SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene409

Length: 2698 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene409
GAGGAGGCTGGAGACGAGTGTCTGGCCTGGCCTCTCTGGATAGCAGGGTACCCACTTGGGACGTACCTATTTCAGGTTTCTGGAGCTAGCAGAAGAAAAACTCATCTGGGTCTTCGTTGTCAGGTAGTATACATACCGAGAAAGAGGTCGAAAGCCTCATATAGGCAAGGGTCCCTGTTCTGTTGCAGTAAGTTTACAGAGGGCTTGCTTTTCATGGGTTCTTGTATCTGAGACAGTTTAAGGAGGGAATCGATTTGGGTCTCTGTTTTGAGCGCTGCATATAGTATTGAGAAGACGACCAAGGGCTTTAACATCATAAAACCATTGGGGTCAGAGTTAGCATAAGGTCCAGGGCGGGGTTTTGTATCAGAGAATGCGTTTGGGATCCTTGTTGCTGGGGCTGTAGAGGCTTGAGAAGGAGCTTTGAGGATTTCTGTTGCAGCCAAGCTATTTGAGTTCTTGTAGGGCTTATTGGGCTAAGCTTAGAAGGAAAACTGAGAAGAGGCAGTGGTTTTGAAGCGGGTCATTTTTTGAATTTGTGCGAGACCATGGATGTGAGAGCGCTTTATAAGGCCTGAGGGATGGGACTGGGGCCGGGTGTTGTACAGGTAGAGGCTTGGGAGCAGGTGGGCAATTCCAGTCGGGTTGGACGCCGGAGAAAGAAGGATGAAGCCGAGGCGCGGGGATGCTGGCATGGTCTGAACTTTGGGCTCATGAGCAGCTGCATCTCCTCCAGATCCAAAGTAGATAACTCCATAAGCAGCCCTGCTATCCATTCTGCTGAAACTAAATCTCCAAATGATAGTGGCAAAGAGCCGCCTGCTGCTCAGACAGTGTCTTCCACAAGTACTAGTAATACAGGAAGCAATCCATCCACTCCCAAAGTAGGAGATGATTTGAAAGTTGCATCCCAGTTGCGCAAATTCACTTTTAATGATTTGAAGTATGCAACCAGAAACTTCAGGCCAGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTTTTCAAAGGTTGGATAGAAGAGAATGGCACTGCTCCTGTCAAGCCTGGTACTGGTCTCACTGTAGCTGTAAAAACACTCAACCATGATGGGCTGCAAGGTCACAAGGAATGGCTGGCAGAAGTCAATTTTCTTGGGGACCTTATCCATCCTAATCTGGTTAAACTTATTGGGTATTGCATAGAAGATGATCAGAGGCTACTTGTGTATGAGTTTATGCCTCGAGGTAGCCTGGAGAATCATCTCTTCAGAAGGTCCCTGCCCCTGCCATGGTCTATCAGGATGAAAATTGCATTGGGTGCAGCCAAAGGCCTGGCATATCTCCATGGAGGAGCTGAAAGACCTGTGATTTATCGGGATTTTAAGACGTCCAACATCCTGTTGGATTCGGAATACAATGCCAAACTTTCTGACTTTGGTCTAGCAAAAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGTTATGCTGCTCCAGAATATGTAATGACTGGACACTTGACATCTAAGAGCGATGTCTACAGTTTTGGTGTTGTGTTACTTGAATTGCTAACTGGTCGAAGATCTATGGATAAAAACCGGCCAAGTGGGGAACATAATCTGGTGGCATGGGCTCGGCCTTATCTTATGGACAAAAGAAAGCTGTATCGTCTTGTGGACCCTCGGTTGGAATTTAACTATTCTGTCAAAGGGGCACAAAGGGCTGCTCAGATAGCACATCATTGCCTAAGTCGGGATCCTAAAGCCAGGCCTCTTATGGATGATGTTATTGAAGCTCTTACACCTTTGTTAAATTTGAAGGACATGGCAAGCTCGTCCTTGCATCATCAAGCTGTACAGTCTATGCGCCTAAGTCGCCACCAACGCGTGACAAATGGAAATGGACAGTTACCTTCAAAGAATGGACCTCCAAGAGCCATTAGCAAGGATGCTTGTATGCCACCACATAGCCAATCTCCAAAGCATAATGGTAAATGATATTGTTGACCGAAGCGGCTTTCGATTGTTTCCTGAATTTATATGTGAATGGAGCTTCCAAGTCTTACTTACAATTTACCAAAATACATCTGAGGGAACGTTTTTGCACTTAGATTAGATGCTCATGACTTGGACATCTGAAGATGTGCTCTTCTGAGGGCAAATTCAGTTTATGCTGACGATCAGATAGTCTGGGTCTTTAGAAAAACAAATGTGTACCTAAGTTCTCAGATGGTTATACAGAGAAGAATGCAGATTCGTTATCTTTAAATGGGACAGCCATTGAGATATGTTGAGTCATTGCTTTGAGAAGGAGATCGATTTCGCGAGGCAAATCTACTTAGGGTGACTCCTTTCAGGTTTATTGGGTGGATTGGGTGCTTTGAGACAGTAGTTGGTGGATATCTGTACAGCTATCAGATGTCAGTTTTTTCTGATTGAAGATTCCTAGATGTTATACTCTCATTGTTTCAAATTACTTTGCGCCCAATCTTAATCATGGTTATTTTCGTAGTTTGTCCTGATTCTGTTGATTCTTGAATATCTTGACAGAATGCTTCACTGGAATTTGTCACAATGTACTATATACATATGTAGGATAACCAAACTTTTTGTTGGAAAGGAATATTTAGTACGTGATTTGTTTTCCAATTTATTATATTCAGAGAGGTGGGGCTTAGATTGGCCTCTTTAGTTCT

Ace file of the UniGene sp_v1.1_unigene409

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.11.25)	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	80%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	80%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	80%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	80%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	80%
Blast2go	Protein kinase-like domain	IPR011009	-	80%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	80%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT7

Fln msg:

Fln protein: MGLGPGVVQVEAWEQVGNSSRVGRRRKKDEAEARGCWHGLNFGLMSSCISSRSKVDNSISSPAIHSAETKSPNDSGKEPPAAQTVSSTSTSNTGSNPSTPKVGDDLKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLELLTGRRSMDKNRPSGEHNLVAWARPYLMDKRKLYRLVDPRLEFNYSVKGAQRAAQIAHHCLSRDPKARPLMDDVIEALTPLLNLKDMASSSLHHQAVQSMRLSRHQRVTNGNGQLPSKNGPPRAISKDACMPPHSQSPKHNGK*

Protein Length: 474

Fln nts: GAGGAGGCTGGAGACGAGTGTCTGGCCTGGCCTCTCTGGATAGCAGGGTACCCACTTGGGACGTACCTATTTCAGGTTTCTGGAGCTAGCAGAAGAAAAACTCATCTGGGTCTTCGTTGTCAGGTAGTATACATACCGAGAAAGAGGTCGAAAGCCTCATATAGGCAAGGGTCCCTGTTCTGTTGCAGTAAGTTTACAGAGGGCTTGCTTTTCATGGGTTCTTGTATCTGAGACAGTTTAAGGAGGGAATCGATTTGGGTCTCTGTTTTGAGCGCTGCATATAGTATTGAGAAGACGACCAAGGGCTTTAACATCATAAAACCATTGGGGTCAGAGTTAGCATAAGGTCCAGGGCGGGGTTTTGTATCAGAGAATGCGTTTGGGATCCTTGTTGCTGGGGCTGTAGAGGCTTGAGAAGGAGCTTTGAGGATTTCTGTTGCAGCCAAGCTATTTGAGTTCTTGTAGGGCTTATTGGGCTAAGCTTAGAAGGAAAACTGAGAAGAGGCAGTGGTTTTGAAGCGGGTCATTTTTTGAATTTGTGCGAGACCATGGATGTGAGAGCGCTTTATAAGGCCTGAGGG_-_ATGGGACTGGGGCCGGGTGTTGTACAGGTAGAGGCTTGGGAGCAGGTGGGCAATTCCAGTCGGGTTGGACGCCGGAGAAAGAAGGATGAAGCCGAGGCGCGGGGATGCTGGCATGGTCTGAACTTTGGGCTCATGAGCAGCTGCATCTCCTCCAGATCCAAAGTAGATAACTCCATAAGCAGCCCTGCTATCCATTCTGCTGAAACTAAATCTCCAAATGATAGTGGCAAAGAGCCGCCTGCTGCTCAGACAGTGTCTTCCACAAGTACTAGTAATACAGGAAGCAATCCATCCACTCCCAAAGTAGGAGATGATTTGAAAGTTGCATCCCAGTTGCGCAAATTCACTTTTAATGATTTGAAGTATGCAACCAGAAACTTCAGGCCAGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTTTTCAAAGGTTGGATAGAAGAGAATGGCACTGCTCCTGTCAAGCCTGGTACTGGTCTCACTGTAGCTGTAAAAACACTCAACCATGATGGGCTGCAAGGTCACAAGGAATGGCTGGCAGAAGTCAATTTTCTTGGGGACCTTATCCATCCTAATCTGGTTAAACTTATTGGGTATTGCATAGAAGATGATCAGAGGCTACTTGTGTATGAGTTTATGCCTCGAGGTAGCCTGGAGAATCATCTCTTCAGAAGGTCCCTGCCCCTGCCATGGTCTATCAGGATGAAAATTGCATTGGGTGCAGCCAAAGGCCTGGCATATCTCCATGGAGGAGCTGAAAGACCTGTGATTTATCGGGATTTTAAGACGTCCAACATCCTGTTGGATTCGGAATACAATGCCAAACTTTCTGACTTTGGTCTAGCAAAAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGTTATGCTGCTCCAGAATATGTAATGACTGGACACTTGACATCTAAGAGCGATGTCTACAGTTTTGGTGTTGTGTTACTTGAATTGCTAACTGGTCGAAGATCTATGGATAAAAACCGGCCAAGTGGGGAACATAATCTGGTGGCATGGGCTCGGCCTTATCTTATGGACAAAAGAAAGCTGTATCGTCTTGTGGACCCTCGGTTGGAATTTAACTATTCTGTCAAAGGGGCACAAAGGGCTGCTCAGATAGCACATCATTGCCTAAGTCGGGATCCTAAAGCCAGGCCTCTTATGGATGATGTTATTGAAGCTCTTACACCTTTGTTAAATTTGAAGGACATGGCAAGCTCGTCCTTGCATCATCAAGCTGTACAGTCTATGCGCCTAAGTCGCCACCAACGCGTGACAAATGGAAATGGACAGTTACCTTCAAAGAATGGACCTCCAAGAGCCATTAGCAAGGATGCTTGTATGCCACCACATAGCCAATCTCCAAAGCATAATGGTAAATGA___TATTGTTGACCGAAGCGGCTTTCGATTGTTTCCTGAATTTATATGTGAATGGAGCTTCCAAGTCTTACTTACAATTTACCAAAATACATCTGAGGGAACGTTTTTGCACTTAGATTAGATGCTCATGACTTGGACATCTGAAGATGTGCTCTTCTGAGGGCAAATTCAGTTTATGCTGACGATCAGATAGTCTGGGTCTTTAGAAAAACAAATGTGTACCTAAGTTCTCAGATGGTTATACAGAGAAGAATGCAGATTCGTTATCTTTAAATGGGACAGCCATTGAGATATGTTGAGTCATTGCTTTGAGAAGGAGATCGATTTCGCGAGGCAAATCTACTTAGGGTGACTCCTTTCAGGTTTATTGGGTGGATTGGGTGCTTTGAGACAGTAGTTGGTGGATATCTGTACAGCTATCAGATGTCAGTTTTTTCTGATTGAAGATTCCTAGATGTTATACTCTCATTGTTTCAAATTACTTTGCGCCCAATCTTAATCATGGTTATTTTCGTAGTTTGTCCTGATTCTGTTGATTCTTGAATATCTTGACAGAATGCTTCACTGGAATTTGTCACAATGTACTATATACATATGTAGGATAACCAAACTTTTTGTTGGAAAGGAATATTTAGTACGTGATTTGTTTTCCAATTTATTATATTCAGAGAGGTGGGGCTTAGATTGGCCTCTTTAGTTCT

Fln Alignment:

sp_v1.1_unigene409___MGLGPGVVQVEAWEQVGNSSRVGRRRKKDEAEARGCWHGLNFGLMSSCISSRSKVDNSISSPAIHSAETKSPNDSGKEPPAAQTVXXXXXXXXXXXXXXXKVGDDLKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLELLTGRRSMDKNRPSGEHNLVAWARPYLMDKRKLYRLVDPRLEFNYSVKGAQRAAQIAHHCLSRDPKARPLMDDVIEALTPLLNLKDMASSSLHHQAVQSMRLSRHQRVTNG----------NGQLPSKNGPPRAISKDACMPPHSQSPKHNGK
B8LRT7_____________MGLGPGVVQVEAWEQVGNSSRVGGRRKKDEAEARGCWHGLNFGLMSSCISSRSKVDNSISSTAIHSAETKSPNDSSKEPPAAQTVSSTSTSNTGSNPSTPKVGDELKVASQLRKFTFNDLKYATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKSRPSGEHNLVEWARPYLGEKRRLYRLIDPRLDGNFSIKGAQKAAQLACHCLSRDPKARPLMSEVVEALRPLLNLKDMASSSFHYQALQAERSSRQQQLANGNGQLKNVAYLNGQLSSKNGRPRVITNISHASPYRQSPRQNGK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
2107	20			80	0.995493
2108			20	80	0.995493
2153	20		80		0.995493
2240		14	85		0.993533
2241	14			85	0.993533
2242		14		85	0.993533
2245	85		14		0.993533
2246		85	14		0.993533
2247	85		14		0.993533
2250	28		71		1.0
2291			83	16	0.994512
2293		16	83		0.994512
2296	83		16		0.994512
2297			16	83	0.994512
2328	16			83	0.994512
2330			16	83	0.994512
2331		83	16		0.994512
2359	12	75	12		0.975346
2360			12	87	0.992554
2362			12	87	0.992554
2363			12	87	0.992554
2367		12	87		0.992554
2369		12		87	0.992554
2370	12			87	0.992554
2573	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain