SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene622

Length: 2158 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene622
CGTCGTGACCTTGGCTGTGGCTCCCTTCCCGCTTCCCTTCACTTCTTTTCTCCGCGTGCCTTGCCAGGCTGCCCTGTTGTTCATTGGATTCCTCTCCTTCTTTTCATTCCCTGAGGTTTTGCTTCGCAGTAAGCAAAATTTTGACTTTCTCTATTGCTCATGCGAGATTTTGCTTCGCTGTAAGCAAAATTGAATTCTGACTCTCTCTCTCTATCATTCGGGTGATTTTGCAGGGAGGAATTTGGGATCTCAGTCTTTGGCAGCTCTGTTTTACTGATTAAGCTGCCAAATCTCGTTTGGGTGGTTAACCTCATATATCTATTCTCCAAATTTTGGACCTGCAGACCATTTTATTTTGGGCCACCAAGTTCATTTGGGTTGGCTGGAATCTGCCATAGGCGGATTTCTGGGACTGTTTTTTCACTCTTCGGCTCAAAATCTGCTGTTTATGCTACTGAAAGTAAGTCACAGTCTTCTTCATCTCATCTCAAGTAGGTCTGTTGAAATCTGTTATATTTTGTGCATAGAGTGAGATTTCACAGGCGGTATACTTTTGTAGGTCTCTTAAAATGTGTTGTATACTGGTTTTCTAAGCTCAAAGCTCTTGTGGGTCTGCGTTTTTTGACCTTATTCTGTGCCCGGGCTAGTTTTTAAGCCCAAAAGCCCACCTGGGGCAGTTTAAAATCNCCGTTTTTTTGCAGAATACTATGTCATCTAGGCGTAACCCATCTCAATCAGCTTAAATCTGCTCTTTAGGTGGCCAATTTTCTGTGAAACCTTGTTCTACTTCTCTTCAAAGACAAGATTTTAAAGGCCCACAGTCAAGTGGGTCGTTTGGAAATTAGATTATTTGTGTTTAATTTCTGTACTAGGTCCGACCCATCTCTTTTGGCCTGGATCTGCTAGTTATTTCTTATCCTGGTCATACTAAATTTGCAAAATCTTGCTTCACGCGACACTGATTCTTGTAACTTCAACCCCTTTCCGGGTGTGGTGATTCAGGGCTTCCGAGAGAAATCTTGTCATAGTTGCTATTTTTACCTGCACATGACCTTCATTTTATAAACTCGGCCTTGTTTTGGCGTGGGTTTGGAAATACTGAAATAGAACCGTAACAGGGGCCGCTGGTGTGGATTTGGGCTTGGGACATTTACATAATGGGATTCCCGGCAGAATATTCAGGGTTTATTATCTCCAAAATACTATTCAATGCAGTTCTTTTGCTGTCAACAGTCAGAAATGGCATATGCTGGTTCCTCAGATCTATAGGGTTGGCTGATTTACTGGAGTCCGACGTCACATGGGCTGATCTGCCAGAAAATTCAGTGGATGCTGCTTCCAGTGTTTCTGCAGAGATGATCAGAAAGTGCCTTCCTGTTATAGAATATGGCATGTTAGCAGACAGATTTGGGGAATCTGATGCCGTTACTTGTGCCGTTTGTCTCAACGAGTTTGAGAACTCAGATGAGATTCGCCAATTGACGAACTGCTGCCACATCTTTCACAAGAATTGCTTGGACAAATGGCTTGAACACGACCAGAAAACTTGCCCTCTGTGCAGATCTTGTTTAATGTCGGAGGTTGTTGAGGAGGAGGTAACAGAAGAGTCCTGGGCTGTGGAACGGTTGTTATACTTGTTTGGGGAGGACTTAGTGTTTCAATCATAGCATTCAGCCTTTAATAAACACACTCATTTGGTCATTTTTACTGTAAAAGAGTTAAAAGCTAGTTATGGCATAGCTAGGTCGCAGAAAAATTTGACTAGTATGGCCATTTTAACTGTAAATACAGCATAGACTCTGGTAGTTGTATATAGACAGACAGGTATATGTAGCATCGGGGGCGGGGAATGGGGATTGGTGTTAAATATGGTGCCTTTTTGAGGCTTGGGGTTCATAATGGACTGCAGGTTTTGGCACCATAGAGGAATATATTTAATGTTTAGTGTAGGGATCAGGCTGTTTTACACTAGCATCTGTAATATTGTACTTTGGGAGAAATTTCAACACATGTAAATGGAATCATTGGTGGGGGAAATTGGTGAGAGATTGTGAGTTTCATCTGCAGGCAATTTATCTTATCTAGATTTATGTTCATTTTATTGAGCTGCTCATTCAAATTGCTGATACGTGCCATTTTCTATCTTATGTACACACAA

Ace file of the UniGene sp_v1.1_unigene622

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RCF4_RICCO	-	-	8.0e-28	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	protein	-	-	2.2462e-28	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	2.2462e-28	60%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	2.2462e-28	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	2.2462e-28	60%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	2.2462e-28	60%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	2.2462e-28	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTT7

Fln msg: your sequence is shorter than subject: 170 - 189

Fln protein: MGFPAEYSGFIISKILFNAVLLLSTVRNGICWFLRSIGLADLLESDVTWADLPENSVDAASSVSAEMIRKCLPVIEYGMLADRFGESDAVTCAVCLNEFENSDEIRQLTNCCHIFHKNCLDKWLEHDQKTCPLCRSCLMSEVVEEEVTEESWAVERLLYLFGEDLVFQS*

Protein Length: 171

Fln nts: CGTCGTGACCTTGGCTGTGGCTCCCTTCCCGCTTCCCTTCACTTCTTTTCTCCGCGTGCCTTGCCAGGCTGCCCTGTTGTTCATTGGATTCCTCTCCTTCTTTTCATTCCCTGAGGTTTTGCTTCGCAGTAAGCAAAATTTTGACTTTCTCTATTGCTCATGCGAGATTTTGCTTCGCTGTAAGCAAAATTGAATTCTGACTCTCTCTCTCTATCATTCGGGTGATTTTGCAGGGAGGAATTTGGGATCTCAGTCTTTGGCAGCTCTGTTTTACTGATTAAGCTGCCAAATCTCGTTTGGGTGGTTAACCTCATATATCTATTCTCCAAATTTTGGACCTGCAGACCATTTTATTTTGGGCCACCAAGTTCATTTGGGTTGGCTGGAATCTGCCATAGGCGGATTTCTGGGACTGTTTTTTCACTCTTCGGCTCAAAATCTGCTGTTTATGCTACTGAAAGTAAGTCACAGTCTTCTTCATCTCATCTCAAGTAGGTCTGTTGAAATCTGTTATATTTTGTGCATAGAGTGAGATTTCACAGGCGGTATACTTTTGTAGGTCTCTTAAAATGTGTTGTATACTGGTTTTCTAAGCTCAAAGCTCTTGTGGGTCTGCGTTTTTTGACCTTATTCTGTGCCCGGGCTAGTTTTTAAGCCCAAAAGCCCACCTGGGGCAGTTTAAAATCaCCGTTTTTTTGCAGAATACTATGTCATCTAGGCGTAACCCATCTCAATCAGCTTAAATCTGCTCTTTAGGTGGCCAATTTTCTGTGAAACCTTGTTCTACTTCTCTTCAAAGACAAGATTTTAAAGGCCCACAGTCAAGTGGGTCGTTTGGAAATTAGATTATTTGTGTTTAATTTCTGTACTAGGTCCGACCCATCTCTTTTGGCCTGGATCTGCTAGTTATTTCTTATCCTGGTCATACTAAATTTGCAAAATCTTGCTTCACGCGACACTGATTCTTGTAACTTCAACCCCTTTCCGGGTGTGGTGATTCAGGGCTTCCGAGAGAAATCTTGTCATAGTTGCTATTTTTACCTGCACATGACCTTCATTTTATAAACTCGGCCTTGTTTTGGCGTGGGTTTGGAAATACTGAAATAGAACCGTAACAGGGGCCGCTGGTGTGGATTTGGGCTTGGGACATTTACATA_-_ATGGGATTCCCGGCAGAATATTCAGGGTTTATTATCTCCAAAATACTATTCAATGCAGTTCTTTTGCTGTCAACAGTCAGAAATGGCATATGCTGGTTCCTCAGATCTATAGGGTTGGCTGATTTACTGGAGTCCGACGTCACATGGGCTGATCTGCCAGAAAATTCAGTGGATGCTGCTTCCAGTGTTTCTGCAGAGATGATCAGAAAGTGCCTTCCTGTTATAGAATATGGCATGTTAGCAGACAGATTTGGGGAATCTGATGCCGTTACTTGTGCCGTTTGTCTCAACGAGTTTGAGAACTCAGATGAGATTCGCCAATTGACGAACTGCTGCCACATCTTTCACAAGAATTGCTTGGACAAATGGCTTGAACACGACCAGAAAACTTGCCCTCTGTGCAGATCTTGTTTAATGTCGGAGGTTGTTGAGGAGGAGGTAACAGAAGAGTCCTGGGCTGTGGAACGGTTGTTATACTTGTTTGGGGAGGACTTAGTGTTTCAATCATAG___CATTCAGCCTTTAATAAACACACTCATTTGGTCATTTTTACTGTAAAAGAGTTAAAAGCTAGTTATGGCATAGCTAGGTCGCAGAAAAATTTGACTAGTATGGCCATTTTAACTGTAAATACAGCATAGACTCTGGTAGTTGTATATAGACAGACAGGTATATGTAGCATCGGGGGCGGGGAATGGGGATTGGTGTTAAATATGGTGCCTTTTTGAGGCTTGGGGTTCATAATGGACTGCAGGTTTTGGCACCATAGAGGAATATATTTAATGTTTAGTGTAGGGATCAGGCTGTTTTACACTAGCATCTGTAATATTGTACTTTGGGAGAAATTTCAACACATGTAAATGGAATCATTGGTGGGGGAAATTGGTGAGAGATTGTGAGTTTCATCTGCAGGCAATTTATCTTATCTAGATTTATGTTCATTTTATTGAGCTGCTCATTCAAATTGCTGATACGTGCCATTTTCTATCTTATGTACACACAA

Fln Alignment:

sp_v1.1_unigene622___IMGFPAEYSGFIISKILFNAVLLLSTVRNGICWFLRSIGLADLLESDV---TWADLPENSVDAASSVS-----AEMIRKCLPVIEYGMLADRFGESDA--VTCAVCLNEFENSDEIRQLTNCCHIFHKNCLDKWLEHDQKTCPLCRSCLMS
A9NTT7_____________LSSFPTTVSEGVLPILIVNTALSFAIIKDILRSFLQIVGLTTGTEPDFIDPSWPYPPENTPAVSTGHSEAQFIAEEIRQSLPIKRFQSFTDGFVGSDNSHVECAVCLSKFEEGVEIRQLT-CCHLFHRPCLDKWLDHQQITCPLCRSCLIS

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
299			25	75	0.996473
300	25			75	0.996473
301		25	75		0.996473
302		25	75		0.996473
303			75	25	0.996473
307		25		75	0.996473
309	75		25		0.996473
310	75			25	0.996473
656	33		66		0.997452
689	66		33		0.997452
739	50	50			1.0
741		50		50	1.0
804	60			40	1.0
811		40		60	1.0
829	40			60	1.0
942	88	11			0.923564
943	88		11		0.923564
946			12	87	0.992554
952		87	12		0.992554
953	87		12		0.992554
956		87		12	0.992554
958	87			12	0.992554
963	12		87		0.992554
1129	12		87		0.992554
1365			87	12	0.992554
1366	87		12		0.992554
1367	85		14		0.993533
1368	85		14		0.993533
1516	16	83			0.994512
1518			16	83	0.994512
1749	15	84			0.999986
1756	83			16	0.999991
1757	83			16	0.999991
1758	83			16	0.999991
1761		16		83	0.999991
1841		12	75		0.975346
2051		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
201	212	CT CT CT CT CT CT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain