SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene822

Length: 1596 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene822

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	aspartate glutamate uridylate kinase family protein	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACC9

Fln msg: your sequence is longer than subject: 306 - 158

Fln protein: MGSDDDDFGKANLSSRCEWHPETVSRLLDSYAEKCSRGKGYLKTKDWEEIVNYVNIQYEGSKTAKTMKQCREKVDSLKRRYKVEKRKAEFRGWSHVEWSFYEKLDEIMHSLKRNGNSTAISDRHSFELVEPLDFEDAFETDRNNHHSFMNNRNGIHGSSNEHNNNRLELIASEDKGKGLLESTDGLCDVVLNAVGYENGVELLEPQNCKRRKSFKGLGFDQPGANSQRPAANNDNNPVQALADALVGFSEVYSRIEVAKMELFTKMNIELARLRKRRRKNGSGGVSGFSSVSVSSSSASSDSEEE*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCCGTCACTCCGGAAGACCGAGTTTCCTTCCGAAAGCAGCAGAAACCCTAGTTCAGTGTTCTTGCTGTAGAGGGATCGATCTGCTGGCCAGACTCGACCCACATCGACGAAAGGAACGCATCAAATGCTGAAAAATTTCCTCAAAAAGCGCGAAGATTGAAGGAGTTAAAGGTTTCGAATCC_-_ATGGGCAGCGACGACGATGACTTTGGAAAGGCAAACCTGAGCTCCCGCTGCGAATGGCACCCGGAGACAGTTTCCCGCCTGCTGGACAGCTACGCCGAAAAATGTTCCCGTGGCAAAGGCTACTTGAAGACGAAAGACTGGGAAGAAATCGTCAATTACGTTAACATACAGTACGAGGGTTCGAAAACTGCAAAAACTATGAAGCAGTGTAGAGAAAAAGTGGACAGCTTGAAAAGGCGCTACAAGGTGGAGAAGCGGAAAGCGGAGTTTCGAGGTTGGAGTCACGTGGAGTGGTCATTCTACGAGAAACTGGACGAGATCATGCACTCTCTGAAAAGAAACGGCAACAGCACTGCTATCTCGGACCGCCACTCGTTCGAGCTCGTGGAGCCGTTGGATTTCGAGGACGCCTTCGAAACTGACCGCAATAATCACCATAGTTTTATGAATAACAGGAACGGTATCCATGGGAGCAGTAATGAACATAATAATAACCGGCTGGAGCTTATTGCTTCGGAAGACAAGGGCAAGGGTTTGCTGGAAAGCACGGACGGGCTTTGCGATGTTGTGTTGAATGCTGTAGGCTATGAGAACGGAGTAGAATTACTGGAGCCGCAGAATTGTAAGCGGAGGAAGTCGTTCAAAGGGCTCGGCTTTGATCAGCCGGGCGCTAATAGTCAGAGACCCGCCGCGAACAATGATAATAACCCTGTCCAGGCTCTGGCGGACGCTTTGGTGGGATTTTCGGAGGTTTATAGCCGAATCGAAGTCGCTAAAATGGAGCTTTTCACGAAAATGAATATAGAGCTCGCCAGACTCCGGAAGAGGAGAAGAAAGAACGGCAGCGGCGGCGTTTCCGGCTTCAGTTCTGTTTCAGTTTCTTCAAGCTCTGCATCTTCAGATTCAGAAGAAGAATAA___ATTGCAGTTAATGCCTTCCGGTGCATTACATTAAATGCCAGAGTCCTAGGGGATCGATTTTCCTTCATTTATTCAGTCGGCGCTGCCGCTGAAGTTTTCTGACCCCCGAGGGCATAATTTAACCGGACGAGCCAAATGTGGCATGAAGGATTCTCCGTTTGTCTAAAGTTTCTGTCAATATTGACAGAAAGTAAAGGAGACGGACGGAACCGCTAATTATGTTTTGCGAAGGTGTAATGTTTAAGGTTTTTGCAGTTCCGTTAGAAGACGGGAAATTTTTGTGAATCGTTTAGAGACAGAGAAGTAATGAGGTAAGAAACTCTGTAAATTCCACTAGCTATATACACCTGGAATTAGGCTTTTAAATGCCGGTGACATCCGTCAGGCAACTCTTTCATGCCATTTCTGTCAAAATGTTTTCGTCACTTTGAATGTTATCTGCTACATTTGCATTTGTGTATACACTGTTTCACATTATCGTAC

Fln Alignment:

sp_v1.1_unigene822___MNNRNGIHGSSNEHNNNRLELIASEDKGKGLLESTDGLCDVVLNAVGYENGVELLEPQNCKRRKSFKGLGFDQPGANSQRPAANNDNNPVQALADALVGFSEVYSRIEVAKMELFTKMNIELARLRKRRRKN
D5ACC9_____________MNNRNGIHGSSNEHNNNRLELIASEDKGKGLLESADGLCDVVLNAVGYENGVELLEPQNCKRRKSSKGLGFDQPGANSQRPPASSDNNPVQALADALVGFSEVYSRIEVAKMELFTKMNLELARLRKRRRKN

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
606	11	88			0.923564
725	90		10		0.90298
960		10		90	0.90298
998	60	40			1.0
1182		22		77	0.999999
1183			22	77	0.999999
1185	77	22			0.999999
1186			22	77	0.999999
1188		77	22		0.999999
1191		22		77	0.999999
1193			77	22	0.999999
1194			77	22	0.999999
1195		77	22		0.999999
1200		77		22	0.999999
1202	22		77		0.999999
1205	11		77		0.968132
1512	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain