SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene263

Length: 2216 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene263
GCATGNNGGGAGTTTGCAGATACCAGAGCAAAAAATGTACCAGGTTCATGTTCAAAGGCATGCTCTGTGCTTGCTTGCTGCAACCCTTGTGTGTTTTATTGTTCATTGCAGTGCTCTGACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCCCAACTCAACGGAACGAGGAATTTTCTCAGAAACTGGAACGAATCAGACGCGACCCCATGTGGCTGGGCTGGAGTAATATGCAATCCACTTACTAAACGAGTTACTACATTAAACCTGCCGTATCTGCTCCTCAGTGGAACTATATCTCCCAGCATTGGCAAATTGAACAGGCTGCACAGATTAGCTCTTCATGAGAACAGGTTGCATGGACACATCCCTCCAGAGATAGGCAAATGCACAGAGTTGAGAGCATTATACTTGCGGGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTAGATCTTTCAAGCAATTCATTGAAAGGAGTGATTCCACCATCTATTGGTGAATTAGGCATGCTGAGATTCTTAAATTTATCCACAAACTTCTTTGCGGGGGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACCTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGTAAGAATATGCTTGAGTTCCCTGCAATCGTACCCAAGCCCAATGATAATGACAACGTCACGGATGTTAAACAAGTAGAGCATGCTAGGACATTGGCACGGTACTTGAACGGACTCCTTATTGGAGCAATGGTTACAATGGGAGTCGCTCTTTGTGTGCTCCTTGTGTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGCAATGTAGACAGATAGAGCAACTCCCCCAGAACCAAACAGACACGCAGCTTGTTACATTCCATGGAGATTTACCATACACATCTGAGGATATTATAAAAAAGATAGAGATGCTTGGTGACACTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGCTGGTGATGGACAATAACAGTTTATTTGCAGTGAAGAAAATTGAGAAGTCTGGTGTAGCATCCAATCGGATATTTGAGAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGTGGTTATTGTAAATCTCCATCAGCTAAAATGCTTATCTATGATTTCTTACTCATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACTCCGCCTTTAAATTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCTTACTTGCATCATGACTGTGACCCTAGAATTGTTCACCGTGACATAAAGTCGAGCAATATACTCATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGCGAAACACATGTAACCACCATTGTTGCAGGCACACTCGGATACTTAGCTCCGGAGTACTTGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAATGATCCTTCCTTTATGAATGAGGGAGTGAATGTGGTAGGATGGGTTAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTGTTGATCCAAGATGTGGTTGTGTACCACGGGATAGTATTGAGACAGTTCTTGAAATTGCAACCAGGTGCATAGCACCAAATCCTGAAGAACGGCCAACAATGAACAGAGTAGTGCAGATGCTGGAAGAAGAGACTATGCCACCCTACTCAAGGGAGTTCTACCCAGTAATGAACCCTGTAGTTCGAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAGTTTTATGACTCATGTTCTGATGGAAAGGGAATTCAATTCGACTGCTAGATGTAGAGATAATTTAAGGTGATAATGCTTTCCATTTAATGTTATTGTTTTCATTGAGGATGTATTGTTTGGGCCTTTAGTAGTCCCCTCCTTTATTTTGCTTTACCCATTTGTATATAAACCATAATGAGATATAGTAATTTTTTATGACAGTAGAGCAGATCATCCGTGCCAAGCAAAACTAAATTGTATGTGAATTATAATCAGCAGTCAGCTGTATGAATGAAATTCAAATAGAAGATTCTACGATGTAAAG

Ace file of the UniGene sp_v1.1_unigene263 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein / protein kinase family protein	-	-	58%
FL-Next	sp=LRR receptor-like serine/threonine-protein kinase FEI 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	brassinosteroid insensitive 1-associated receptor kinase 1	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	72%
Blast2go	Leucine-rich repeat	IPR001611	-	72%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	72%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	72%
Blast2go	Protein kinase-like domain	IPR011009	-	72%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	72%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	72%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	72%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: C0LGF4

Fln msg: your sequence is longer than subject: 642 - 591

Fln protein: MYQVHVQRHALCLLAATLVCFIVHCSALTPDGKALLEFKAQLNGTRNFLRNWNESDATPCGWAGVICNPLTKRVTTLNLPYLLLSGTISPSIGKLNRLHRLALHENRLHGHIPPEIGKCTELRALYLRDNYLEGEIPAELGNLSNLVILDLSSNSLKGVIPPSIGELGMLRFLNLSTNFFAGEIPKTGVLGGFSNHSFIGNLDLCGLQVEKLCKNMLEFPAIVPKPNDNDNVTDVKQVEHARTLARYLNGLLIGAMVTMGVALCVLLVFLWVCFLSKKGVKEEKQCRQIEQLPQNQTDTQLVTFHGDLPYTSEDIIKKIEMLGDTDIIGSGGFGTVYKLVMDNNSLFAVKKIEKSGVASNRIFERELEILGSIKHRNLVNLRGYCKSPSAKMLIYDFLLMGSLDEFLHDCKRPTPPLNWMARLKIALGAGRGLAYLHHDCDPRIVHRDIKSSNILIDERLEAHVSDFGLAKLLEDGETHVTTIVAGTLGYLAPEYLQSGRATEKSDVYSFGVVLLELLSGKRPNDPSFMNEGVNVVGWVNTLMRESKLEEIVDPRCGCVPRDSIETVLEIATRCIAPNPEERPTMNRVVQMLEEETMPPYSREFYPVMNPVVRMLEEETMSTCHSEFYDSCSDGKGIQFDC*

Protein Length: 643

Fln nts: GCATGgtGGGAGTTTGCAGATACCAGAGCAAAAA_-_ATGTACCAGGTTCATGTTCAAAGGCATGCTCTGTGCTTGCTTGCTGCAACCCTTGTGTGTTTTATTGTTCATTGCAGTGCTCTGACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCCCAACTCAACGGAACGAGGAATTTTCTCAGAAACTGGAACGAATCAGACGCGACCCCATGTGGCTGGGCTGGAGTAATATGCAATCCACTTACTAAACGAGTTACTACATTAAACCTGCCGTATCTGCTCCTCAGTGGAACTATATCTCCCAGCATTGGCAAATTGAACAGGCTGCACAGATTAGCTCTTCATGAGAACAGGTTGCATGGACACATCCCTCCAGAGATAGGCAAATGCACAGAGTTGAGAGCATTATACTTGCGGGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTAGATCTTTCAAGCAATTCATTGAAAGGAGTGATTCCACCATCTATTGGTGAATTAGGCATGCTGAGATTCTTAAATTTATCCACAAACTTCTTTGCGGGGGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACCTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGTAAGAATATGCTTGAGTTCCCTGCAATCGTACCCAAGCCCAATGATAATGACAACGTCACGGATGTTAAACAAGTAGAGCATGCTAGGACATTGGCACGGTACTTGAACGGACTCCTTATTGGAGCAATGGTTACAATGGGAGTCGCTCTTTGTGTGCTCCTTGTGTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGCAATGTAGACAGATAGAGCAACTCCCCCAGAACCAAACAGACACGCAGCTTGTTACATTCCATGGAGATTTACCATACACATCTGAGGATATTATAAAAAAGATAGAGATGCTTGGTGACACTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGCTGGTGATGGACAATAACAGTTTATTTGCAGTGAAGAAAATTGAGAAGTCTGGTGTAGCATCCAATCGGATATTTGAGAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGTGGTTATTGTAAATCTCCATCAGCTAAAATGCTTATCTATGATTTCTTACTCATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACTCCGCCTTTAAATTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCTTACTTGCATCATGACTGTGACCCTAGAATTGTTCACCGTGACATAAAGTCGAGCAATATACTCATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGCGAAACACATGTAACCACCATTGTTGCAGGCACACTCGGATACTTAGCTCCGGAGTACTTGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAATGATCCTTCCTTTATGAATGAGGGAGTGAATGTGGTAGGATGGGTTAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTGTTGATCCAAGATGTGGTTGTGTACCACGGGATAGTATTGAGACAGTTCTTGAAATTGCAACCAGGTGCATAGCACCAAATCCTGAAGAACGGCCAACAATGAACAGAGTAGTGCAGATGCTGGAAGAAGAGACTATGCCACCCTACTCAAGGGAGTTCTACCCAGTAATGAACCCTGTAGTTCGAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAGTTTTATGACTCATGTTCTGATGGAAAGGGAATTCAATTCGACTGCTAG___ATGTAGAGATAATTTAAGGTGATAATGCTTTCCATTTAATGTTATTGTTTTCATTGAGGATGTATTGTTTGGGCCTTTAGTAGTCCCCTCCTTTATTTTGCTTTACCCATTTGTATATAAACCATAATGAGATATAGTAATTTTTTATGACAGTAGAGCAGATCATCCGTGCCAAGCAAAACTAAATTGTATGTGAATTATAATCAGCAGTCAGCTGTATGAATGAAATTCAAATAGAAGATTCTACGATGTAAAG

Fln Alignment:

sp_v1.1_unigene263___LLAATLVCFIVHCS-ALTPDGKALLEFKAQLNGTRNFLRNWNESDATPCGWAGVICNPLTKRVTTLNLPYLLLSGTISPSIGKLNRLHRLALHENRLHGHIPPEIGKCTELRALYLRDNYLEGEIPAELGNLSNLVILDLSSNSLKGVIPPSIGELGMLRFLNLSTNFFAGEIPKTGVLGGFSNHSFIGNLDLCGLQVEKLCKNMLEFPAIVPKPNDNDNVTDVKQVEHARTLARYLNGLLIGAMVTMGXXXXXXXXXXXXXXLSKKGVKEEKQCRQIEQLPQNQTD-TQLVTFHGDLPYTSEDIIKKIEMLGDTDIIGSGGFGTVYKLVMDNNSLFAVKKIEKSGVASNRIFERELEILGSIKHRNLVNLRGYCKSPSAKMLIYDFLLMGSLDEFLHDCKRPTPPLNWMARLKIALGAGRGLAYLHHDCDPRIVHRDIKSSNILIDERLEAHVSDFGLAKLLEDGETHVTTIVAGTLGYLAPEYLQSGRATEKSDVYSFGVVLLELLSGKRPNDPSFMNEGVNVVGWVNTLMRESKLEEIVDPRCGCVPRDSIETVLEIATRCIAPNPEERPTMNRVVQMLEEETMPPYSREFY
C0LGF4_____________LLLISLLCSLSNESQAISPDGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVDVVCQDDSGNPSSHSQSGQNQKKNSGK--------------LLISASATVGALLLVALMCFWGCFLYKKLGKVE-----IKSLAKDVGGGASIVMFHGDLPYSSKDIIKKLEMLNEEHIIGCGGFGTVYKLAMDDGKVFALKRILKLNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLLYDYLPGGSLDEALHERGEQ---LDWDSRVNIIIGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNVVGWLKFLISEKRPRDIVDPNCEGMQMESLDALLSIATQCVSPSPEERPTMHRVVQLLESEVMTPCPSEFY

SNPs (tot: 3)

Position	A %	C %	G %	Probability
1309	83		16	0.994512
1390	85		14	0.993533
1944		50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain