SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene490

Length: 1484 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene490 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycolate phosphatase (EC:3.1.3.18)	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	pglp1 (2-phosphoglycolate phosphatase 1) phosphoglycolate phosphatase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglycolate phosphatase.	EC:3.1.3.18	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC8

Fln msg:

Fln protein: MLSKGAMVAATVTSTFCFRCYNRQSLHDITLFPSFNRLKTSQIASSKAGALRVSSSRPISAMANATRNSSGKAAAPLLSDAEELINSVETFIFDCDGVIWKGDSLIAGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVGEEEIFASSFAAAAYLESIDFPPDKKVYVIGEIGILKELELAGFKYLGGPEDGDKRIELKPGFLLEQDKDVGAVVVGFDRYVNYYKIQYGTLCIRENPGCLFIATNCDAVTHLTDAQEWAGGGSMVGALRGSTQKEPIVVGKPSTFMMDYVSKKFQISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPMLQNPANSIQPDFYTNKVSDLLIKKVANV*

Protein Length: 373

Fln nts: GATATGGTGAGTAGATTAGAGTTTCTCAGCCACATTATCGTTTTCCATTCATGGAAAGACATTCAAATTTAATTGGAAAACGATGATGGTTGGGCAGGTGACGTGAAACCAGAACACATAGT_-_ATGTTGAGCAAGGGAGCTATGGTGGCTGCGACGGTAACATCGACTTTTTGCTTTCGGTGCTATAATCGACAATCGCTACATGATATCACGCTCTTTCCCTCGTTCAATCGTCTTAAGACCTCGCAGATCGCGTCCTCGAAAGCCGGAGCCCTCCGGGTCTCTTCCTCCAGGCCAATATCTGCAATGGCAAATGCCACTCGCAATAGTTCAGGCAAAGCAGCGGCTCCTCTCCTTAGCGACGCGGAAGAATTGATAAACTCAGTGGAGACTTTCATATTCGACTGTGACGGCGTGATATGGAAGGGCGACAGTTTAATTGCCGGCGTGCCGGAAACTTTGGACATGCTCAGGTCGAAGGGAAAGAGACTTGTGTTCGTGACAAACAATTCAACAAAGTCCCGAAAACAGTATGGGAAGAAATTCGAAACACTTGGTCTTACAGTTGGAGAGGAGGAAATTTTTGCTTCTTCTTTTGCTGCAGCTGCATACTTGGAGTCAATTGATTTCCCTCCAGACAAAAAAGTTTATGTTATTGGGGAGATTGGAATACTGAAGGAACTGGAGCTTGCTGGCTTTAAGTACCTTGGTGGCCCGGAGGATGGTGACAAAAGGATAGAGCTTAAACCCGGGTTCCTTTTGGAGCAAGATAAAGATGTTGGTGCAGTTGTGGTTGGCTTTGATCGATATGTCAACTATTACAAAATTCAGTATGGAACTCTCTGCATACGGGAAAATCCAGGATGTCTTTTCATTGCTACAAACTGTGATGCTGTCACTCATCTCACTGATGCTCAAGAATGGGCAGGTGGTGGTTCTATGGTTGGTGCATTAAGAGGGTCAACTCAGAAAGAACCTATTGTTGTTGGGAAGCCCTCGACATTCATGATGGATTATGTTTCCAAAAAATTTCAGATTAGTAAGTCACAGATATGCATGGTAGGTGATAGATTGGACACTGACATTTTATTTGGTCAAAATGGTGGCTGCAAAACACTTCTTGTCCTTTCAGGTGTCACTACGCTGCCTATGCTTCAAAATCCTGCCAACAGTATTCAGCCAGATTTCTACACAAACAAGGTGTCAGATCTCCTCATCAAGAAGGTTGCAAATGTTTAA___GGATTTCAAAAGATATGATATGTAAGCTGGCTTCAAAGCCTCCCCTCCTCAAGTAGGTTGCAAATGTTTAAAGCTTACAACAATAAGATATGTAAGCTGGCTTTCAGTCTTTCTTTCTTGATATTTGACTGTGTGGCAAAGCTCATTCTCAATACTATTTGAATGTTGCAGACATAAATTGGCTTTCTGGCCATGTCTCTCGTTATTTTTTGTCTTAAAATGACAGAAGCTTTTGAATGCCCAATC

Fln Alignment:

sp_v1.1_unigene490___MLSKGAMVAATVTSTFCFRCYNRQSLHDITLFPS-FNRLKTSQIASSKAGALRVSSSRPISAMANATRNSSGKAAAPLLSDAEELINSVETFIFDCDGVIWKGDSLIAGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVGEEEIXXXXXXXXAYLESIDFPPDKKVYVIGEIGILKELELAGFKYLGGPEDGDKRIELKPGFLLEQDKDVGAVVVGFDRYVNYYKIQYGTLCIRENPGCLFIATNCDAVTHLTDAQEWAGGGSMVGALRGSTQKEPIVVGKPSTFMMDYVSKKFQISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPMLQNPANSIQPDFYTNKVSDLLIKKVANV
A9NVC8_____________MFSKGAMVAATATSALCIRQHNRPSLHNITLSPSSFNRLNTSQVASLKPGALRVSSSRPISAMANAAGNGSGKAAAPVLSDAEELINSVETFIFDCDGVIWKGDSLIAGVPETLDMLRSKGKRLVFVTNNSTKSRKQYGKKFETLGLTVGEEEIFASSFAAAAYLKSIDFPQDKKVYVIGEVGILKELELAGFKYLGGPDDGDRRIELKPGFLLEQDKEVGAVVVGFDRYVNYYKIQYGTLCIRENPGCLFIATNCDAVTHLTDAQEWAGGGSMVGALRGSTQKDPIVVGKPSTFMMDYVSKKFQISKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTTLPMLQNPSNSIQPDFYTNKVSDLLIKKAANV

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
773		33	66		0.997452
788	75		25		0.996473
893	66		16	16	0.988813
902	80		20		0.995493
923		16		83	0.994512
947	16		83		0.994512
1070		87		12	0.992554
1112	40		60		1.0
1160		50		50	1.0
1216		33	66		1.0
1232		66		33	0.997452
1244		66	33		0.997452
1268		66		33	0.997452
1279	33		66		0.997452
1299			33	66	0.997452
1382	25		75		0.996473
1392	30	70			1.0
1393	90		10		0.90298
1397		25	62		1.0
1400		50	50		1.0
1401	87	12			0.992554
1402	50			25	1.0
1403		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain