCGGAGGAGACTTGAATCCTTCGAGGTTTCAGCCATCTTTGAGCGAAAATGGTGTTAGCAGAGCTAGGCGGGAGCATCTCCCGCGCCCTACAGCAGATGAGCAATGCCACAATTATTGACGAGAAAGCATTGAACGACTGCTTGAATGAGATTTCGAGGGCGTTACTACAGTCTGACGTTCAATTTAAAATGGTCAGGGACATGCAGGTGAACATAAAAAAGATTGTCAATTTGGAAGATCTCGCCGCTGGTCACAACAAACGCAGGATCATTCAACAGGCCATTTTCAATGAATTGTGTAAAATGCTGGATCCTGGAAAACCCTCCTATACACCAAAGAAAGGAAAGCCGAGTGTTGTCATGTTTGTAGGATTACAGGGTGCTGGGAAGACTACTACTTGTACAAAGTATGCTCACTACTATCAAAAGAAAGGCTGGAAGCCAGCCTTGGTTTGTGCAGACACATTTAGAGCTGGTGCATTTGATCAGCTGAAACAGAATGCGACTAAGGCCAAGATTCCCTTTTATGGCAGCTACACAGAGACAGATCCTGTAAAAATTGCTGAGGATGGTGTAGAAAGGTTCAAAAAGGAAAATTATGATCTCATAATTGTGGATACTAGTGGGCGGCACAAACAAGAAGCTGCACTATTTGAGGAAATGCGCCAAGTGTCTGCAGCAACGAATCCAGACCTTGTGATATTTGTTATGGATAGTAGTATTGGACAAGCTGCATTTGATCAAGCCCAAGCATTCAAGCAGAGTGTTTCTGTAGGAGCTGTAATTATTACCAAGATGGATGGTCATGCAAAAGGTGGAGGTGCACTAAGTGCTGTTGCAGCAACAAAAAGTCCCATTATATTTATTGGTACAGGAGAGCATATGGATGAGTTTGAGGCTTTTGATGTGAAGCCATTTGTCAACAGACTTTTAGGCATGGGAGACTGGTCGGGTTTTATGGATAAAATTCATGAAGTTGTTCCTATGGATCAGCAACCAGAACTTTTACAGAAATTATCAGAAGGCAATTTCACATTGCGAATCATGTATGAGCAGTTCCAAAATATTCTTAAAATGGGACCCATTGGTCAGGTATTTTCGATGATTCCTGGATTTAGTGCTGAGTTAATGCCCAAGGGTCGTGAAAAGGAAAGTCAAGCACGCATTAAAAGGTTCATGACGACGATGGATTCCATGACCAATGAAGAACTTGATAGTTCAAATCCAAAGCTTATGACAGAGTCACGAATAATGCGTGTTGCACGTGGGTCTGGTCGTCCTGTTAGGGAAGTAATGGAAATGCTAGAAGAGTTTAAACGCTTAGCTAAGATTTGGAGTAAGATGAAGGGACTTAAAATCCCCAAGAAGGGTGACATGAGTGCATTATCTCGGAATATGAATGCTCAGCACATGAGCAAGGTTCTTCCTCCACAAATGCTGAAGCAGATTGGTGGTATGGGAGGGTTGCAGAACTTAATGAAGCAGATGGGTGGCAAAAACTTTGGAGGCATGTTTGGAGACAAGTAGGTCATTAGAGCATTTAGTGTGCTCATTGTTTCTAGCATCTGTGTGTAAGGCGGCTAAATTCAGTGTTTCATATCTGATTTGATGTAATTCATCTGTGTTTCCACTGAAATATTGCTAACCTCAAGCAGGTTTGTTCTAGCCAATTTTATCTTGGGAGGAATCAAAAAGTAACGTTTAAACTGTGAGATTTACAGTAAAATAGTCAATCATAGTGAAGGCTGGATTGTGTGCAATTCTATTCATTTTGCTTTCCCAGTTCCTAGTTGTATCAAGTTCTATTCTTACTCTACTGTTAATGTTGTTAATGGTAGGGAGTGACCTGCTGTTTCCTTTGAAAGCCAAAAAAAGTTCCAGGGCTTCCTCGTCTCCTTGAAGATCAGTCATCCACAAAGAATAATGCATGATACTAATTCAATCTTAGAGAAATTTATACTAGAGTAA

Ace file of the UniGene sp_v1.1_unigene885

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Signal recognition particle 54 kDa protein 2 n=8 Tax=Magnoliophyta RepID=SR542_SOLLC	-	-	87%
FL-Next	sp=Signal recognition particle 54 kDa protein 2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	89%
Blast2go	signal recognition particle 54 kda subunit	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	93%
Blast2go	cytoplasm	GO:0005737	Cellular Component	93%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	93%
Blast2go	AAA+ ATPase domain	IPR003593	-	93%
Blast2go	Signal recognition particle, SRP54 subunit, M-domain	IPR004125	-	93%
Blast2go	Signal recognition particle, SRP54 subunit	IPR006325	-	93%
Blast2go	Signal recognition particle, SRP54 subunit, helical bundle	IPR013822	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P49972

Fln msg:

Fln protein: MVLAELGGSISRALQQMSNATIIDEKALNDCLNEISRALLQSDVQFKMVRDMQVNIKKIVNLEDLAAGHNKRRIIQQAIFNELCKMLDPGKPSYTPKKGKPSVVMFVGLQGAGKTTTCTKYAHYYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPVKIAEDGVERFKKENYDLIIVDTSGRHKQEAALFEEMRQVSAATNPDLVIFVMDSSIGQAAFDQAQAFKQSVSVGAVIITKMDGHAKGGGALSAVAATKSPIIFIGTGEHMDEFEAFDVKPFVNRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMIPGFSAELMPKGREKESQARIKRFMTTMDSMTNEELDSSNPKLMTESRIMRVARGSGRPVREVMEMLEEFKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGGKNFGGMFGDK*

Protein Length: 494

Fln nts: ATTGGGGAGGGCAAAGGAATTGATCGAAGAAACCAAAGCACCAGAGAAAACCAATTCCGGAGGAACACGCAGGTCATAATTAGAAACTACTACGAGCAGGTCATAGTTAGAGACTATTACGACATAAAAACGTGGAGGCTTTTCACTGCTGCTACCCATTTCAGAATAGTTTGAGATCGGAAAGTGTCGTGAGATATTGGGGTTGAATTCTTCGCGATTTCGGTCCGGAGGAGACTTGAATCCTTCGAGGTTTCAGCCATCTTTGAGCGAAA_-_ATGGTGTTAGCAGAGCTAGGCGGGAGCATCTCCCGCGCCCTACAGCAGATGAGCAATGCCACAATTATTGACGAGAAAGCATTGAACGACTGCTTGAATGAGATTTCGAGGGCGTTACTACAGTCTGACGTTCAATTTAAAATGGTCAGGGACATGCAGGTGAACATAAAAAAGATTGTCAATTTGGAAGATCTCGCCGCTGGTCACAACAAACGCAGGATCATTCAACAGGCCATTTTCAATGAATTGTGTAAAATGCTGGATCCTGGAAAACCCTCCTATACACCAAAGAAAGGAAAGCCGAGTGTTGTCATGTTTGTAGGATTACAGGGTGCTGGGAAGACTACTACTTGTACAAAGTATGCTCACTACTATCAAAAGAAAGGCTGGAAGCCAGCCTTGGTTTGTGCAGACACATTTAGAGCTGGTGCATTTGATCAGCTGAAACAGAATGCGACTAAGGCCAAGATTCCCTTTTATGGCAGCTACACAGAGACAGATCCTGTAAAAATTGCTGAGGATGGTGTAGAAAGGTTCAAAAAGGAAAATTATGATCTCATAATTGTGGATACTAGTGGGCGGCACAAACAAGAAGCTGCACTATTTGAGGAAATGCGCCAAGTGTCTGCAGCAACGAATCCAGACCTTGTGATATTTGTTATGGATAGTAGTATTGGACAAGCTGCATTTGATCAAGCCCAAGCATTCAAGCAGAGTGTTTCTGTAGGAGCTGTAATTATTACCAAGATGGATGGTCATGCAAAAGGTGGAGGTGCACTAAGTGCTGTTGCAGCAACAAAAAGTCCCATTATATTTATTGGTACAGGAGAGCATATGGATGAGTTTGAGGCTTTTGATGTGAAGCCATTTGTCAACAGACTTTTAGGCATGGGAGACTGGTCGGGTTTTATGGATAAAATTCATGAAGTTGTTCCTATGGATCAGCAACCAGAACTTTTACAGAAATTATCAGAAGGCAATTTCACATTGCGAATCATGTATGAGCAGTTCCAAAATATTCTTAAAATGGGACCCATTGGTCAGGTATTTTCGATGATTCCTGGATTTAGTGCTGAGTTAATGCCCAAGGGTCGTGAAAAGGAAAGTCAAGCACGCATTAAAAGGTTCATGACGACGATGGATTCCATGACCAATGAAGAACTTGATAGTTCAAATCCAAAGCTTATGACAGAGTCACGAATAATGCGTGTTGCACGTGGGTCTGGTCGTCCTGTTAGGGAAGTAATGGAAATGCTAGAAGAGTTTAAACGCTTAGCTAAGATTTGGAGTAAGATGAAGGGACTTAAAATCCCCAAGAAGGGTGACATGAGTGCATTATCTCGGAATATGAATGCTCAGCACATGAGCAAGGTTCTTCCTCCACAAATGCTGAAGCAGATTGGTGGTATGGGAGGGTTGCAGAACTTAATGAAGCAGATGGGTGGCAAAAACTTTGGAGGCATGTTTGGAGACAAGTAG___GTCATTAGAGCATTTAGTGTGCTCATTGTTTCTAGCATCTGTGTGTAAGGCGGCTAAATTCAGTGTTTCATATCTGATTTGATGTAATTCATCTGTGTTTCCACTGAAATATTGCTAACCTCAAGCAGGTTTGTTCTAGCCAATTTTATCTTGGGAGGAATCAAAAAGTAACGTTTAAACTGTGAGATTTACAGTAAAATAGTCAATCATAGTGAAGGCTGGATTGTGTGCAATTCTATTCATTTTGCTTTCCCAGTTCCTAGTTGTATCAAGTTCTATTCTTACTCTACTGTTAATGTTGTTAATGGTAGGGAGTGACCTGCTGTTTCCTTTGAAAGCCAAAAAAAGTTCCAGGGCTTCCTCGTCTCCTTGAAGATCAGTCATCCACAAAGAATAATGCATGATACTAATTCAATCTTAGAGAAATTTATACTAGAGTAA

Fln Alignment:

sp_v1.1_unigene885___MVLAELGGSISRALQQMSNATIIDEKALNDCLNEISRALLQSDVQFKMVRDMQVNIKKIVNLEDLAAGHNKRRIIQQAIFNELCKMLDPGKPSYTPKKGKPSVVMFVGLQGAGKTTTCTKYAHYYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTETDPVKIAEDGVERFKKENYDLIIVDTSGRHKQEAALFEEMRQVSAATNPDLVIFVMDSSIGXXXXXXXXXXXXSVSVGAVIITKMDGHAKGGGALSAVAATKSPIIFIGTGEHMDEFEAFDVKPFVNRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMIPGFSAELMPKGREKESQARIKRFMTTMDSMTNEELDSSNPKLMTESRIMRVARGSGRPVREVMEMLEEFKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGGK-----NFGGMFG
P49972_____________MVLAELGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSIVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFKKENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDSRIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGGMGGMFG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
974		88		11	0.923564
1144	11			88	0.923564
1190		40		60	1.0
1627	93	6			0.999153
2078	11	88			0.923564
2129	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain