SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene434

Length: 3322 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene434
CGTCGTGACCTTGGCTGTCACTCACGTTTTCCAGTTGGAATTGAAGATTCTCGATTTCGAATTGCTGCCAGGGAAAGTTTAGTCTTTTTTAGTTACAGTGCCCGCAGGGGGCATANAGAGCTAGGTAGAGATGCGTTATTCATGACTATCATAATGGAAGAGTTTGACCTTGGCAAGGATCATAAATTGTCTTCATTGATGCTGTCTCAAACTACTGAGGAGGTAGCAAGAGCAGCAGTTGCAGCAGCACAAAGTGTTCGTCCTAGTCCTTCGATAGTTGTTTCGGCAAAACAACAGAATAACCATAATTTGCAGAAATGGAAGCGGCAATTGCAAAAAGTTTGGAGATGGGGTCCAAATACAAAGGAACCTGATTGGAAATCATCCTTCAATCCAGAATTATTAACAAGTCAGAAGCGCCAATGGTATGAACTACATTTGCAAGCCCTGAATCGCAAACAGCATACGTCGTGACCTTGGCTGTCACTCAATTTTGTTGTTGTTGGACTTCATTCGAACACCAATGTCGAGGCAACCGAGGCTGCATTTGCTAGAAGGAAGACATGGGAGACAGAAATGGCAAATGCCAATGGAATTGGCGATGTCAAAAAACATCCATACCGAGGTCCTCCTTTGCCTTTGTTGGATCCTCAGATTCTTTTTAAATATCCACCTGGGAAGAGGTTAGCTATGAGGAGCAAGGATCTCCCTCAATTCTGTTTTCCTGGAGGTGTTAAGGCGCGCTTAATGGTAAGGACACCATCAATGAGTGACCTTAATGAGGTTGTATATGGTCAGGAACACTTGAATCGAGATGATTTATCCTTTATCTTCTCACTGAAGGTTGCTGACAATGCTGCATTATATGGAATTTGTGTTTATGTGCAAGAAATTGTTCAAAGACCACCTGGTATCCTTGCCATGAATCTTGGAACATCCGAGCCCTTTTCATCTACTAGCCGGTTCCTCGTTTCAGCACCACGTTGTTATTGCATTCTCACGAAGTTACCCTTTTTTGAACTACATTTCGAAGTATTGAATAGCATTATTGCACAGGAGCGTTTGGAAAGGATAACACAATTCGTCAATGAGATGTCCTTGACAGATTATGTACCTCCTATGGTGAAAGTGCGTGAACGAGCAAATGGGAGGGCTGGCTCTCCCACAAATATTGATCCAGATGATTGGATGTCTAGTGCAATTCCAATTGACACAGTGTTGGGGGCTACTGCAGCTGCAGCAGGTCTTATTTCTGAAAGCAAAGTGAGCTCATTTTCATCACGAGCATCAGAACCCCCATCTCCTGTAAGTGCTGCTATGAGTGAAGTTTCAGAATTCACTCAAGTGAAGGAATGGGATAGAGAACTCAAACAAACTGTAATTGTTGGCGAAGATTATATATCAGAGACTTCAGAAGGGCCTCGTGATAGCTTTGACAAGGTTAATGATTGTGTTGGCGATGGTCAACAGTCATGTGATAGCCGAACACCATCATCAAGTCGTGCAATTGAGCGTATTGGGAGTTCTGAATCCATTTACAGTTCAATCCGTAGCTCAGAAGAAGATGATGTTGATGAGGTTTCTGTTTCTGGGCAAGAAAACAGCTTTGGGACTGAGGGAATAATGAAATGGGCGAAGACCCACAATAATGAGCTTTTGCAGATTATTTGTGGTTACCATTCTCTTCCTCTGGCTCCAAGAGGAACAAATATTGCATTTCAGCCTCTTGAACATTTACCGTCATTGAATTATCACAGACCTGGGGAGTTGGCTCTAAAACTGATGGGTGGAAAGATTTGTCATGCCCCCTCCTGCAAAACAAGCTTGGAAATTGCGGAGACTAATGCTGCATTAGCTGCCGCGGAAGAAGCTTTGGCACTATCCGCATGGACTGTAGCCACAGTTTGCAGGGCTCTCTCCCTTGAAAGTTTGCTGGCTTTACTTGCTGGAACCTTGCTAGAGAAGCAGATAGTTGTTATATGTCCAAATCTGGGGATTCTGTCTTGAGTTGGCTGTCACTTATTCCAATGATTCGCCCATTTGAGTGGCAGAGTTTATTGCTTCCTGTTTTACCAAAAGCAATGCTCGACTTCCTGGAGGCACCTGTTCCTTTTATTGTTGGTATTCAACACAAGAGCAATGAAGTGAGCTCCAAAATTTCAAATACAATTCGTGTGAATGTGTACAAAAATCAGGTAAAGACATGTTCAATACCACATTTGCCTCGTCAGAAAGAGTTGTCTTCAGCATTAGAACCTATTCATGCAAAACTAGCAGCAGATGGTGGCTCAGCTGGGAGACACCCAGTGTATAAGTGTAATGACGTGCAGACAAAGGCTGCAGAAGATTTCCTTGCAGTTCTTAGAAGCTACTTTGAATCGTTTTTCTCAGACTTGCGGTCTCATACTATTACAAATGTACAGTCGAATAATGATAGGGTTTCCCTTCTGCTAAAGGACAGTTTTGTTGATTCTTTTCCCATCAGAGATCAACCATTTATTAAGCTTCTTGTAGACACGCAACTTTTCTCTGTACTGACTGATGCTGCACTTTCAAGCTATGAAACTGACGAAAGATGACGGTTTCTGTACAATTAATTTGGTTTCTGATCCTCCTCTCACAAGTAACAGCATTTTGTTCACTTGTAGTCTATTCTGTGACCGGTGATGAAGAATTTCCTGGTCCCTCATGTTGAGCTGTGTTGCAATATTTCCTAAATTCATTTGTGTATATTGGATTTAGAGATTGCTTCTTTTTTTCAGTCGTAATAGAGGCACTCAATCTGCAGCAGTCACATAATATTGTGACTTGTCTTGCATTGTTAGTGAGGTAATTTTGTTCGCAATAAGGCGTATTTTCATTCAGGGACAGTATTAAGAAATGTGAAGAATCAGCAAAGGCAGCTCTGTACCATCTATGTGTAATCACTGGGTTCTTTCTAATAAGAGTTCCTATTTGATGGCCCAGTTTCATGTCACCAATTTTAATTACTAACAGGATATTTTGTTCTCAGGTGATCTCTTTTATAATTTTCCCTGCATACTGTACTGTAATCAAAATAAAATACCATCAAATGCCAACATTCCCATCCCTTTCTTCACGGGGATCTCAGCGGGGATACCTAATGTAGGGTAGATGTATAGTCAATGTTGTGTGCATAAACTGATTGTTATTTGGATCATTTTTTATGGCCAATGAGCTTGTGCTTGCAAAGCTCTACGTTATAAGTCTCATAATTTTCTCTCCCTCGAGTATCTCAGCTGAAGTCACATTGTTTTCTGGGAACAACTTGACAAAGTCAAAGATCAAGCGCCAGATAAAA

Ace file of the UniGene sp_v1.1_unigene434

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DENN (AEX-3) domain-containing protein [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	49%
Blast2go	protein	-	-	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	DENN	IPR001194	-	0.0	66%
Blast2go	uDENN	IPR005113	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8T4F7

Fln msg: Separated hits, possible frame ERROR between 2001 and 2013,

Fln protein: MTIIMEEFDLGKDHKLSSLMLSQTTEEVARAAVAAAQSVRPSPSIVVSAKQQNNHNLQKWKRQLQKVWRWGPNTKEPDWKSSFNPELLTSQKRQWYELHLQALNRKQHTS*PWLSLNFVVVGLHSNTNVEATEAAFARRKTWETEMANANGIGDVKKHPYRGPPLPLLDPQILFKYPPGKRLAMRSKDLPQFCFPGGVKARLMVRTPSMSDLNEVVYGQEHLNRDDLSFIFSLKVADNAALYGICVYVQEIVQRPPGILAMNLGTSEPFSSTSRFLVSAPRCYCILTKLPFFELHFEVLNSIIAQERLERITQFVNEMSLTDYVPPMVKVRERANGRAGSPTNIDPDDWMSSAIPIDTVLGATAAAAGLISESKVSSFSSRASEPPSPVSAAMSEVSEFTQVKEWDRELKQTVIVGEDYISETSEGPRDSFDKVNDCVGDGQQSCDSRTPSSSRAIERIGSSESIYSSIRSSEEDDVDEVSVSGQENSFGTEGIMKWAKTHNNELLQIICGYHSLPLAPRGTNIAFQPLEHLPSLNYHRPGELALKLMGGKICHAPSCKTSLEIAETNAALAAAEEALALSAWTVATVCRALSLESLLALLAGTLLEKQIVVICPNLGIxxxxxLSLIPMIRPFEWQSLLLPVLPKAMLDFLEAPVPFIVGIQHKSNEVSSKISNTIRVNVYKNQVKTCSIPHLPRQKELSSALEPIHAKLAADGGSAGRHPVYKCNDVQTKAAEDFLAVLRSYFESFFSDLRSHTITNVQSNNDRVSLLLKDSFVDSFPIRDQPFIKLLVDTQLFSVLTDAALSSYETDER*

Protein Length: 814

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTTTTCCAGTTGGAATTGAAGATTCTCGATTTCGAATTGCTGCCAGGGAAAGTTTAGTCTTTTTTAGTTACAGTGCCCGCAGGGGGCATAaAGAGCTAGGTAGAGATGCGTTATTC_-_ATGACTATCATAATGGAAGAGTTTGACCTTGGCAAGGATCATAAATTGTCTTCATTGATGCTGTCTCAAACTACTGAGGAGGTAGCAAGAGCAGCAGTTGCAGCAGCACAAAGTGTTCGTCCTAGTCCTTCGATAGTTGTTTCGGCAAAACAACAGAATAACCATAATTTGCAGAAATGGAAGCGGCAATTGCAAAAAGTTTGGAGATGGGGTCCAAATACAAAGGAACCTGATTGGAAATCATCCTTCAATCCAGAATTATTAACAAGTCAGAAGCGCCAATGGTATGAACTACATTTGCAAGCCCTGAATCGCAAACAGCATACGTCGTGACCTTGGCTGTCACTCAATTTTGTTGTTGTTGGACTTCATTCGAACACCAATGTCGAGGCAACCGAGGCTGCATTTGCTAGAAGGAAGACATGGGAGACAGAAATGGCAAATGCCAATGGAATTGGCGATGTCAAAAAACATCCATACCGAGGTCCTCCTTTGCCTTTGTTGGATCCTCAGATTCTTTTTAAATATCCACCTGGGAAGAGGTTAGCTATGAGGAGCAAGGATCTCCCTCAATTCTGTTTTCCTGGAGGTGTTAAGGCGCGCTTAATGGTAAGGACACCATCAATGAGTGACCTTAATGAGGTTGTATATGGTCAGGAACACTTGAATCGAGATGATTTATCCTTTATCTTCTCACTGAAGGTTGCTGACAATGCTGCATTATATGGAATTTGTGTTTATGTGCAAGAAATTGTTCAAAGACCACCTGGTATCCTTGCCATGAATCTTGGAACATCCGAGCCCTTTTCATCTACTAGCCGGTTCCTCGTTTCAGCACCACGTTGTTATTGCATTCTCACGAAGTTACCCTTTTTTGAACTACATTTCGAAGTATTGAATAGCATTATTGCACAGGAGCGTTTGGAAAGGATAACACAATTCGTCAATGAGATGTCCTTGACAGATTATGTACCTCCTATGGTGAAAGTGCGTGAACGAGCAAATGGGAGGGCTGGCTCTCCCACAAATATTGATCCAGATGATTGGATGTCTAGTGCAATTCCAATTGACACAGTGTTGGGGGCTACTGCAGCTGCAGCAGGTCTTATTTCTGAAAGCAAAGTGAGCTCATTTTCATCACGAGCATCAGAACCCCCATCTCCTGTAAGTGCTGCTATGAGTGAAGTTTCAGAATTCACTCAAGTGAAGGAATGGGATAGAGAACTCAAACAAACTGTAATTGTTGGCGAAGATTATATATCAGAGACTTCAGAAGGGCCTCGTGATAGCTTTGACAAGGTTAATGATTGTGTTGGCGATGGTCAACAGTCATGTGATAGCCGAACACCATCATCAAGTCGTGCAATTGAGCGTATTGGGAGTTCTGAATCCATTTACAGTTCAATCCGTAGCTCAGAAGAAGATGATGTTGATGAGGTTTCTGTTTCTGGGCAAGAAAACAGCTTTGGGACTGAGGGAATAATGAAATGGGCGAAGACCCACAATAATGAGCTTTTGCAGATTATTTGTGGTTACCATTCTCTTCCTCTGGCTCCAAGAGGAACAAATATTGCATTTCAGCCTCTTGAACATTTACCGTCATTGAATTATCACAGACCTGGGGAGTTGGCTCTAAAACTGATGGGTGGAAAGATTTGTCATGCCCCCTCCTGCAAAACAAGCTTGGAAATTGCGGAGACTAATGCTGCATTAGCTGCCGCGGAAGAAGCTTTGGCACTATCCGCATGGACTGTAGCCACAGTTTGCAGGGCTCTCTCCCTTGAAAGTTTGCTGGCTTTACTTGCTGGAACCTTGCTAGAGAAGCAGATAGTTGTTATATGTCCAAATCTGGGGATTCTxxxxxxxxxxxxGCTGTCACTTATTCCAATGATTCGCCCATTTGAGTGGCAGAGTTTATTGCTTCCTGTTTTACCAAAAGCAATGCTCGACTTCCTGGAGGCACCTGTTCCTTTTATTGTTGGTATTCAACACAAGAGCAATGAAGTGAGCTCCAAAATTTCAAATACAATTCGTGTGAATGTGTACAAAAATCAGGTAAAGACATGTTCAATACCACATTTGCCTCGTCAGAAAGAGTTGTCTTCAGCATTAGAACCTATTCATGCAAAACTAGCAGCAGATGGTGGCTCAGCTGGGAGACACCCAGTGTATAAGTGTAATGACGTGCAGACAAAGGCTGCAGAAGATTTCCTTGCAGTTCTTAGAAGCTACTTTGAATCGTTTTTCTCAGACTTGCGGTCTCATACTATTACAAATGTACAGTCGAATAATGATAGGGTTTCCCTTCTGCTAAAGGACAGTTTTGTTGATTCTTTTCCCATCAGAGATCAACCATTTATTAAGCTTCTTGTAGACACGCAACTTTTCTCTGTACTGACTGATGCTGCACTTTCAAGCTATGAAACTGACGAAAGATGA___CGGTTTCTGTACAATTAATTTGGTTTCTGATCCTCCTCTCACAAGTAACAGCATTTTGTTCACTTGTAGTCTATTCTGTGACCGGTGATGAAGAATTTCCTGGTCCCTCATGTTGAGCTGTGTTGCAATATTTCCTAAATTCATTTGTGTATATTGGATTTAGAGATTGCTTCTTTTTTTCAGTCGTAATAGAGGCACTCAATCTGCAGCAGTCACATAATATTGTGACTTGTCTTGCATTGTTAGTGAGGTAATTTTGTTCGCAATAAGGCGTATTTTCATTCAGGGACAGTATTAAGAAATGTGAAGAATCAGCAAAGGCAGCTCTGTACCATCTATGTGTAATCACTGGGTTCTTTCTAATAAGAGTTCCTATTTGATGGCCCAGTTTCATGTCACCAATTTTAATTACTAACAGGATATTTTGTTCTCAGGTGATCTCTTTTATAATTTTCCCTGCATACTGTACTGTAATCAAAATAAAATACCATCAAATGCCAACATTCCCATCCCTTTCTTCACGGGGATCTCAGCGGGGATACCTAATGTAGGGTAGATGTATAGTCAATGTTGTGTGCATAAACTGATTGTTATTTGGATCATTTTTTATGGCCAATGAGCTTGTGCTTGCAAAGCTCTACGTTATAAGTCTCATAATTTTCTCTCCCTCGAGTATCTCAGCTGAAGTCACATTGTTTTCTGGGAACAACTTGACAAAGTCAAAGATCAAGCGCCAGATAAAA

Fln Alignment:

sp_v1.1_unigene434___SIVVSAKQ--------QNNHNLQKWKRQLQKVWRWGPNTKEPDWKSSFNPELLTSQKRQWYELHLQALNRKQHTS*PWLSLNFVVVGLHSNTNVEATEAAFARRKTWETEMANANGIGDVKKHPYRGPPLPLLDPQILFKYPPGKRLAMRSKDLPQFCFPGGVKARLMVRTPSMSDLNEVVYGQEHLNRDDLSFIFSLKVADNAALYGICVYVQEIVQRPPGILAMNLGTSEPFSSTSRFLVSAPRCYCILTKLPFFELHFEVLNSIIAQERLERITQFVNEMSLTDYVPPMVKVRERANGRAGSPTNIDPDDWMSSAIPIDTVLGXXXXXXGLISESKVXXXXXXXXXXXXXVSAAMSEVSEFTQVKEWDRELKQTVIVGEDYI----------SETSEGP--------RDSFDKVNDCVGDGQQSCDSRTPSSSRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQENSFGTEGIMKWAKTHNNELLQIICGYHSLPLAPRGTNIAFQPLEHLPSLNYHRPGELALKLMGGKICHAPSCKTSXXXXXXXXXXXXXXXXXXXXXWTVATVCRXXXXXXXXXXXXXXXXXKQIVVICPNLGILxxxxLSLIPMIRPFEWQSLLLPVLPKAMLDFLEAPVPFIVGIQHKSNEVSSKISNTIRVNVYKNQVKTCSIPHLPRQKELSSALEPIHAKLAADGGSAGRHPVYKCNDVQTKAAEDFLAVLRSYFESFFSDLRSHTITNVQSNNDRVSLLLKDSFVDSFPIRDQPFIKLLVDTQLFSVLTDAALSSY
D8T4F7_____________SIVVSSRHPIDSSSAFQNNNSFNKWRRQLQKVWKWGLYPREGGKKSSFNPELLTKQKRQWIELQLQALEKKQKKEPTSIFEHFVVVGLHPETNVEVVEAAFAKKKAWERNVEKAERLSEADRQ-YRGAPAPTLEPQVLFKYPPGKRLPLRSKDLPSFCFPSGVEAKVVERTPSMSDLNEVVYGQDHQVRDDLSFVFVLKVADNATLYGICIFVREIVQRAPGFFSVNTPLSSSRLTRSRFLVSAPRCYCILTKLPFFHLHFEVLQSIIAQERLDRINQCVSEMKISDYVPPLVKLGSKANGKANSPRDDDEDGWMESAIPVEDVLGATAAAAGLISESEMNSFSSLKHSSFSERDTESGESAEICATAESRESNGHMVEQNESELQASSPDDVLASSTVDTPPSHRGHERAESSDSIYSVVESCTQSLDSDEENCETS--------------------------GLGQDD-IGVDSVFKWAEENNCDALRIICMYYQLPVPPRGSPVFFRPLDHLQPLNFVRPREATDDPDGS--------KSGLELAEAHETAAAEEEAILLSLWTVSTVCRSLSLDTILSMVAGALLERQMVVVCPNVGILxxxxLSIIPMLRPFQWQSLLLPVLPYKMLDFLDAPVPFVVGVQHKSSEVRSKISNLMRVNVYKNQVTVSYLPQLPRQRELVAALETYHSELAAVDFKAKRHPVHEYTESQAQAADGFLRTLRSYLESLCADVRAHTITNVQSNNDRVSLLLKESFIDSFPSRDRPFIKLFADTQLFSVHTDAVLSSF

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
1494	75			25	0.996473
2001		50		50	1.0
2002	50		50		1.0
2005			50	50	1.0
2007		50	50		1.0
2010		50	50		1.0
2016		75		25	0.996473
2153		87		12	0.992554
2288		50		50	1.0
2294	50		50		1.0
2297	42			57	1.0
2330		11	88		0.923564
2331		88	11		0.923564
2332	88			11	0.923564
2336	88	11			0.923564
2337	88			11	0.923564
2338	88			11	0.923564
2348	88	11			0.923564
2349	88			11	0.923564
2350		12	87		0.992554
2357			12	87	0.992554
2359		12	87		0.992554
2360		87	12		0.992554
2361	87			12	0.992554
2363	12			87	0.992554
2364		12		87	0.992554
2371	90			10	0.90298
2372		10	90		0.90298
2373		90		10	0.90298
2374		10		90	0.90298
2375	90			10	0.90298
2376		90	10		0.90298
2378		10		90	0.90298
2379		10		90	0.90298
2380	10		90		0.90298
2381	90			10	0.90298
2382	90	10			0.90298
2383	10			90	0.90298
2385			90	10	0.90298
2386		10		90	0.90298
2387	10			90	0.90298
2523	14		85		0.999981
2535			14	85	0.999981
2577	87			12	0.999964
2578	87	12			0.999964
2585		12	87		0.999964
2586			87	12	0.999964
2588			13	86	0.999973
2589			13	86	0.999973
2597	86			13	0.999973
2598		13		86	0.999973
2599	13			86	0.999973
2755		12		75	0.975346
2756		50		37	1.0
2765	83			16	0.994512
2959	14			85	0.993533
2962			85	14	0.993533
2965	16		16		0.988813
2967	16		83		0.994512
2968	16	83			0.994512
2969	16	83			0.994512
2970	16	83			0.994512
2972		20	80		0.995493
2973		20		80	0.995493
2974		20		80	0.995493
3102	33			66	1.0
3109	33		66		1.0
3186	66			33	0.997452
3196			66	33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
494	505	TTG TTG TTG TTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain