SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene392

Length: 1624 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene392

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase; U box n=1 Tax=Medicago truncatula RepID=Q2HTK4_MEDTR	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	kinase family protein	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPB1

Fln msg:

Fln protein: MGRRNMEEEVEEANRRIVEAESAAIDAHVKVEEYEAICEQLTTLIKEKEDDIQQLQNDARNAIKEKEAVIKERDEAREKLKRGAPPGRRFTRYTIQELKAATDNFSEDAVIGEGYYGKVYRGQFHVTPVAIKVLKLNWFQGSSRFHREMDRLSSIKHPRLVMLMGACTDGGFIVYEYMPRGSLEDRLLCKGGTPPIPWFDRMRIAAEVCEGLLFMHSLQPEPIFHHDLKPSNILLDNDLGSKISDFGLVRLVSDRSRLQYLTPESDVYRFGALILQLLVGEPTIEEVYKILVERVGAALAEEDEEEFKYVLDEDARWPLEQARKLAEIALECTAESGRITLPQAMQNLEKILDSVNKLESPPKRFLQVPEGFRCPISWNIMDNPYIAEDGHSYEFEAIKAWLDQGHDTSPVTLAKLKHKNVVPNRSLRSVIEYWRNKTQFFNRG*

Protein Length: 446

Fln nts: CACAAAATATTTCACCTGGGTATTTGGAAAAAA_-_ATGGGGAGGAGAAACATGGAAGAGGAGGTGGAAGAGGCCAATCGGAGAATCGTGGAGGCAGAATCGGCTGCTATAGATGCTCATGTAAAGGTTGAAGAGTACGAAGCAATCTGTGAGCAGCTTACGACGCTCATCAAGGAGAAAGAAGATGACATACAACAGCTCCAGAATGATGCCAGAAATGCCATCAAGGAAAAAGAAGCTGTCATTAAAGAACGCGATGAAGCCAGGGAGAAGCTCAAGAGGGGAGCGCCGCCGGGAAGGCGATTCACGCGCTATACCATCCAAGAACTCAAGGCTGCAACAGACAATTTCTCGGAGGATGCAGTAATTGGGGAAGGGTACTACGGCAAAGTTTACAGAGGCCAATTTCACGTTACTCCAGTAGCCATTAAAGTCTTGAAACTCAATTGGTTTCAGGGAAGCTCCCGATTTCACCGCGAGATGGATCGGTTAAGCAGTATCAAGCACCCTCGTTTGGTGATGTTAATGGGGGCTTGCACTGACGGAGGCTTCATTGTCTACGAATATATGCCCCGAGGAAGCTTAGAAGATCGGCTGCTCTGCAAAGGTGGGACTCCGCCAATTCCATGGTTCGACAGAATGCGTATCGCGGCAGAAGTCTGCGAGGGTTTGCTGTTCATGCACAGCTTACAGCCAGAGCCGATCTTTCACCACGATTTGAAACCCTCGAATATACTGTTAGACAATGATCTTGGCAGCAAAATCAGCGATTTCGGGCTCGTCCGTCTCGTTTCTGATCGTTCTCGGCTACAGTACCTTACTCCTGAGTCGGATGTTTACAGATTCGGAGCACTCATCCTGCAGCTTCTAGTCGGGGAGCCCACAATTGAGGAGGTTTACAAAATACTGGTCGAACGTGTGGGTGCAGCTCTTGCTGAAGAGGACGAGGAGGAGTTCAAGTATGTACTGGACGAGGATGCAAGATGGCCGCTGGAACAAGCAAGGAAACTGGCTGAGATCGCTTTAGAATGCACGGCCGAAAGCGGAAGGATAACCCTTCCGCAGGCAATGCAAAATTTAGAGAAAATCCTTGACTCTGTCAACAAGCTCGAATCTCCGCCTAAGCGATTCCTTCAAGTTCCCGAGGGTTTTCGCTGTCCGATCAGTTGGAACATTATGGACAACCCTTATATTGCTGAAGATGGACACTCATACGAGTTTGAGGCAATCAAAGCATGGCTTGACCAAGGCCATGACACTTCACCAGTGACTTTAGCCAAGCTCAAACATAAAAATGTCGTTCCCAATCGTTCACTTCGCTCCGTCATTGAGTACTGGCGCAACAAAACACAATTTTTCAACCGCGGATAG___AACTATGCCTGAGAGTGAGAGGAATACCAACAAAATACCTAGCCCTGCCCTACATCTACAGGAGTAATAACATGTCGAATAAATGTTAAATTTTATGGTTCAGGCATATGACCAGAAGCTCCATATTAATGTACAGTTTTATTTTCGAACATGTTGTTTAATATCTTCTGAACCAAAAGCTTGCCAATAAAATATGTCATTGGCCATATGCAACATATACTCACATACTGCTTTGATCATTGCTATCCAGTATTAC

Fln Alignment:

sp_v1.1_unigene392___MGRR-NMEEEVEEANRRIVEAESAAIDAHVKVEEYEAICEQLTTLIKEKEDDIQQLQNDARNAIKEKEAVIKERDEAREKLKRGAPPGRRFTRYTIQELKAATDNFSEDAVIGEGYYGKVYRGQFHVTPVAIKVLKLNWFQGSSRFHREMDRLSSIKHPRLVMLMGACTDGGFIVYEYMPRGSLEDRLLCKGGTPPIPWFDRMRIAAEVCEGLLFMHSLQPEPIFHHDLKPSNILLDNDLGSKISDFGLVRLVSDRSRLQYLTPESDVYRFGALILQLLVGEPTIEEVYKILVERVGAALAEEDEEEFKYVLDEDARWPLEQARKLAEIALECTAESGRITLPQAMQNLEKILDSVNKLESPPKRFLQVPEGFRCPISWNIMDNPYIAEDGHSYEFEAIKAWLDQGHDTSPVTLAKLKHKNVVPNRSLRSVIEYWRNKTQFFNRG
B8LPB1_____________MGRRKNLEQEMEEANQRIVEAESAAIEAHVKVEEYEGICEQLTTLLKDKEDAIQRLQKDAKNAIKEKEAAIKERDEARERLKRGAPPGRRFTRYTIQELKAATNNFSEDAVIGEGCYGIVYKGQFHVTPVAIKLLKVNWFEGSSRFQREMDRLSSIKHPRLVMLMGACPDGGFIIYEYMPRGSLEDRLRCKDGTPPLPWFDRMRIAAEICEGLLFMHSIQPEPIVHHDLKPSNILLDNDLGSKISDFGLVRLVSDRSRLQNLTPESDVYRFGILILQLLVGEPTIEPMFKILIESVAAALADDDEEEFKYVLDEDGRWPLEQARQLAEIALECTAESGRVSLPQAMQNLERILDSA-KLEPPPKQFLKVPEGFRCPISWNIMEKPYIAEDGHSYELEAIKAWLDQGHDTSPVTLAKLKHHNLVPNRSLRSVIEYWRNKTQFFNRG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
159	14		85		0.993533
185	71	28			1.0
366			12	87	0.992554
477		50	50		1.0
1140		60	40		1.0
1146			16	83	0.994512
1490		66		33	1.0
1502		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain