SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene829

Length: 1724 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene829

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Blast2go	stylosa protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	82%
Blast2go		GO:0016481	Biological Process	82%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	82%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	82%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	82%
Blast2go	WD40-repeat-containing domain	IPR017986	-	82%
Blast2go	WD40 repeat, conserved site	IPR019775	-	82%
Blast2go	WD40 repeat, subgroup	IPR019781	-	82%
Blast2go	WD40 repeat 2	IPR019782	-	82%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	82%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 428 - 314

Fln protein: MSNSFRGNDQAASKGQNGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVMSMAGALQNSGSSSKTLIMYGSDGSGALASPSNPLADIDRFVEEGSLDDNVESFLSHDDTDARDTVGRCMDVSKGFSFSEFSCIRASTSKVVCCHFSPDGKLLASAGHEKKAVLWNMDTLKAKGSLEEHSFLITDVRFSPNSTRLATSSFDRTVKVWDADNPNYTLRTFSGHTGSVMSLDFHPNNEDLICSCDGESEVRYWSVNQGACTRYFKGGMSQVRFQPRLGRYLAAAAENVVSIFDVETGTCLHSLQRHTKPVHSVCWDAKGNYVASVSEDSVRVWNLGSGGDGECVHELNCSGNKFHSCVFHPKYQSLLVIGCYQSLELWNMAENKSMTIPAHEGLIAALAASEATGMVASASHDKSVKLWK*

Protein Length: 429

Fln nts: CAGAACAATCAACAACAGCAACTTCAACAGCAGGCTCTGTCAAACCAGCAGTCCCAGGTTACTAGCCATCAGCAGCAGCAGCAAGAGAAACTTGGTGTTGCTGGTGTTTCAGTTGAGGGGAGT_-_ATGTCAAACTCTTTTCGTGGAAATGATCAGGCTGCATCTAAGGGTCAAAATGGAAGAAAAAGAAAGCAGCCTGGGTCATCTTCTGGTCCAGCTAATAGCTCAGGAACTGCAAATACTACTGGTCCATCCCCAAGTTCTGCACCTTCGACTCCATCTACTCATACCCCTGGAGATGTAATGTCCATGGCTGGTGCATTGCAGAATAGTGGCAGCTCATCTAAGACGTTGATAATGTATGGATCTGATGGATCTGGGGCCCTTGCTTCACCATCCAATCCTCTAGCTGATATAGATCGGTTTGTGGAAGAGGGGTCCTTGGATGATAATGTGGAGTCATTTCTATCTCATGATGATACAGATGCTAGGGATACTGTAGGCCGGTGTATGGATGTTAGCAAAGGGTTTTCATTTTCGGAGTTCAGTTGCATTCGGGCCAGCACTAGTAAAGTTGTTTGTTGCCACTTTTCCCCTGATGGAAAATTACTAGCCAGTGCTGGACATGAGAAGAAGGCAGTATTGTGGAACATGGACACTCTCAAAGCTAAAGGTTCCCTTGAAGAGCATTCCTTTTTGATCACTGATGTGCGATTCAGTCCTAATTCAACGCGCTTGGCTACATCCTCTTTTGACAGAACAGTGAAAGTCTGGGATGCAGACAATCCAAACTATACCTTGCGTACTTTTTCTGGTCATACTGGGTCTGTAATGTCTCTTGATTTCCACCCAAACAATGAAGATCTTATTTGCTCTTGTGACGGGGAAAGTGAAGTCCGTTACTGGAGTGTTAACCAGGGTGCATGCACAAGATATTTCAAGGGTGGTATGAGTCAAGTGCGATTTCAACCTCGTCTTGGCAGGTACCTTGCTGCAGCAGCTGAGAATGTTGTGTCAATATTTGATGTCGAGACTGGAACTTGCTTGCATTCTCTACAGAGACATACAAAGCCTGTGCACTCTGTTTGCTGGGATGCAAAAGGAAATTATGTGGCATCTGTTAGTGAGGATTCAGTGAGAGTATGGAACCTTGGTTCTGGAGGTGATGGAGAATGTGTACATGAACTAAACTGTAGTGGAAATAAGTTCCATTCATGCGTCTTCCATCCTAAGTATCAATCGCTTTTGGTCATTGGCTGCTATCAGTCTTTGGAGCTATGGAATATGGCCGAGAACAAGAGTATGACAATTCCTGCTCATGAAGGCCTCATTGCTGCATTAGCTGCTTCCGAGGCAACAGGCATGGTTGCTTCTGCAAGTCATGACAAGAGTGTGAAGCTATGGAAGTGAATAATAATATGGTCTTCACAATATAGCAGTTCAGTTTTTTCTTCATTGTTGCCTTGTTTGATTGCAATCGTGGCAAGATTTGCATAGCTGTTGTACAATTTAACTTGTTTTAGTGAGTAATAATAGAAAACAGCTAATTTATGTGCTTCATTTCTTCCTTTTTCCAAAATGACATGGGGAAGCTTCTTAACCTGTTAATAGTTCATAAAAATATTGATGTGGCTCTATAAATATATACTTATGACTGAAGCATATTGTTTATTTATATTTTTTGTAAACTCTTCGAGCATTATGATTGTTTTTTGACTTTGACAGGA

Fln Alignment:

sp_v1.1_unigene829___IRASTSKVVCCHFSPDGKLLASAGHEKKAVLWNMDTLKAKGSLEEHSFLITDVRFSPNSTRLATSSFDRTVKVWDADNPNYTLRTFSGHTGSVMSLDFHPNNEDLICSCDGESEVRYWSVNQGACTRYFKGGMS-----QVRFQPRLGRYLAAAAE-NVVSIFDVETGTCLHSLQRHTKPVHSVCWDAKGNYVAS---VSEDSVRVW
A9NPC1_____________LKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGK-FILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
194		75	25		0.996473
195			25	75	0.996473
325	87	12			0.992554
326	87		12		0.992554
328	87	12			0.992554
332	12		87		0.992554
334	87	12			0.992554
335			87	12	0.992554
336		87		12	0.992554
337			12	87	0.992554
338		87	12		0.992554
339	87	12			0.992554
341		87	12		0.992554
343	87	12			0.992554
345		12	87		0.992554
346	87			12	0.992554
348	12		87		0.992554
817	88			11	0.923564
819			11	88	0.923564
820		11	88		0.923564
821	11		88		0.923564
824		88	11		0.923564
825	11			88	0.923564
830			11	88	0.923564
832		11		88	0.923564
942		10		90	0.992513
963		10		90	0.992513
1129		10		90	0.992513
1457		12		87	0.993502
1458	10		90		0.991528
1460	10	90			0.991528

SSRs (tot: 1)

Start position	End position	Sequence	Length
70	83	CAG CAG CAG CAG CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain