SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene153

Length: 1785 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene153

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Riboflavin synthase, alpha subunit n=1 Tax=Roseiflexus sp. RS-1 RepID=A5URX5_ROSS1	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga).	-	-	42%
Blast2go	riboflavin synthase subunit alpha	-	-	68%

Source	ECs	Term	Type	e value	Identity
Blast2go	Riboflavin synthase.	EC:2.5.1.9	-	0.0	68%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Riboflavin metabolism	00740		0.0	68%
Blast2go	Metabolic pathways	01100		0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to stress	GO:0033554	Biological Process	68%
Blast2go	riboflavin biosynthetic process	GO:0009231	Biological Process	68%
Blast2go	riboflavin synthase activity	GO:0004746	Molecular Function	68%
Blast2go	cytosol	GO:0005829	Cellular Component	68%
Blast2go	nucleus	GO:0005634	Cellular Component	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8LLH0

Fln msg: Overlapping hits, possible frame ERROR between 925 and 915,

Fln protein: MACIFLQTHSFVQANHASSIVFPACQTQVFQRYSTLKTASQTPQNRLSMHNVWFHGCRKLRYQHLKSQIGSGRGRRANKTEIRAMFTGIVEEIGKVRELRTVEEVGFELTIEANDVLVDVKMGDSIAVNGICLTVTEFDSHAFTVGLSPETLRKTSLGEAVPGYAVNLERALQPNSRMGGHxxxxxHVDGTGEIVSMEAEGDSLWIKVRTDPSLLRYIVPKGFITVDGTSLTVVDVFDDDNCFNFMLVAYTQQKVVIAGKKVGNKLNLEVDILGKYVERLLSGYRNPVASTA*

Protein Length: 294

Fln nts: TGCTGTCCTCCACGTGAAGAGATGGGGATGTATACAAGGGTTTAGGCTGTAAAATTGCTGAAGGGGATTTTGCCGGATCCAAGAGACTCTGTAAATTTCGCTTCTGTACTCCTTTTTGAATAGAATGGATGATATCTCTTTTATGGAAAAATAATTAATTGCTTCAGGTGAGAGTCAGACTCGTATCGGGAGCTAACATACAGCCAGAAACACTATCTATGGTCCAGGGCTAAAGGAGCAGGCACCTATACTTGCAATAGACGGGTGAAATTGCAGACTGACGTAGCATATCCGCAGGGACTACCGCTACGCAGTTGCTTTTGGCTTAAAAACATTTCCACGATTCACGTATAAGCAGTTTTATTAGAAA_-_ATGGCTTGCATTTTCCTGCAAACCCACAGCTTCGTCCAAGCAAACCATGCATCCAGTATCGTTTTTCCTGCTTGTCAAACCCAAGTATTTCAACGGTATTCAACGCTGAAAACCGCTTCTCAAACACCCCAAAACAGACTATCTATGCATAATGTCTGGTTCCATGGATGCAGAAAGCTCAGGTACCAACATCTTAAAAGCCAAATAGGATCAGGTCGGGGACGAAGAGCAAACAAAACAGAAATCAGGGCCATGTTCACAGGAATCGTGGAAGAAATTGGAAAGGTAAGGGAACTAAGAACTGTAGAAGAAGTGGGCTTTGAGCTGACAATCGAAGCAAACGATGTCCTTGTAGATGTCAAGATGGGGGACAGCATAGCAGTGAATGGAATATGCCTTACGGTGACAGAGTTTGATTCCCATGCCTTCACAGTTGGATTGTCCCCTGAGACCCTGAGAAAGACTTCATTGGGGGAAGCCGTTCCTGGGTACGCTGTAAACCTAGAGCGTGCCCTTCAGCCCAATTCAAGAATGGGGGGTCACxxxxxxxxxxxxxxxCATGTTGATGGGACTGGGGAGATTGTGTCAATGGAAGCAGAAGGTGACTCCCTGTGGATCAAGGTTAGGACTGACCCATCTCTGCTCAGGTACATTGTTCCCAAGGGCTTTATAACTGTGGATGGTACTAGCTTGACTGTGGTGGATGTTTTTGATGATGATAATTGCTTTAATTTTATGTTGGTGGCTTACACCCAACAGAAGGTGGTCATTGCAGGGAAGAAAGTTGGGAACAAATTGAATTTAGAGGTGGATATTCTTGGGAAGTATGTGGAGAGATTGCTTAGTGGGTACAGGAATCCTGTGGCCTCAACTGCATAG___AGGAAACCTATAGTTCTTTTGAGATTGTGGGGGGCTAATACTTGTACTGGTAGGGTCTGCCTCCTCCCCAAGGTTCGCAGAATTTTGGATTTTCATGGACATGGAATTTGATGGCTCAAATGACCTTTGAAATCAGCAATATGGGTCCCTAGGGGCAAATAAACTGCACAAATTTTAACCTAGATGGGTACATCACCTCAAATCTGCTTTGGTTCATTTCTAGATCAGTATTGAATTCGGTTTTACTATTTATGTTTGCTTTTTTATCAGAAAATACTACATATATTTCATTACGGTATCGTTAAACCACTCACAAAAAATTGTAGATCATGGAACTAAAAGCCGTGCATACATACATCAGTAAGGAGAGCTAACTTGTCCACTTTGCCTCCGATCTCAAAATACAGTTAGTTCCTTCCAAAAAAATGTCAAAATCTTAGCTGAGATCTGCATAGCTAACTTGGAGCTCTGGTCAAATAGTCCAAATTTCTCCCAAATTAAACATAATAGTTGTTGTATTTTATGTTATGTATGCATA

Fln Alignment:

sp_v1.1_unigene153___NRLSMHNVWFHGCRKLRYQHLKSQIGSGRGRRA---NKTEIRAMFTGIVEEIGKVRELRTVEEV---------GFELTIEANDVLVDVKMGDSIAVNGICLTVTEFDSHAFTVGLSPETLRKTSLGEAVPGYAVNLERALQPNSRMGGHxxxxHVDGTGEIVSMEAEGDSLWIKVRTDPSLLRYIVPKGFITVDGTSLTXXXXXXXXXXXXXMLVAYTQQKVVIAGKKVGNKLNLEVDILGKYVERLLS
D8LLH0_____________SRAALHSA---GRRQLGQGYRDQQPSSRQPRNTAAGRREVVRAMFSGIVEEMGSVASLVKNDKVKLWDGSEGAGVELTVKANTVLEGATEGCSIAVNGVCLTVTSFNDDEFKVGLAPETLRRSNLEDLRAGDGVNLERALPVDGRNSGHxxxxHVDNVGTILSMEADEDSLVVKVEVPQDLIRYIAPKGFIAVDGTSLTVCEVNNQECWFTFMLVAYTQQHVVIPKKSKGDKVNLEVDVLGKYIERSLS

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
261		40		60	1.0
296		60	40		1.0
313	40	60			1.0
327			60	40	1.0
361		40	60		1.0
367			40	60	1.0
370			60	40	1.0
670	25		75		0.996473
811	75		25		0.996473
853		66		33	0.997452
953	33			66	0.997452
956			33	66	0.997452
1071		18	81		0.999994
1144	10		90		0.90298
1282	37		50		1.0
1369	84			15	0.999986
1370	84	15			0.999986
1371	84		15		0.999986
1379			15	84	0.999986
1381	84	15			0.999986
1382	84			15	0.999986
1383	84		15		0.999986
1387			84	15	0.999986
1395			75	25	1.0
1404			72	27	1.0
1424		11		88	0.923564
1427			11	88	0.923564
1428	88		11		0.923564
1429	88	11			0.923564
1430		90		10	0.90298
1431		80	20		0.999996
1433	90	10			0.90298
1434			90	10	0.90298
1435	90	10			0.90298
1436	10			90	0.90298
1437			90	10	0.90298
1438	10		90		0.90298
1441	90	10			0.90298
1442		90		10	0.90298
1443	90		10		0.90298
1571	87			12	0.992554
1573	12			87	0.992554
1703	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain