SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene645

Length: 2612 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene645
ATGGGGGTTGTGGGCATAAATCTCAGGCCCTAATCTGAACTGCCCATCTTAGCATTTGGTCGGGTTTCATTGCCGTAGTAGTACCAATACAATCAAACTGTTGCAGCAATAAGTTTTCTTGCAACTACATCAATTGGGTGTGAATCTTTCTATGCCATTAGTCTTCTCTTGCTGGGAAGCTGAGATGGTCTCTAAGCTGTTCTGGTGCTTGGCCGCATTATTGTGTGGCATTTGCTGCTGCCATTCGTTTTCCCCTGCTCCCTCGCCTGTGGACTTTCAGGAGATAAGCGGTATTCAGCAATGCAACCAGAGTGATGTGCAGGCATTGATCAGCTTCAAGCAAACTGTTAGCAGTTCGAGCCCTCTGAATTGGGAGGTCAACAGGAGTTGCTGCGCTTGGGAGGGCGTGACGTGTGGATTATTATCTCTGCAGCAGTTTAGCGTCACAAAGCTCCGGTTGCCAGGAAGAAGGCTCAGGGGAACTCTTTCCGACTCATTAGGTCGATTGGCTCACCTCAGAGAGATCAATGTTTCATTCAATTTGCTTACTGGTGAAGTTCCAGGTAGGCTATTTCTTTTACAGCATCTGGAAGTATTGGATTTAAGTTTCAATAATCTCTCCATTATTGCTCCAGTTGCACAAGGGCTTAATTCTATTCGTACTTTCAACATTTCAAGCAATAGTTTTCGAGGAAATGTCCCCCAACTTGGCTCCGTTGTAAACCTCACATCCTTTAATGTCAGCAACAACTCCTTTACTGGCCCCATTCCAGTACATATTTGTCAGAATTCTAGTTCTCTTCAGTATGTAGATTTTTCACTGAATAGATTCAATGGCACTCTCAAGGAAGGCCTGGGGCAATGTAGGAAGCTCCAAGCATTGAATGCAGGATTCAACTCTCTGGCTGGGCCAATTCCAAATGATCTCTATGGCTTGTCATCTTTGAGGCAGCTGCGTCTGCCTTTTAACCAATTTACGGGAACACTTCGTGCAGAAATAGGGAACTTGTCCAATCTTTCAGTTCTGTCCCTTTTTGCTAATAGATTGACGGGACTTATTCCTCTGGAGCTTGGAAAGCTTGAAAATTTGGAGCGGTTAATTCTTCACAGTAATGGATTCACTGGTATGGTACCTTCTCGTCTGTCCCAATGCAAGAAGTTGAAAGTTCTGAATTTGAAAAACAACTCTCTCACGGGAGTTATTGAACTGAATTTTACAAGCCTGCCTGAGCTAATTTATCTGGATTTAGCTAGCAACAATTTGTCTGGCAGTATTCCGCCTAGCTTGTGGACCTGCAAAAATATCCAGTCTGTGAGCCTGGCAAGAAACAAATTAAGCGGTGACATTCCTCCTGGTATGGCATCCCTTCAGGTTCTCTCTTTTTTCTCTATCTCAAATAACAGTTTTATTAATATTACAAGCGCCCTAACAGCTCTGCAGGACTGTCATAACCTTACCACGTTGGTTCTGTCAAAGAATTTTTATGGGGATATGATTCCAACTAATATACATGGATTTCCCATGCTCCGGACATTAAGTCTTGGAAATTGTGCTCTTTCCGGGCAAGTTCCAGTTTGGCTCCTGAAATGTCCAAATTTACAGGTCTTGGATCTTTCCTGGAATAATCTGAACGGAGTTATTCCTAGTTGGTTAAACACTCTTCAATATCTTTTTTATTTGGACATGGCAAATAATTCTCTGTCAGGACCAATTCCAAAGCAGCTTATGGAATTACCTAGTTTTAAGTCAATACAAACACCCCCTGTATCAGCTCAAACTCCCTTTGAGCCTCCTTTATATGTAAAGCAAAATCAAAAAGCTTTTGGGATGCAGTACAATCTGTTGTCTAATCTCCCCCCTTCGCTATACTTGGCCAGAAACAATCTCAGTGGCACTCTAAGCCCTGAGATTGGGCAGATGAAAATGCTTCATATTCTAGATTTCAGTCATAATAATTTCTCGGGGATAATCCCAGACACACTGTCTAACTTGACAAATTTGGAGACCTTAGATTTGTCAAACAATAATTTTGTTGGAATCATACCACCATCCCTGAAGGATCTCACATTCCTAGCGAGGTTCAATGTCTCTAATAATCACTTGCATGGGTTAATACCTTCTGGACATCAATTTGATACCTTTAACAAGTCTAGTTTTGAAGGAAACCTTGGTCTCTGTGGCCAGCCTCTTACTACCACCTGCAGTCCGCCTGTTTCAATACCAGGGGTACCTATTGCTGCACATGGAATCAATAGGCTGGACAAAAATACCATTCTTGGCATAACTATCAGTGTTGGTGTTGGGATTGCTTTTCTTCTGGCTGCAGTTCTTTGGAATCAATCAAGAAGACAGGTAACAGAGCAGGGAGTTGCAGATGAGATGGATTTTGACATGCCTCACAGGCTTTCTGATGCCTTGGGATCTAACTTGGTGCTGTTATTCCAGAATCATTGTCGTAAGGACCTTGCTATTGCGGATCTCTTGAAAGCCACCGGTAATTTTGACCAGGCAAACATCATTGGCTGTGGAGGCTTTGGATTGGTATATAGAGCCACTCTGGCAGATGGCACAAAAATTGCAATTAAAAGGTTGACAGGAGAATAGTGGTCAG

Ace file of the UniGene sp_v1.1_unigene645

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytosulfokine receptor, putative n=1 Tax=Ricinus communis RepID=B9SQH2_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	protein	-	-	62%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	62%
Blast2go	peptide receptor activity	GO:0001653	Molecular Function	62%
Blast2go	transmembrane signaling receptor activity	GO:0004888	Molecular Function	62%
Blast2go	catalytic activity	GO:0003824	Molecular Function	62%
Blast2go	chloroplast	GO:0009507	Cellular Component	62%
Blast2go	plasma membrane	GO:0005886	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	62%
Blast2go	Leucine-rich repeat	IPR001611	-	62%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	62%
Blast2go	Protein kinase-like domain	IPR011009	-	62%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	62%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	62%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MPLVFSCWEAEMVSKLFWCLAALLCGICCCHSFSPAPSPVDFQEISGIQQCNQSDVQALISFKQTVSSSSPLNWEVNRSCCAWEGVTCGLLSLQQFSVTKLRLPGRRLRGTLSDSLGRLAHLREINVSFNLLTGEVPGRLFLLQHLEVLDLSFNNLSIIAPVAQGLNSIRTFNISSNSFRGNVPQLGSVVNLTSFNVSNNSFTGPIPVHICQNSSSLQYVDFSLNRFNGTLKEGLGQCRKLQALNAGFNSLAGPIPNDLYGLSSLRQLRLPFNQFTGTLRAEIGNLSNLSVLSLFANRLTGLIPLELGKLENLERLILHSNGFTGMVPSRLSQCKKLKVLNLKNNSLTGVIELNFTSLPELIYLDLASNNLSGSIPPSLWTCKNIQSVSLARNKLSGDIPPGMASLQVLSFFSISNNSFINITSALTALQDCHNLTTLVLSKNFYGDMIPTNIHGFPMLRTLSLGNCALSGQVPVWLLKCPNLQVLDLSWNNLNGVIPSWLNTLQYLFYLDMANNSLSGPIPKQLMELPSFKSIQTPPVSAQTPFEPPLYVKQNQKAFGMQYNLLSNLPPSLYLARNNLSGTLSPEIGQMKMLHILDFSHNNFSGIIPDTLSNLTNLETLDLSNNNFVGIIPPSLKDLTFLARFNVSNNHLHGLIPSGHQFDTFNKSSFEGNLGLCGQPLTTTCSPPVSIPGVPIAAHGINRLDKNTILGITISVGVGIAFLLAAVLWNQSRRQVTEQGVADEMDFDMPHRLSDALGSNLVLLFQNHCRKDLAIADLLKATGNFDQANIIGCGGFGLVYRATLADGTKIAIKRLTGE*

Protein Length: 819

Fln nts: ATGGGGGTTGTGGGCATAAATCTCAGGCCCTAATCTGAACTGCCCATCTTAGCATTTGGTCGGGTTTCATTGCCGTAGTAGTACCAATACAATCAAACTGTTGCAGCAATAAGTTTTCTTGCAACTACATCAATTGGGTGTGAATCTTTCT_-_ATGCCATTAGTCTTCTCTTGCTGGGAAGCTGAGATGGTCTCTAAGCTGTTCTGGTGCTTGGCCGCATTATTGTGTGGCATTTGCTGCTGCCATTCGTTTTCCCCTGCTCCCTCGCCTGTGGACTTTCAGGAGATAAGCGGTATTCAGCAATGCAACCAGAGTGATGTGCAGGCATTGATCAGCTTCAAGCAAACTGTTAGCAGTTCGAGCCCTCTGAATTGGGAGGTCAACAGGAGTTGCTGCGCTTGGGAGGGCGTGACGTGTGGATTATTATCTCTGCAGCAGTTTAGCGTCACAAAGCTCCGGTTGCCAGGAAGAAGGCTCAGGGGAACTCTTTCCGACTCATTAGGTCGATTGGCTCACCTCAGAGAGATCAATGTTTCATTCAATTTGCTTACTGGTGAAGTTCCAGGTAGGCTATTTCTTTTACAGCATCTGGAAGTATTGGATTTAAGTTTCAATAATCTCTCCATTATTGCTCCAGTTGCACAAGGGCTTAATTCTATTCGTACTTTCAACATTTCAAGCAATAGTTTTCGAGGAAATGTCCCCCAACTTGGCTCCGTTGTAAACCTCACATCCTTTAATGTCAGCAACAACTCCTTTACTGGCCCCATTCCAGTACATATTTGTCAGAATTCTAGTTCTCTTCAGTATGTAGATTTTTCACTGAATAGATTCAATGGCACTCTCAAGGAAGGCCTGGGGCAATGTAGGAAGCTCCAAGCATTGAATGCAGGATTCAACTCTCTGGCTGGGCCAATTCCAAATGATCTCTATGGCTTGTCATCTTTGAGGCAGCTGCGTCTGCCTTTTAACCAATTTACGGGAACACTTCGTGCAGAAATAGGGAACTTGTCCAATCTTTCAGTTCTGTCCCTTTTTGCTAATAGATTGACGGGACTTATTCCTCTGGAGCTTGGAAAGCTTGAAAATTTGGAGCGGTTAATTCTTCACAGTAATGGATTCACTGGTATGGTACCTTCTCGTCTGTCCCAATGCAAGAAGTTGAAAGTTCTGAATTTGAAAAACAACTCTCTCACGGGAGTTATTGAACTGAATTTTACAAGCCTGCCTGAGCTAATTTATCTGGATTTAGCTAGCAACAATTTGTCTGGCAGTATTCCGCCTAGCTTGTGGACCTGCAAAAATATCCAGTCTGTGAGCCTGGCAAGAAACAAATTAAGCGGTGACATTCCTCCTGGTATGGCATCCCTTCAGGTTCTCTCTTTTTTCTCTATCTCAAATAACAGTTTTATTAATATTACAAGCGCCCTAACAGCTCTGCAGGACTGTCATAACCTTACCACGTTGGTTCTGTCAAAGAATTTTTATGGGGATATGATTCCAACTAATATACATGGATTTCCCATGCTCCGGACATTAAGTCTTGGAAATTGTGCTCTTTCCGGGCAAGTTCCAGTTTGGCTCCTGAAATGTCCAAATTTACAGGTCTTGGATCTTTCCTGGAATAATCTGAACGGAGTTATTCCTAGTTGGTTAAACACTCTTCAATATCTTTTTTATTTGGACATGGCAAATAATTCTCTGTCAGGACCAATTCCAAAGCAGCTTATGGAATTACCTAGTTTTAAGTCAATACAAACACCCCCTGTATCAGCTCAAACTCCCTTTGAGCCTCCTTTATATGTAAAGCAAAATCAAAAAGCTTTTGGGATGCAGTACAATCTGTTGTCTAATCTCCCCCCTTCGCTATACTTGGCCAGAAACAATCTCAGTGGCACTCTAAGCCCTGAGATTGGGCAGATGAAAATGCTTCATATTCTAGATTTCAGTCATAATAATTTCTCGGGGATAATCCCAGACACACTGTCTAACTTGACAAATTTGGAGACCTTAGATTTGTCAAACAATAATTTTGTTGGAATCATACCACCATCCCTGAAGGATCTCACATTCCTAGCGAGGTTCAATGTCTCTAATAATCACTTGCATGGGTTAATACCTTCTGGACATCAATTTGATACCTTTAACAAGTCTAGTTTTGAAGGAAACCTTGGTCTCTGTGGCCAGCCTCTTACTACCACCTGCAGTCCGCCTGTTTCAATACCAGGGGTACCTATTGCTGCACATGGAATCAATAGGCTGGACAAAAATACCATTCTTGGCATAACTATCAGTGTTGGTGTTGGGATTGCTTTTCTTCTGGCTGCAGTTCTTTGGAATCAATCAAGAAGACAGGTAACAGAGCAGGGAGTTGCAGATGAGATGGATTTTGACATGCCTCACAGGCTTTCTGATGCCTTGGGATCTAACTTGGTGCTGTTATTCCAGAATCATTGTCGTAAGGACCTTGCTATTGCGGATCTCTTGAAAGCCACCGGTAATTTTGACCAGGCAAACATCATTGGCTGTGGAGGCTTTGGATTGGTATATAGAGCCACTCTGGCAGATGGCACAAAAATTGCAATTAAAAGGTTGACAGGAGAATAGTGGTCAG

Fln Alignment:

sp_v1.1_unigene645___SGIQQCNQSDVQALISFKQTVSSS---SPLNW--EVNRSCCAWEGVTCGLLSLQQFSVTKXXXXXXXXXXXXSDSLGRLAHLREINVSFNLLTGEVPGRLFLLQHLEVLDLSFNNLSIIAPVAQ-GLNSIRTFNISSNSFRGNVP-QLGSVVNLTSFNVSNNSFTGPIPVHICQNSSSLQYVDFSLNRFNGTLKEGLGQCRKLQALNAGFNSLAGPIPNDLYGLSSLRQLRLPFNQFTGTLRAEIGNLSNLSVLSLFANRLTGLIPLELGKLENLERLILHSN-----------------------------GFTGMVPSRLSQCXXXXXXXXXXXXXTGVIELNFTSLPELIYLDLASNNLSGSIPPSLWTCKNIQSVSLARNKLSGDIPPGMASLQVLXXXXXXXXXXXXXTSALTALQDCHNLTTLVLSKNFYGDMIPTNIHGFPMLRTLSLGNCALSGQVPVWLLKCPNLQVLDLSWNNLNGVIPSWLNTLQYLFYLDMANNSLSGPIPKQLMELPSFKSIQTPPVSAQTPFEPPLYVKQNQKAFGMQXXXXXXXXXXXXXARNNLSGTLSPEIGQMKMLHILDFSHNNFSGIIPDTLSNLTNLETLDLSNNNFVGIIPPSLKDLTFLARFNVSNNHLHGLIPSGHQFDTFNKSSFEGNLGLCGQPLTTTCSPPVSIP-GVPI-AAHG-INRLDKNTILGITISVGVGI---AFLLAAVLWNQSR
B8LQX6_____________SSMDAHDRRDVEALLSFRKALTSDPDGSLLNWTSENSDNVCSWNGIFCRKRTKR---VVAIILPGLGLQGRISPSLCSLSLLRVLNLSGNNLTGTIPPEFGQLKSLGILDLRFNFLRGFIPKALCNCTRLQWIRLSYNSLTGSIPTEFGRLVKLEQLRLRNNNLSGSIPTSL-SNCTSLQGLSIGYNSLTGPIPSVLSLIRNLSLLYFEGNSLSGHIPSSLCNCTELRYIAFSHNNLVGRIPAELGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNRLSGNIPSQFGSLRELFQLSIYGPEYVKGSISGSIPSEIGNCSSLVWLDFGNNRVQGSVPMSIFRLP-LSTLSLGKNYLTGSIPEAIGNLSQLTSLSLHQNNFTGGIPEAIGNLIQLTSLILNQNNFTGGIPE--AIGNLSQLTSLTLNQNNFTGGIPEVIDNFSQLQLLDLSKNGFTGQIPGYLASLQELRVLSVAYNKLHGDIPASITNLTQLQVLDLSNNRISGRIPRDLERLQGFKILASSKLSSNTLYEDLDIVI---KGFEYTLTYVLATNTIFDLSSNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRIPLGTQFDTFNATSFQNNKCLCGFPLQACKSMENETPKGMMVGVSHGWLSHVEEHVSL-IALALGLGIGFGGFVGMMILWKKAR

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
354	33		66		0.997452
864	75		25		0.996473
921		80	20		0.995493
922	80			20	0.995493
923	80	20			0.995493
924	80		20		0.995493
940		20	80		0.995493
1011		33		66	0.997452
1015		66	33		0.997452
1016	66			33	0.997452
1017	66		33		0.997452
1018	33			66	0.997452
1020		33		66	0.997452
1024	66		33		0.997452
1026		33		66	0.997452
1028		66	33		0.997452
1030		33	66		0.997452
1031	33			66	0.997452
1033		66		33	0.997452
1035	33			33	0.997753
1349	50	50			1.0
1509	83		16		0.994512
1570	87			12	0.992554
1946	14			85	0.993533
1949		85		14	0.993533
1951	14		85		0.993533
1952	14			85	0.993533
1984		66		33	0.997452
2081	33		66		1.0
2120	85		14		0.993533
2335		16		83	0.994512
2397			80	20	0.995493
2454	87	12			0.992554
2456			12	87	0.992554
2460		12		87	0.992554
2461		12	87		0.992554
2462	12			87	0.992554
2463	12	87			0.992554
2466	87			12	0.992554
2469	12		87		0.992554
2470	87			12	0.992554
2501		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain