SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene672

Length: 1537 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene672 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase SAGA associated factor SGF29 (ISS) [Ostreococcus tauri] emb\|CAL53981.1\| Histone acetyltransferase SAGA associated factor SGF29 (ISS) [Ostreococcus tauri]	-	-	2.0e-13	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT15

Fln msg: Overlapping hits, possible frame ERROR between 375 and 365,

Fln protein: MSSQVYDDANEHLKMLDNLRKEQDLVIQKINKMHQRLSQASPExxxxxINDSVWLKLRSHYTKAKDLAEKEERISNAIIHQLDTWLQPGQSLSHRKKLEVSEQKRKRIKADVEPARLTSPSAMLRMPPEHASVLIGDQVAARVTPENADKDDWIVVKVIRFDREANKYEVIDEEPGDDEESGQRKYKLPPSCIIPFPKRTDASAASDFPTGSQVLAVYPGTTALYKAVVASHHKKKNDDYFLEFDDDEEDGIDGLPKRAVPFYHVVQLPEGHRQ*

Protein Length: 276

Fln nts: CGTCGTGATGGGGACATTAAATTTTGTTTGGTTTACATTTTGGCGAAGAAAAAGTTGTGTGCTAGCTCATATTCAGAAAAAAGCCCTTATTCAACCCAACCGACAAAAATGTTGGTATTCTTCAGACATATTTTCAGTCCAGAGTGCCTAAGTTAAGATGGTCAGTGGTCCAGCGAAAATACTCTTTGATTCTCTACTGTTGAAGTCGATATCGGATTGCCTGTTGTAAGAGTA_-_ATGTCGTCGCAGGTTTACGATGATGCGAATGAGCATCTCAAGATGTTGGACAACCTTCGCAAGGAGCAAGACCTAGTTATCCAAAAGATCAACAAGATGCATCAGAGGCTTTCCCAGGCTTCCCCAGAGxxxxxxxxxxxxxxxATTAATGATAGTGTATGGCTCAAGCTTCGGTCACATTATACCAAGGCAAAGGATCTTGCGGAAAAGGAAGAACGCATATCCAATGCCATCATTCACCAATTGGATACTTGGTTACAACCTGGACAATCTTTGTCACACCGGAAAAAGCTAGAAGTTAGTGAGCAAAAGAGGAAACGGATAAAAGCTGATGTTGAACCTGCCAGGTTGACATCGCCATCTGCTATGTTGCGAATGCCACCTGAACATGCAAGTGTCCTAATCGGGGATCAGGTTGCTGCCAGAGTTACTCCTGAAAATGCAGATAAAGATGATTGGATAGTGGTGAAAGTTATCCGTTTTGACAGGGAAGCAAATAAGTATGAAGTGATTGATGAGGAGCCGGGTGATGATGAAGAGAGTGGTCAGAGGAAGTATAAGTTGCCACCTTCATGTATTATACCTTTCCCAAAACGCACAGATGCTTCTGCTGCATCAGACTTTCCAACTGGTAGCCAAGTTCTAGCTGTATACCCTGGAACTACGGCACTTTATAAAGCTGTGGTTGCTTCTCATCACAAGAAGAAAAATGATGATTATTTTCTCGAATTTGATGATGATGAAGAAGATGGAATTGATGGACTTCCGAAAAGAGCGGTTCCATTCTATCATGTCGTGCAGCTTCCAGAAGGGCATCGCCAGTGA___AAACATCTAGAATATCAACATCATAGACACAAAACCAAAAGTGTCTATCATGTTATATGTTATTTATTACTGAAATGTTATGTTGAAGAATCAAATTCCACAAAGATTGGCGTTCTTCATTCAAGACCGTTGTCTATTTAAATTGGAATGTCAAGATATTAGATACGATAGTAATATAATGGATGGGGAGTGTGTGCTGTTTGGTTAATATATCATAGGCCATGGGGCATGCCAATTCTTGCGCAGTTTGACATCTATATAACTATAAGCATGGTTGTATTTATCAAGAGCTATCAAGGAACGAGATCATGACCGGCATTGGAGCCAAGGTTGCTATGTTTCTTTTCTGTTATCAATTCAAGTAACAGACATGAACGAGCAAACAGCCAGTATGCATATGCTTCTATTAATGAGAAATTCAAAACCCATTCATTTCATTGGGAACGTCTAATATATTCCATATTAGTGATGCTTCGAACT

Fln Alignment:

sp_v1.1_unigene672___SQVYDDANEHLKMLDNLRKEQDLVIQKINKMHQRLSQASPExxxxINDSVWLKLRSHYTKAKDLAEKEERISNAIIHQLDTWLQPGQSLSHRKKLEVSEQKRKRIKADVEPARLTSPSAMLRMPPEHASVLIGDQVAARVTPENADKDDWIVVKVIRFDREANKYEVIDEEPGDDEESGQRKYKLPPSCIIPFPKRTDASAASDFPTGSQVLAVYPGTTALYKAVV-ASHHKKKNXXXXXXXXXXXXXXXXXLPKRAVPFYHVVQLPEGHRQ
A9NT15_____________SSSYESVNANLKILDNLRKEQEIVISKINKMHQKLSQASPExxxxINDNVLLKLRSHYIKAKDLAEKEEHISNAIIVQLDALL-PGQSLSHRKKL-VSEQKRKRIKADVEPARLTSPSAMLRTPPEHANVLIGEQVAARVTPENADKDDWIVVKVIRFDREANKYEVIDEEPGDDEESGQRKYKLPPSCIIPFPKRTDASTAADFPTGSQVLAVYPKTTALYKAAVFASHRKRKNDDYLLEFDDDEEDGCDGLPKRSVPFYHVVQLPEGHRQ

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1473		81		18	0.999994
1474			10	90	0.90298
1475	90	10			0.90298
1480	88	11			0.923564
1484		87	12		0.992554
1485			12	87	0.992554
1487		12		87	0.992554
1488	12			87	0.992554
1491			12	87	0.992554
1492	12			87	0.992554
1493	25	62	12		1.0
1494		42	57		1.0
1495		50		50	1.0
1496		50		50	1.0
1497	50		50		1.0
1498	50			50	1.0
1513	66			33	0.997452
1514	66		33		0.997452
1516	66		33		0.997452
1518			33	66	0.997452
1519	33			66	0.997452
1520	66	33			0.997452
1524		33		66	0.997452
1526	33	66			0.997452
1527	33	66			0.997452
1528		66	33		0.997452
1529	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
563	574	TCA TCA TCA TCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain