SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene150

Length: 1648 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene150

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	histone acetyltransferase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	83%
Blast2go	regulation of glucosinolate biosynthetic process	GO:0010439	Biological Process	83%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	83%
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	83%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	83%
Blast2go	root morphogenesis	GO:0010015	Biological Process	83%
Blast2go	response to light stimulus	GO:0009416	Biological Process	83%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	83%
Blast2go	histone acetylation	GO:0016573	Biological Process	83%
Blast2go	H3 histone acetyltransferase activity	GO:0010484	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	DNA binding	GO:0003677	Molecular Function	83%
Blast2go	histone acetyltransferase complex	GO:0000123	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	GNAT domain	IPR000182	-	83%
Blast2go	Bromodomain	IPR001487	-	83%
Blast2go	Acyl-CoA N-acyltransferase	IPR016181	-	83%
Blast2go	Bromodomain, conserved site	IPR018359	-	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: your sequence is shorter than subject: 425 - 630

Fln protein: LDTVKEEKISCNNMGSNVSANNAQVAPSGSALLASSVKEEANKLTSTDNIQTSGAYCSREESLKREEDAGRLQFVCFSNDGIDQHMIWLIGLKNIFARQLPNMPKAYIVRLVMDRSHKSMMIIKQNQVVGGISYRPYPSQRFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNHAVGYFIKQGFTKEIDLEKERWHGYIKDYDGVILMECKIDTKLPYTDLPAMIRQQRQTLDEKIRELSNCHIVYSGIDIPKKEAGVPRKPIKVEDIPGLKEAGWTPDQWGYSRFRLLNTPSEGLPNRQALHAFMRSLCKAMTEHADSWPFKDPVDPHDVPDYYDIIKDPMDLKTMSKRLDSEQYYVTLDMFIADVKRMFTNARKYNAPETIYYKCANRLDSYFLAKLQAGTQVNNRNQQ*

Protein Length: 426

Fln nts: CTTGACACAGTCAAAGAGGAGAAGATTAGCTGTAACAACATGGGCAGTAATGTCTCAGCCAACAATGCTCAAGTTGCTCCTTCCGGTTCTGCTCTTTTAGCCAGTTCCGTGAAAGAGGAAGCTAATAAGCTTACTTCCACTGATAACATTCAAACCAGTGGAGCCTATTGTTCTAGAGAAGAATCCCTCAAGAGAGAGGAAGATGCAGGCCGTCTTCAATTCGTGTGTTTTAGTAATGATGGAATTGATCAACATATGATTTGGCTTATTGGATTAAAGAATATATTTGCAAGGCAACTTCCCAATATGCCAAAGGCGTACATTGTTAGACTTGTAATGGACAGGAGCCACAAGTCAATGATGATCATCAAGCAAAATCAAGTTGTTGGGGGCATTTCTTATCGCCCTTATCCTAGTCAGAGATTTGGAGAAATAGCTTTCTGTGCTATTACTGCGGATGAACAAGTAAAAGGCTATGGGACAAGGCTGATGAATCATTTGAAGCAACATGCTCGTGATGTGGATGGGCTAACACACTTTCTAACATATGCTGACAATCACGCAGTTGGCTACTTCATTAAACAGGGTTTTACAAAGGAGATCGATTTGGAGAAGGAGAGATGGCATGGGTACATTAAGGACTATGATGGAGTAATCCTCATGGAATGCAAAATTGACACTAAGTTGCCTTACACAGATCTACCAGCTATGATCCGGCAGCAGCGGCAGACATTAGACGAAAAGATAAGGGAGCTTTCTAATTGCCATATTGTCTACTCAGGCATTGACATTCCAAAGAAAGAAGCAGGCGTTCCTAGGAAACCCATCAAGGTTGAGGACATTCCTGGTCTGAAGGAGGCTGGCTGGACACCAGATCAATGGGGTTACTCGCGTTTTCGTTTATTGAATACCCCATCGGAGGGCCTTCCAAATCGCCAGGCCCTTCATGCCTTTATGCGTTCGCTATGTAAGGCTATGACTGAACATGCTGATTCTTGGCCATTCAAGGACCCAGTAGATCCTCATGATGTGCCTGACTACTATGATATCATAAAAGATCCAATGGATTTGAAAACAATGTCAAAGCGCCTGGACAGTGAGCAATACTATGTAACACTGGACATGTTCATTGCGGATGTAAAGAGGATGTTTACGAATGCACGCAAATATAATGCCCCCGAAACTATTTATTATAAATGTGCAAACAGGTTGGATTCTTACTTTTTAGCCAAACTTCAAGCTGGAACCCAGGTTAATAACAGGAATCAGCAGTGA___TGGAATTGTGGTTATAATTCCCTCTCAAATCAAACAAGCACTGCTGTGCCTGTGGTGCTCCCCATGCTTTTGCATGGTCTTCCTATAAAACGTACGAATTTGCATTTTTAAGTATAATTTAATGAATTAAACTTAAATCGCAAGGTTGCTGGCTTTTAACTATAACTGTCAGACTTCCTCTATTGGCATGGAAGCAATTGATGTTACCACAGAAGAAGCCGGATTTTCCTATATATTTTTATGCAAGTTGTTGTGTTTTTTAATTCTTCTTGTTAGCCTGAAATAATGTCTATAATTTGATCTTTCTTGAATTGTTGGGAATACTGGATATTTTGTTTGGCAGAGCTACTTTCTATTGCAATAAATGGATCAA

Fln Alignment:

sp_v1.1_unigene150___LDTVKEEKISCNNMGSN-VSANNAQVAPSGSALLASSVKEEANKLTSTDNIQTSGAYCSREESLKREEDAGRLQFVCFSNDGIDQHMIWLIGLKNIFARQLPNMPKAYIVRLVMDRSHKSMMIIKQNQVVGGISYRPYPSQRFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNHAVGYFIKQGFTKEIDLEKERWHGYIKDYDGVILMECKIDTKLPYTDLPAMIRQQRQTLDEKIRELSNCHIVYSGIDIPKKEAGVPRKPIKVEDIPGLKEAGWTPDQWGYSRFRLLNTPSEGLPNRQALHAFMRSLCKAMTEHADSWPFKXXXXXXXXXXXXXIIKDPMDLKTMSKRLDSEQYYVTLDMFIADVKRMFTNARKYNAPETIYYKCANRLDSYFLAKLQAGTQVNNRNQQ
B8LPU6_____________LDTVKAEKISSNNNNNNNVSANNAQVAPSGSAVLLSAVKEEANKPTSTDHIQTSGAYCAREESLKREEDADRLKFVCFGNDGIDQHMIWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSMMIIKQNQVVGGISYRPYLSQRFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNHAVGYFIKQGFTKEIDLEKERWHGYIKDYDGVILMECKIDPKLPYTDLPAMIRRQRQTLDEKIRELSNCHIVYSGIDIQKKEAGIPRKPIKVEDIPGLKEAGWTPDQWGYSRIRLMNIPSEGLPNRQALHAFMRSLFKAMTEHADAWPFKDPVDPRDVPDYYDIIKDPMDLKTMSKRLDSEQYYVTLDMFVADVKRMFTNARTYNTPETIYYKCANRLDSYFFNKLQAGTQVNNKNQQ

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
637		14		85	0.999981
643		85		14	0.999981
724	12		87		0.992554
725		87		12	0.992554
727			87	12	0.992554
728		87		12	0.992554
732	12	87			0.992554
734			12	87	0.992554
739		85		14	0.993533
741	83			16	0.994512
742	83			16	0.994512
743	83		16		0.994512
811		33		66	1.0
862	16			83	0.994512
872	16	83			0.994512
876	83			16	0.994512
880	83		16		0.994512
887		20		80	0.995493
895	25			75	0.996473
902		25		75	0.996473
911	75			25	0.996473
919		25	75		0.996473
928			25	75	0.996473
942		75		25	0.996473
946		25		75	0.996473
961			25	75	0.996473
964			75	25	0.996473
968		25		75	0.996473
969	25		75		0.996473
980	83		16		0.994512
981		83		16	0.994512
982		16		83	0.994512
995			16	83	0.994512
999	20		80		0.995493
1012		75	25		0.996473
1026	75		25		0.996473
1039		83		16	0.994512
1090	16	83			0.994512
1096	16	83			0.994512
1327		50		50	1.0
1496		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain