SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene234

Length: 2803 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene234
ATGGGGGAATCTGGGTCAGACACACAGATATGCCCATATATATTTATTTGGCTGTGGGAAGAAGTTTTTGATGATAATTTGTTGGAACCGTAAAGTAGGTGTATGAACCAAAAAGGACGATACACAAATCCTTTAATGGAGACGGAGGAGGAGGAAGGACGAGGATCCCCAAGGCCCATTGCTTTATAGCCTGGAAAGAATTTTAAAGCTTATAGAGATATTATTGTTGCTCTATAATAGTAATGATAAATTTAGGCCTAGGCATAGGTGTGTCATTGCCATTCTTAGAAGCAATGCCTGGCACTGGCCACTGCCTACAGTCCAGCTCTCAAAGCCTGTCCTTTAGCTGTTGTCTCAATGCCTTGTCTTACTTTGTGAGCTGGTGTCTGTCATGGAGGTAGAGGAAGAATCATTTGGCTTTTAAGTTTTACCCCATTTTTCTTCAGTAACAAGAAGTGCCTCCATGGTTCGCAGCAGATCGGAGCTTGGCTGAGACGCGATTAGGTAACCCGTCTGCGGCAATTTTTTCTCTGCAATGTGGGCTTGTTGGGCATTTTACAGAAGCATGACTGGCAGAGAAGAATAGCAGCAAGTATATATCTCTGTTTTTCGCTTGCTGTGATGTATTGGTCGCAGATGGGGAATACACGGCAGCTTTTCAATGGTTTCTTCGTGCTGGTGCTAGTAGTGGCCGTGGTTAAGGGGGAGCCAACGGGCGATAAACAGGCCCTTCTCGATTTTCTCAGCAAGGTTCCCCATGGGCGAAGGCTAAACTGGAATGCCAGCAGCTCAGCTTGTACTTGGGTTGGAGTGACCTGCAATAGTAACAAGGATCGCATCTGGGAAGTTAGATTGCCGGGCGTGGGACTCTTTGGACAGATTCCCCCTGGCACTCTGGGGCGTCTGACGGAGCTCAGAGTTCTTTCCCTGAGATCAAATTTGCTCACCGGTTCTCTGCCTTCAGACCTTGCAAATGCCAAGGCTCTGAGAAGTATCTATCTTCAGCATAACTTGTTTTCCGGGCCTTTGCCTCCGTTTCTGTCTCAATGGGGGCGCTTGAGTCGACTGGATCTTTCCTTCAATCATTTGAATGGGTCTATTCCCTTTTCCTTGAATAACCTCACGCATCTCACTGGTCTCTTGTTGCAGAACAATTCGCTGAGTGGAAGCATACCCAATCTCAACATCCAGAACTTGACTCTGTTCAGTGTGGCCAACAATCAGCTGAACGGTTCGATTCCTAGGTCGCTTCAGAAGTTTCCCAAGACTTCTTTCCAAGGCAATGCTCGGCTCTGCGGGGTTCCATTAAAACTGTGCAAATCGTTTTTCCCGTCGCCTTCTCCCTCTCCCAACGGCTCTGCTGTGCCCCGGAGGTCCAAGAAATCGAAGCTGAGCACCGGCGTGGTCGTGGCTATCATCGTGGGCGCCGTTGCTGTGCTCTTCTTGTTGCTGGTATGCCTATTTTTGTGCTGCGTTAGAAAGCACAGGGGCGAGAGTGCGACGGAGAAGCCTCAGAAAGACGAGCGGACCACGGTCGAGAAGGGCGGGCCTTCTAAGGAGGAATACATGGGGACTGCCCAGGAGACAGAGCGCAATAAGCTCGTATTCTTCGAGGGCAGCCAGTATACTTTCGACCTGGAAGATCTTCTCCGCGCTTCTGCAGAGGTTCTGGGGAAAGGAAGCGTGGGGACGGCCTACAAGGCAGTGCTGGAAGATGGGACTACTGTTGTGGTCAAACGCTTGAAGGACGTGGCTGTCAACAGGAGGGATTTTGAACAGCAGATGGAACTGGTGGGAAGGATCCGTCACAGGAATTTGGTGCCCTTGAGAGCCTTCTACTATTCCAAAGATAGAGAAATTGCTCGTCTATGACTATATGCCCTCTGGCAGCTTATCAGCCCTTTTGCATGGTAGCAGAGGCTCTGGCCGCACTCCTTTGGATTGGGAAACCAGGATGCGGATTGCTTTGGGTGCTGCAAGGGGCATTTCCCACATCCACGAAGAAGGCGGAGGCAAATTCACTCATGGAAACATAAAGTCATCCAATGTTCTGTTAACGTCCGAATTGGATGGCTGCGTCTCAGACTTCGGCCTCGTTCCATTATTTAGCGCTGCAGCAGCAGCAAACCGCATCGCTGGTTACAGAGCCCCGGAGGTCATAGAGACTCGCAAGGTCACACAGAAATCCGATGTCTACAGCTTCGGTGTGCTACTCCTAGAACTTCTCACAGGCAAGGCTCCCAACCAGGCCTCTCTCAACGACGAGGGCATCGATCTGCCAAGATGGGTACAATCCGTGGTTCGCGAGGAGTGGACAGCAGAGGTTTTCGACGTGGAATTAATGAGGTATCAAAACATAGAAGAAGAGATGGTCCAGTTGCTGCAGATTGCCATGGCCTGCGTTGCTACAGTGCCTGATCAGAGGCCCAGAATGCAAGACGTGGTGAAGATGATCGAGGACATGAGGCAGTTCGAAACAGACGAAGGAAATAGACAATCCTCTGATGATAAATCGAAAGAATCCAATGGACAAACTCCTCCCCAGCAAGCTACACCAGAAGCACGCACCCCCACAGCAAGAACACCTTGACAGCACCCGTTCAGCAAGCACACTTTGACAGTCGAAATTCTTCTGTTTCTGTCCATATTATAACACAGTTGCCAGTATCATGGGCTTTTCGTGATTGATTTCATTTATATCCAGTATTTCAGTAAAGTAATTTCACCGCGGAATTGCTTGCTTTATATTCCGGTTTTCGTTCCCCTTTTCTTGGCTCGCTGGTGATCTTCAAGCATTCTTGAA

Ace file of the UniGene sp_v1.1_unigene234

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulation receptor kinase precursor, putative (EC:2.7.11.26)	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	75%
Blast2go	Leucine-rich repeat	IPR001611	-	75%
Blast2go	Protein kinase-like domain	IPR011009	-	75%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	75%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Overlapping hits, possible frame ERROR between 1860 and 1847, your sequence is longer than subject: 657 - 340

Fln protein: MYWSQMGNTRQLFNGFFVLVLVVAVVKGEPTGDKQALLDFLSKVPHGRRLNWNASSSACTWVGVTCNSNKDRIWEVRLPGVGLFGQIPPGTLGRLTELRVLSLRSNLLTGSLPSDLANAKALRSIYLQHNLFSGPLPPFLSQWGRLSRLDLSFNHLNGSIPFSLNNLTHLTGLLLQNNSLSGSIPNLNIQNLTLFSVANNQLNGSIPRSLQKFPKTSFQGNARLCGVPLKLCKSFFPSPSPSPNGSAVPRRSKKSKLSTGVVVAIIVGAVAVLFLLLVCLFLCCVRKHRGESATEKPQKDERTTVEKGGPSKEEYMGTAQETERNKLVFFEGSQYTFDLEDLLRASAEVLGKGSVGTAYKAVLEDGTTVVVKRLKDVAVNRRDFEQQMELVGRIRHRNLVPLRAFYYSxxxxxxLVYDYMPSGSLSALLHGSRGSGRTPLDWETRMRIALGAARGISHIHEEGGGKFTHGNIKSSNVLLTSELDGCVSDFGLVPLFSAAAAANRIAGYRAPEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVATVPDQRPRMQDVVKMIEDMRQFETDEGNRQSSDDKSKESNGQTPPQQATPEARTPTARTP*

Protein Length: 658

Fln nts: ATGGGGGAATCTGGGTCAGACACACAGATATGCCCATATATATTTATTTGGCTGTGGGAAGAAGTTTTTGATGATAATTTGTTGGAACCGTAAAGTAGGTGTATGAACCAAAAAGGACGATACACAAATCCTTTAATGGAGACGGAGGAGGAGGAAGGACGAGGATCCCCAAGGCCCATTGCTTTATAGCCTGGAAAGAATTTTAAAGCTTATAGAGATATTATTGTTGCTCTATAATAGTAATGATAAATTTAGGCCTAGGCATAGGTGTGTCATTGCCATTCTTAGAAGCAATGCCTGGCACTGGCCACTGCCTACAGTCCAGCTCTCAAAGCCTGTCCTTTAGCTGTTGTCTCAATGCCTTGTCTTACTTTGTGAGCTGGTGTCTGTCATGGAGGTAGAGGAAGAATCATTTGGCTTTTAAGTTTTACCCCATTTTTCTTCAGTAACAAGAAGTGCCTCCATGGTTCGCAGCAGATCGGAGCTTGGCTGAGACGCGATTAGGTAACCCGTCTGCGGCAATTTTTTCTCTGCAATGTGGGCTTGTTGGGCATTTTACAGAAGCATGACTGGCAGAGAAGAATAGCAGCAAGTATATATCTCTGTTTTTCGCTTGCTGTG_-_ATGTATTGGTCGCAGATGGGGAATACACGGCAGCTTTTCAATGGTTTCTTCGTGCTGGTGCTAGTAGTGGCCGTGGTTAAGGGGGAGCCAACGGGCGATAAACAGGCCCTTCTCGATTTTCTCAGCAAGGTTCCCCATGGGCGAAGGCTAAACTGGAATGCCAGCAGCTCAGCTTGTACTTGGGTTGGAGTGACCTGCAATAGTAACAAGGATCGCATCTGGGAAGTTAGATTGCCGGGCGTGGGACTCTTTGGACAGATTCCCCCTGGCACTCTGGGGCGTCTGACGGAGCTCAGAGTTCTTTCCCTGAGATCAAATTTGCTCACCGGTTCTCTGCCTTCAGACCTTGCAAATGCCAAGGCTCTGAGAAGTATCTATCTTCAGCATAACTTGTTTTCCGGGCCTTTGCCTCCGTTTCTGTCTCAATGGGGGCGCTTGAGTCGACTGGATCTTTCCTTCAATCATTTGAATGGGTCTATTCCCTTTTCCTTGAATAACCTCACGCATCTCACTGGTCTCTTGTTGCAGAACAATTCGCTGAGTGGAAGCATACCCAATCTCAACATCCAGAACTTGACTCTGTTCAGTGTGGCCAACAATCAGCTGAACGGTTCGATTCCTAGGTCGCTTCAGAAGTTTCCCAAGACTTCTTTCCAAGGCAATGCTCGGCTCTGCGGGGTTCCATTAAAACTGTGCAAATCGTTTTTCCCGTCGCCTTCTCCCTCTCCCAACGGCTCTGCTGTGCCCCGGAGGTCCAAGAAATCGAAGCTGAGCACCGGCGTGGTCGTGGCTATCATCGTGGGCGCCGTTGCTGTGCTCTTCTTGTTGCTGGTATGCCTATTTTTGTGCTGCGTTAGAAAGCACAGGGGCGAGAGTGCGACGGAGAAGCCTCAGAAAGACGAGCGGACCACGGTCGAGAAGGGCGGGCCTTCTAAGGAGGAATACATGGGGACTGCCCAGGAGACAGAGCGCAATAAGCTCGTATTCTTCGAGGGCAGCCAGTATACTTTCGACCTGGAAGATCTTCTCCGCGCTTCTGCAGAGGTTCTGGGGAAAGGAAGCGTGGGGACGGCCTACAAGGCAGTGCTGGAAGATGGGACTACTGTTGTGGTCAAACGCTTGAAGGACGTGGCTGTCAACAGGAGGGATTTTGAACAGCAGATGGAACTGGTGGGAAGGATCCGTCACAGGAATTTGGTGCCCTTGAGAGCCTTCTACTATTCCxxxxxxxxxxxxxxxxxxCTCGTCTATGACTATATGCCCTCTGGCAGCTTATCAGCCCTTTTGCATGGTAGCAGAGGCTCTGGCCGCACTCCTTTGGATTGGGAAACCAGGATGCGGATTGCTTTGGGTGCTGCAAGGGGCATTTCCCACATCCACGAAGAAGGCGGAGGCAAATTCACTCATGGAAACATAAAGTCATCCAATGTTCTGTTAACGTCCGAATTGGATGGCTGCGTCTCAGACTTCGGCCTCGTTCCATTATTTAGCGCTGCAGCAGCAGCAAACCGCATCGCTGGTTACAGAGCCCCGGAGGTCATAGAGACTCGCAAGGTCACACAGAAATCCGATGTCTACAGCTTCGGTGTGCTACTCCTAGAACTTCTCACAGGCAAGGCTCCCAACCAGGCCTCTCTCAACGACGAGGGCATCGATCTGCCAAGATGGGTACAATCCGTGGTTCGCGAGGAGTGGACAGCAGAGGTTTTCGACGTGGAATTAATGAGGTATCAAAACATAGAAGAAGAGATGGTCCAGTTGCTGCAGATTGCCATGGCCTGCGTTGCTACAGTGCCTGATCAGAGGCCCAGAATGCAAGACGTGGTGAAGATGATCGAGGACATGAGGCAGTTCGAAACAGACGAAGGAAATAGACAATCCTCTGATGATAAATCGAAAGAATCCAATGGACAAACTCCTCCCCAGCAAGCTACACCAGAAGCACGCACCCCCACAGCAAGAACACCTTGA___CAGCACCCGTTCAGCAAGCACACTTTGACAGTCGAAATTCTTCTGTTTCTGTCCATATTATAACACAGTTGCCAGTATCATGGGCTTTTCGTGATTGATTTCATTTATATCCAGTATTTCAGTAAAGTAATTTCACCGCGGAATTGCTTGCTTTATATTCCGGTTTTCGTTCCCCTTTTCTTGGCTCGCTGGTGATCTTCAAGCATTCTTGAA

Fln Alignment:

sp_v1.1_unigene234___MGTAQETERNKLVFFEGSQYTFDLEDLLRASAEVLGKGSVGTAYKAVLEDGTTVVVKRLKDVAVNRRDFEQQMELVGRIRHRNLVPLRAFYYSxxxxxLVYDYMPSGSLSALLHGSRGSGRTPLDWETRMRIALGAARGISHIHEEGGGKFTHGNIKSSNVLLTSELDGCVSDFGLVPLFSXXXXXNRIAGYRAPEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVATVPDQRPRMQDVVKMIEDMRQFETDEGNRQSSDDKSKESNG
B8LN40_____________MGSAQEAERNKLVFFEGSQYTFDLEDLLRASAEVLGKGSVGTAYKAVLEDGTTVVVKRLKDVAANRKDFEQQMELVGRIRHRNLVPLRAFYYSxxxxxLVYDYMPTGSLSALLHGSRGSGRTPLDWDTRMRIALGAARGISHIHEEGGGKFTHGNIKSSNVLLTTDLDGCVSDFGLVPLFSAAAAANRIAGYRAPEVIETRKVTQKSDVYSFGVLLLELLTGKAPNQASLNDEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVAAVPDQRPRMQDVVKMIEDMRQFETDDGNRQSSDDKSKESNG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1098	20		80		0.995493
1121	87			12	0.992554
1122		87	12		0.992554
1123		87	12		0.992554
1124			12	87	0.992554
1230		12	87		0.992554
1524		87		12	0.992554
1526	87		12		0.992554
1617			85	14	0.993533
1796			20	80	0.995493
1825		75	25		0.996473
1832	25		75		0.996473
2150		6	93		0.999153

SSRs (tot: 2)

Start position	End position	Sequence	Length
144	155	GGA GGA GGA GGA	12
2114	2125	GCA GCA GCA GCA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain