SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene352

Length: 2028 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene352
CGTCGTGACCTTGGCTGTCACTCAAATTCCTAAAACCCTACATAAACCCGAAATTTCTCAGATATAAAATCTAACGAGTCTGAAAAACCGGGGCTTTTCCTCCGCCCCAAGCCTAGGTATTGCAGAACCGAAAACCACGTCTGGAATGGCTGCTATGAACCACGTCTGCCCTTGAATCCGGTCTGCCCTCTTCAAACTCAAAAGATCCCACCATGTCCGCAGCATCCAGAGGACTCATTGCGCGGTTTCGAGTCCTGTGGACTTCACATTCGCGTTCACCGCTGTTTTCTTCTGTTTGCTCCGACTCATTCACTTCTCCTGTACGTGCTGCTGCACCTTTTTTGTCTCATGTTTGTAGATTCAGCACGGATGCATTGAAGACGGAGGATGGGGAGGCTGGAAGCCGGTTGATCATAGAGGCAAAGCCCAGGCCCATAGGATCCGAGTCTAAAAGAACAGGGGCTATAGCTGTCAAATGTGGAATGACGGCCATTTGGGATAAGTGGGGGGCCAGAGTTCCGATCACAATTCTATGGGTTGACGATAACATCGTCTGTCAAGTTAAAACCGTCGAGAAAGAAGGCCACAATGCTCTGCAGATAGGGTCGGGCCAGAAGAAGGAAAAACAGCTGTCGAAGCCCGTGGTGGGTCATTTCAGAGCACTAGGAGTGCCGATGAAGAGAAAGTTGAAGGAGTTCCCTGTATCAGAGGATGCCCTTCTCCCTGTGGGCACTCCTATAACTGTTCGTCACTTCTATGTAGGCCAGTATGTTGATATTACTGGAATTACGCGTGGTAAAGGTTTCCAGGGTGGAATGAAAAGGTGGGGATTTGCTGGGGGACCAGCATCTCATGGTGCATCTCTATCACATCGAAGTATTGGGTCTACTGGTGGTAGACAAGATCCTGGAAAGGTTTTCAAGGGAAAGAAGATGCCAGGGCATATGGGTTGTGAGCAGCGAACTACTAAAAATATATGGGTGTATAAAATAGATCCAGCAAGGAATCTCATGTGGGTTAAGGGCCAGGTACCAGGGGCTGAGGGAAATTTTGTTTTTATAAAAGATGCAGTGTACAAGAAGCCAAACCCGGATTTGATCCCTTTTCCAACACATTTTTCCTCTCCAGATGAGGACTTATCAGCTTTAGAACCTATTACTATTGACCTTGGGACTGTTGATCCATTCATGCAGGAATAAATTGAACTCACATCATGGAATTGGCTTTTCCATGAGCTTTTAAGCTACAAATAAGATTCGAATGACTCTGCTTTCTCAGCATTGCATAAGTATTGACATAGATACACAACTGGAAGACCTTGGGCAAGAAATATACTGAAGAAGAGTTGAAAATTGAAAGGGTCGAATGCTCACCTACTGATTTTTGCTATGCTGGCTATTTATGAAATGACAGATCCAGCTATCTGCAGGTCTTTGTTAACATAGATTTCTTTACTGTGCAGGAAGAGAACAAATGCATGCATGCATAGATGCATGATTTTGAGAGAGAGTTTCCGTTTGTTATGGTACATTATTTATTTTCGTTTCTCATCTTACTTTTGGTATTTTTACAAAATTATCATTAAAAGTTTGAAGAAGAGGTTCAATATCCTCTTCTCGTGGCCTCAAATACTAGTATAGATTGGAACTTAGGTGTTTAAGGCCCTTCAATCATCTTTCTACCTTTCTTTAATTACTGCAGTCTGATATATTTGAATATAGCTCTGAGATACCTTGCAAAAATGTTTAACCAATTCAGAACTGGAACCCTTCTTTATTTAGAAGCAAAGGCCAGAACATAATTGCTTTTATTTTTTAATAAGTACCATTATTCCGTTTTGACAACAGTCTGGGCTTTCTTTTTATGCAATAAACTTTGCAGAATCTGTTCATCTGGCACATTTGTATTTATTCCTACCCATAATAGACAGACAGCAGTTATGGGTCAGATAATTTTACTAATTGGACTAAGTCTAAACATACACTTTTCCATTTATAATTAAAACGATGATTCATATTTGTCCATCGA

Ace file of the UniGene sp_v1.1_unigene352 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RPL3P; RPL3P (RIBOSOMAL PROTEIN L3 PLASTID); structural constituent of ribosome	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMM2

Fln msg:

Fln protein: MSAASRGLIARFRVLWTSHSRSPLFSSVCSDSFTSPVRAAAPFLSHVCRFSTDALKTEDGEAGSRLIIEAKPRPIGSESKRTGAIAVKCGMTAIWDKWGARVPITILWVDDNIVCQVKTVEKEGHNALQIGSGQKKEKQLSKPVVGHFRALGVPMKRKLKEFPVSEDALLPVGTPITVRHFYVGQYVDITGITRGKGFQGGMKRWGFAGGPASHGASLSHRSIGSTGGRQDPGKVFKGKKMPGHMGCEQRTTKNIWVYKIDPARNLMWVKGQVPGAEGNFVFIKDAVYKKPNPDLIPFPTHFSSPDEDLSALEPITIDLGTVDPFMQE*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCCTAAAACCCTACATAAACCCGAAATTTCTCAGATATAAAATCTAACGAGTCTGAAAAACCGGGGCTTTTCCTCCGCCCCAAGCCTAGGTATTGCAGAACCGAAAACCACGTCTGGAATGGCTGCTATGAACCACGTCTGCCCTTGAATCCGGTCTGCCCTCTTCAAACTCAAAAGATCCCACC_-_ATGTCCGCAGCATCCAGAGGACTCATTGCGCGGTTTCGAGTCCTGTGGACTTCACATTCGCGTTCACCGCTGTTTTCTTCTGTTTGCTCCGACTCATTCACTTCTCCTGTACGTGCTGCTGCACCTTTTTTGTCTCATGTTTGTAGATTCAGCACGGATGCATTGAAGACGGAGGATGGGGAGGCTGGAAGCCGGTTGATCATAGAGGCAAAGCCCAGGCCCATAGGATCCGAGTCTAAAAGAACAGGGGCTATAGCTGTCAAATGTGGAATGACGGCCATTTGGGATAAGTGGGGGGCCAGAGTTCCGATCACAATTCTATGGGTTGACGATAACATCGTCTGTCAAGTTAAAACCGTCGAGAAAGAAGGCCACAATGCTCTGCAGATAGGGTCGGGCCAGAAGAAGGAAAAACAGCTGTCGAAGCCCGTGGTGGGTCATTTCAGAGCACTAGGAGTGCCGATGAAGAGAAAGTTGAAGGAGTTCCCTGTATCAGAGGATGCCCTTCTCCCTGTGGGCACTCCTATAACTGTTCGTCACTTCTATGTAGGCCAGTATGTTGATATTACTGGAATTACGCGTGGTAAAGGTTTCCAGGGTGGAATGAAAAGGTGGGGATTTGCTGGGGGACCAGCATCTCATGGTGCATCTCTATCACATCGAAGTATTGGGTCTACTGGTGGTAGACAAGATCCTGGAAAGGTTTTCAAGGGAAAGAAGATGCCAGGGCATATGGGTTGTGAGCAGCGAACTACTAAAAATATATGGGTGTATAAAATAGATCCAGCAAGGAATCTCATGTGGGTTAAGGGCCAGGTACCAGGGGCTGAGGGAAATTTTGTTTTTATAAAAGATGCAGTGTACAAGAAGCCAAACCCGGATTTGATCCCTTTTCCAACACATTTTTCCTCTCCAGATGAGGACTTATCAGCTTTAGAACCTATTACTATTGACCTTGGGACTGTTGATCCATTCATGCAGGAATAA___ATTGAACTCACATCATGGAATTGGCTTTTCCATGAGCTTTTAAGCTACAAATAAGATTCGAATGACTCTGCTTTCTCAGCATTGCATAAGTATTGACATAGATACACAACTGGAAGACCTTGGGCAAGAAATATACTGAAGAAGAGTTGAAAATTGAAAGGGTCGAATGCTCACCTACTGATTTTTGCTATGCTGGCTATTTATGAAATGACAGATCCAGCTATCTGCAGGTCTTTGTTAACATAGATTTCTTTACTGTGCAGGAAGAGAACAAATGCATGCATGCATAGATGCATGATTTTGAGAGAGAGTTTCCGTTTGTTATGGTACATTATTTATTTTCGTTTCTCATCTTACTTTTGGTATTTTTACAAAATTATCATTAAAAGTTTGAAGAAGAGGTTCAATATCCTCTTCTCGTGGCCTCAAATACTAGTATAGATTGGAACTTAGGTGTTTAAGGCCCTTCAATCATCTTTCTACCTTTCTTTAATTACTGCAGTCTGATATATTTGAATATAGCTCTGAGATACCTTGCAAAAATGTTTAACCAATTCAGAACTGGAACCCTTCTTTATTTAGAAGCAAAGGCCAGAACATAATTGCTTTTATTTTTTAATAAGTACCATTATTCCGTTTTGACAACAGTCTGGGCTTTCTTTTTATGCAATAAACTTTGCAGAATCTGTTCATCTGGCACATTTGTATTTATTCCTACCCATAATAGACAGACAGCAGTTATGGGTCAGATAATTTTACTAATTGGACTAAGTCTAAACATACACTTTTCCATTTATAATTAAAACGATGATTCATATTTGTCCATCGA

Fln Alignment:

sp_v1.1_unigene352___GAIAVKCGMTAIWDKWGARVPITIL-WVDDNIVCQVKTVEKEGHNALQIGSGQKKEKQLSKPVVGHFRALGVPMKRKLKEFPVSEDALLPVGTPITVRH-FYVGQYVDITGITRGKGFQGGMKRWGFAGGPASHGASLSHRSIGSTGGRQDPGKVFKGKKMPGHMGCEQRTTKNIWVYKIDPARNLMWVKGQVPGAEGNFVFIKDA
A9NMM2_____________GVMGTKLGMMSYFEPGGKFVPVTVVGFHEGNIVTQIKTEATDGYEAVQVGYRRVRDKKLTKPEMGHLNKVGTIPMRHLQEFRLTSVDGFELSQRLTFEELFKEGDLVDVSGKSIGKGFQGGIKRHNFRRGPMSHG-SKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKTKIRKLQVVKIDSELRTVLIKGAVPGKPGNLLRITPA

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
562		12		87	0.992554
807			72	27	1.0
874	84			15	0.999986
912	63	27		9	1.0
934		88		11	0.923564
935	88		11		0.923564
937	88		11		0.923564
939		88	11		0.923564
941	11		88		0.923564
943		11	88		0.923564
944		11		88	0.923564
945	11			88	0.923564
946	11			88	0.923564
949		88		11	0.923564
950		11		88	0.923564
951	11			88	0.923564
953			11	88	0.923564
954	11			88	0.923564
958	25	75			1.0
984			16	83	0.994512
985	16			83	0.994512
986		80	20		0.995493
987		80		20	0.995493
988		80	20		0.995493
989	20			80	0.995493
995	20	80			0.995493
996	20	80			0.995493
1003		80	20		0.995493
1004	20			80	0.995493
1005		20	80		0.995493
1070		66		33	0.997452
1072	33	66			0.997452
1077		66	33		0.997452
1081	66		33		0.997452
1378	66		33		0.997452
1396		33		66	1.0
1415			25	75	0.996473
1420	25		75		0.996473
1423		75		25	0.996473
1425	75		25		0.996473
1427		75		25	0.996473
1428		75	25		0.996473
1430	75	25			0.996473
1431	25			75	0.996473
1437		25	75		0.996473
1438	75			25	0.996473
1441	75		25		0.996473
1442	25			75	0.996473
1443	25			75	0.996473
1516		75		25	0.996473
1586	87			12	0.992554
1642		87		12	0.992554
1930		10	90		0.90298
1931		10	90		0.90298
1933			90	10	0.90298
1934	11		88		0.923564
1939	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
542	555	ATGC ATGC ATGC AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain