SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene396

Length: 2540 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene396
CGTCGTGACCTTGGCTGTCACTCGATGATTTAAGTGGAGTTCAAGAAAATCGTATCCCCAACCCGCATCTTGGTGCCTACATCAATCTGTTTATATCAACCAATCGTCACGACAAATTGGGGAAGAAAGGTCGTTCAAATGTGGCATGGTATATTCTCTGTGCATAATCTTCGTGTCTGGATTTTTTCCGGCCCAAGCAGATCATGGAGACTTGTTGTTAAACCATGATTAATTGACTTGATGGGTGTTTTCCAGTCTGAAATTTTGTGGAGGACTAGAACCAGTTTTTAATAGTTTGTTTTGGCGGATGAACTTTATCCTTCTGAAAGTTTTTGAGAACAAAAGGAATTAGCGGTTGTTTATGAAGAAGAGGCTCCATGACGGAGACTGGTGGCAATTCTCTTCCATCCGGACCGGATGGAATGAAGAGGAAAGTGGCATATTTTTATGACCCAGAGGTGGGGAATTATTACTATGGACAAGGGCATCCGATGAAGCCTCACCGCATAAGAATGACTCATGCCCTCCTTGTTCAGTATGGTTTGCATAAAGAAATGCAGATTCTTAAGCCCTACCCTGCGAGAGATAGAGATCTCTGCCGTTTCCATGCAGATGACTATGTAGCATTTTTACGAGGAATAACTCCGGAGACAATACAGGATCAAGTTAAGGCGTTGAAACGGTTTAATGTTGGGGATGATTGCCCGGTTTTTGATGGCTTGTACCAATACTGTCAAACTTATGCTGGTGGGTCTGTCGGAGGTGCTGTGAAACTCAATCATAAACTCTGTGACATTGCAATTAATTGGGCTGGGGGTCTTCATCATGCTAAAAAATGTGAGGCATCCGGATTTTGCTATGTGAATGACATTGTGCTGGCCATTCTGGAGCTCTTGAAATATCATAAGCGTGTTTTGTATGTTGATATTGACATTCACCATGGTGATGGAGTTGAGGAGGCTTTCTACACAACGGATAGGGTTATGACAGTATCATTTCACAAATTTGGGGACTATTTCCCAGGGACAGGTGACATTAGAGACATCGGGTGCGGGAAAGGGAAATATTATGCTGTAAATGTCCCTTTAGATGATGGAATTGATGATGAAAGTTTTCAGTCTCTGTTTAAACCTATTATTCAACAAGTGATGTTGGTTTACAATCCTGAGGCAATTGTTCTCCAGTGTGGAGCTGATTCTTTGTCTGGAGACAGGCTAGGTTGCTTTAACCTTTCTGTGAAAGGGCATGCAGAGTGTGTTCGATACATGAGGTCATTCAATGTGCCACTTCTGATGGTCGGTGGTGGTGGGTACACAGTTCGTAATGTTGCTCGTTGTTGGTGCTACGAGACAGGGGTTGCTGTTGGTGTGGAGATTGATGACAAAATGCCTCAACATGAATACTACGAATATTTTGGACCAGATTACACTGTTCATGTGGCTCCAAGTAATATGGAAAATAAGAACACGAAGCAGTATCTGGATAAAATTAGGTCCAAAATACTTGAAAACATTAATTCATTGCCATGTGCACCAAGTGCTCAATTCCAAGTGCAGCCTCCAGATACTGATTTCCCTGAACTGGAAGAAGAAGATTATGATGAACGTATTAGAAGTCATAAATGGGATGGAGCAAGTTGTGATTCTGATTCAGAGAATGGCGATTTAAAGCATCGTAATCATGATGTTGAGGAAAGTGCATTCCCACGGCATAATCTGGCGAATAATAGTTACAACACCAAGATTAAGCTAGAAGGTGTTGGTACAGGTGGTCTTGACATGGCTGCTGGAACAGACACAAAAAAGAATGACGAGTCCTCTGAAGCCATGGACTATGAAAGTGGAGAAGAGTTACGACAGGATCATTTTGCTTCTCCAATAAATGCTTCTCAGCCATATGATCCCGCTCTTTTGACAGGAGCTCAAAATCAGTTGCAGTCAACAGATACTGTAAAGCCCATAGAACAAGGTGGCAATGCTCCAGGAATACCACCACCTTCAGTTGCAACTGTAAGCACCGGCACTCGCCCGAGTTCATTTAGCCGGACATCATCTTTGAATTCCATGTCTTCAGCAAAGCAGGGTTCCATTTTGGGACCAAATCCTCTTCAAGGGCTGAATGCATCTGGTCTACAATTTCCAGTTCCAACTTCTGATTCACCTATAAGGCAAGGTGGGTCTTATTCTATAACTGTACAGGCCCCAGATAAGCAAGGTTTGCAAAATCATATGAAGGGACCTCAAAATATGCCAGGGAATTCTTGAAAATTATATATCCTTCTGCAATTTGAAACACAGGTTACTTTGTATAATGATAATGTAATGTCATCCCCTTGGTCACAATGTGCTTGTGATCAGTTTAGAAGCTAATTATACACTTAGAATGCTAATTGGTGATGTACTAAAACTTCTCTGTACTTTATTCTACTGTACTGTATTCGGAGATGCTGAAAATTTACTAAAACAAATGGAATATCAACAACCTAGGATCATTATGTCATATGACACCAGTTTAGAAGCTAATTATACACTTGGAATGCC

Ace file of the UniGene sp_v1.1_unigene396

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	HDA902; histone deacetylase; K06067 histone deacetylase 1/2 [EC:3.5.1.98]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	histone deacetylase	-	-	84%

Source	ECs	Term	Type	e value	Identity
AutoFact	Histone deacetylase.	EC:3.5.1.98	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	84%
Blast2go	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	84%
Blast2go		GO:0016481	Biological Process	84%
Blast2go	histone acetylation	GO:0016573	Biological Process	84%
Blast2go	histone deacetylase activity	GO:0004407	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	Histone deacetylase superfamily	IPR000286	-	84%
Blast2go	Histone deacetylase	IPR003084	-	84%
Blast2go	Histone deacetylase domain	IPR023801	-	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A979

Fln msg: your sequence is longer than subject: 629 - 145

Fln protein: MTETGGNSLPSGPDGMKRKVAYFYDPEVGNYYYGQGHPMKPHRIRMTHALLVQYGLHKEMQILKPYPARDRDLCRFHADDYVAFLRGITPETIQDQVKALKRFNVGDDCPVFDGLYQYCQTYAGGSVGGAVKLNHKLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHKRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGCGKGKYYAVNVPLDDGIDDESFQSLFKPIIQQVMLVYNPEAIVLQCGADSLSGDRLGCFNLSVKGHAECVRYMRSFNVPLLMVGGGGYTVRNVARCWCYETGVAVGVEIDDKMPQHEYYEYFGPDYTVHVAPSNMENKNTKQYLDKIRSKILENINSLPCAPSAQFQVQPPDTDFPELEEEDYDERIRSHKWDGASCDSDSENGDLKHRNHDVEESAFPRHNLANNSYNTKIKLEGVGTGGLDMAAGTDTKKNDESSEAMDYESGEELRQDHFASPINASQPYDPALLTGAQNQLQSTDTVKPIEQGGNAPGIPPPSVATVSTGTRPSSFSRTSSLNSMSSAKQGSILGPNPLQGLNASGLQFPVPTSDSPIRQGGSYSITVQAPDKQGLQNHMKGPQNMPGNS*

Protein Length: 630

Fln nts: CGTCGTGACCTTGGCTGTCACTCGATGATTTAAGTGGAGTTCAAGAAAATCGTATCCCCAACCCGCATCTTGGTGCCTACATCAATCTGTTTATATCAACCAATCGTCACGACAAATTGGGGAAGAAAGGTCGTTCAAATGTGGCATGGTATATTCTCTGTGCATAATCTTCGTGTCTGGATTTTTTCCGGCCCAAGCAGATCATGGAGACTTGTTGTTAAACCATGATTAATTGACTTGATGGGTGTTTTCCAGTCTGAAATTTTGTGGAGGACTAGAACCAGTTTTTAATAGTTTGTTTTGGCGGATGAACTTTATCCTTCTGAAAGTTTTTGAGAACAAAAGGAATTAGCGGTTGTTTATGAAGAAGAGGCTCC_-_ATGACGGAGACTGGTGGCAATTCTCTTCCATCCGGACCGGATGGAATGAAGAGGAAAGTGGCATATTTTTATGACCCAGAGGTGGGGAATTATTACTATGGACAAGGGCATCCGATGAAGCCTCACCGCATAAGAATGACTCATGCCCTCCTTGTTCAGTATGGTTTGCATAAAGAAATGCAGATTCTTAAGCCCTACCCTGCGAGAGATAGAGATCTCTGCCGTTTCCATGCAGATGACTATGTAGCATTTTTACGAGGAATAACTCCGGAGACAATACAGGATCAAGTTAAGGCGTTGAAACGGTTTAATGTTGGGGATGATTGCCCGGTTTTTGATGGCTTGTACCAATACTGTCAAACTTATGCTGGTGGGTCTGTCGGAGGTGCTGTGAAACTCAATCATAAACTCTGTGACATTGCAATTAATTGGGCTGGGGGTCTTCATCATGCTAAAAAATGTGAGGCATCCGGATTTTGCTATGTGAATGACATTGTGCTGGCCATTCTGGAGCTCTTGAAATATCATAAGCGTGTTTTGTATGTTGATATTGACATTCACCATGGTGATGGAGTTGAGGAGGCTTTCTACACAACGGATAGGGTTATGACAGTATCATTTCACAAATTTGGGGACTATTTCCCAGGGACAGGTGACATTAGAGACATCGGGTGCGGGAAAGGGAAATATTATGCTGTAAATGTCCCTTTAGATGATGGAATTGATGATGAAAGTTTTCAGTCTCTGTTTAAACCTATTATTCAACAAGTGATGTTGGTTTACAATCCTGAGGCAATTGTTCTCCAGTGTGGAGCTGATTCTTTGTCTGGAGACAGGCTAGGTTGCTTTAACCTTTCTGTGAAAGGGCATGCAGAGTGTGTTCGATACATGAGGTCATTCAATGTGCCACTTCTGATGGTCGGTGGTGGTGGGTACACAGTTCGTAATGTTGCTCGTTGTTGGTGCTACGAGACAGGGGTTGCTGTTGGTGTGGAGATTGATGACAAAATGCCTCAACATGAATACTACGAATATTTTGGACCAGATTACACTGTTCATGTGGCTCCAAGTAATATGGAAAATAAGAACACGAAGCAGTATCTGGATAAAATTAGGTCCAAAATACTTGAAAACATTAATTCATTGCCATGTGCACCAAGTGCTCAATTCCAAGTGCAGCCTCCAGATACTGATTTCCCTGAACTGGAAGAAGAAGATTATGATGAACGTATTAGAAGTCATAAATGGGATGGAGCAAGTTGTGATTCTGATTCAGAGAATGGCGATTTAAAGCATCGTAATCATGATGTTGAGGAAAGTGCATTCCCACGGCATAATCTGGCGAATAATAGTTACAACACCAAGATTAAGCTAGAAGGTGTTGGTACAGGTGGTCTTGACATGGCTGCTGGAACAGACACAAAAAAGAATGACGAGTCCTCTGAAGCCATGGACTATGAAAGTGGAGAAGAGTTACGACAGGATCATTTTGCTTCTCCAATAAATGCTTCTCAGCCATATGATCCCGCTCTTTTGACAGGAGCTCAAAATCAGTTGCAGTCAACAGATACTGTAAAGCCCATAGAACAAGGTGGCAATGCTCCAGGAATACCACCACCTTCAGTTGCAACTGTAAGCACCGGCACTCGCCCGAGTTCATTTAGCCGGACATCATCTTTGAATTCCATGTCTTCAGCAAAGCAGGGTTCCATTTTGGGACCAAATCCTCTTCAAGGGCTGAATGCATCTGGTCTACAATTTCCAGTTCCAACTTCTGATTCACCTATAAGGCAAGGTGGGTCTTATTCTATAACTGTACAGGCCCCAGATAAGCAAGGTTTGCAAAATCATATGAAGGGACCTCAAAATATGCCAGGGAATTCTTGA___AAATTATATATCCTTCTGCAATTTGAAACACAGGTTACTTTGTATAATGATAATGTAATGTCATCCCCTTGGTCACAATGTGCTTGTGATCAGTTTAGAAGCTAATTATACACTTAGAATGCTAATTGGTGATGTACTAAAACTTCTCTGTACTTTATTCTACTGTACTGTATTCGGAGATGCTGAAAATTTACTAAAACAAATGGAATATCAACAACCTAGGATCATTATGTCATATGACACCAGTTTAGAAGCTAATTATACACTTGGAATGCC

Fln Alignment:

sp_v1.1_unigene396___MDYESGEELRQDHFASPINASQPYDPALLTGAQNQLQSTDTVKPIEQGGNAPGIPPPSVATVSTGTRPSSFSRTSSLNSMSSAKQGSILGPNPLQGLNASGLQFPVPTSDSPIRQGGSYSITVQAPDKQGLQNHMKGPQNMPGNS
D5A979_____________MDYESGEELRQDHFASPINASQACDPHLSTGVQNQLQPTNTIKPIEQGDNTPGIPPPSIATVSTSTRPTSISRTSSLNSMSSARQGSISGPNPLQGPNASGLQFPVPTSNSPTRQGGPYSITVQAPDKQGLQNHIKGPQNTPGNS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
908	90		10		0.90298
911		88		11	0.923564
913	11			88	0.923564
915	11			88	0.923564
916			11	88	0.923564
923		11	88		0.923564
1024	83		16		0.994512
1594	90		10		0.999898
1723		14	85		0.999981
1938	90			10	0.90298
1950		90	10		0.90298
1963	88	11			0.923564
1965	88	11			0.923564
1967		88	11		0.923564
1968	88			11	0.923564
1969	88		11		0.923564
1970	11		88		0.923564
1974	11		88		0.923564
1978			10	90	0.90298
2051		10		90	0.90298
2074	88		11		0.923564
2402	75		24		1.0
2482	80			20	0.999996
2484	14	85			0.993533
2485	14	85			0.993533
2486	14			85	0.993533
2488	14		85		0.993533
2498	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain