SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene129

Length: 1737 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene129 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UBP16; UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin thiolesterase/ ubiquitin-specific protease/ zinc ion binding	-	-	45%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 16; Arabidopsis thaliana (Mouse-ear cress).	-	-	46%
Blast2go	protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	64%
Blast2go	flower development	GO:0009908	Biological Process	64%
Blast2go	leaf development	GO:0048366	Biological Process	64%
Blast2go	cell proliferation	GO:0008283	Biological Process	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	0.0	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SB51

Fln msg: your sequence is shorter than subject: 566 - 1008

Fln protein: EEDAHEFLRFAIDTMPIHMPC*S*WREGG*P*NTGDNTS*PWLFCGYLQSKIKCLKCQHISERYEKMMDLTVEIEGNIESLQDALGQFTASEILDGTNKYKCDRCKCYVKARKQLTVHEAPNILTIALKRFQSGKFGKLNKRVIFPEVLNMKPYMSGMGDKPPSYKLYAVVVHLDMMNASFSGHYVCYVKNLQGAWYKIDDSKVKQVELDRVLAQGAYMLLYSRSSPRPPAVAKNWMAHSLATVNVIPNTKAAKQPVLNSGPRGIGVLDGRYSSMASRAFNFEDYGFDCNGNPITGSGNIMYRDYPDMASSDSGSLFSYSDETSCSTESNRDSTSTDDYVETIFGDSGQPTSSGLGEDPYTMSSSNCYMKSSPPSLQTAYYFENDAYILDSGFSNQQLCDDVYHGTRKIDPELTPRPNPLSQDTDGLPDSLRKTASSYFFPPFPSSHVETGYFDPDLCSRRSDRLDYRTSNINNHSESLQFQNSVGVPDTADTGAYSSSGDFSIPAKSQYEKEKYPAGFLQEADRLNFDVTSRSFNAASSNFDYCFVRDTRTSDSTMPESFGPNR*

Protein Length: 567

Fln nts: GGAAGAAGATGCTCATGAATTTTTAAGGTTTGCTATTGACACTATGCCAATCCACATGCCTTGCTGAAGCTAGTGGAGAGAGGGCGGTTGACCATAGAACACAGGAGACAACACGTCGTGACCTTGGCTGTTTTGTGGCTATCTTCAGTCAAAAATAAAGTGTTTGAAGTGCCAGCACATATCTGAGCGTTATGAGAAAATGATGGATCTTACTGTGGAGATAGAAGGCAACATTGAATCTCTCCAAGATGCACTTGGACAATTCACAGCTTCTGAAATATTGGATGGCACAAATAAGTATAAATGTGACAGGTGCAAGTGCTACGTGAAGGCTAGAAAGCAGTTGACTGTCCATGAAGCTCCTAACATTCTTACCATTGCTCTCAAGAGGTTTCAGTCTGGGAAGTTTGGCAAACTCAACAAGCGTGTTATTTTTCCTGAAGTCCTGAACATGAAACCATACATGAGTGGTATGGGTGACAAACCACCATCATACAAGCTATATGCAGTCGTGGTGCATTTAGATATGATGAATGCTTCCTTTTCTGGGCATTATGTGTGTTACGTCAAGAATTTACAAGGGGCCTGGTACAAGATTGATGATAGCAAGGTAAAGCAGGTGGAGCTTGATAGGGTACTCGCACAAGGGGCATACATGCTTTTGTACTCTAGGTCTTCACCACGACCACCGGCTGTTGCGAAGAATTGGATGGCTCATTCCTTGGCAACAGTAAATGTCATCCCCAACACAAAAGCTGCCAAACAACCTGTGCTGAATAGTGGACCTCGAGGAATTGGTGTGCTTGATGGACGATATTCTTCAATGGCCTCCCGTGCATTTAATTTTGAGGATTATGGTTTTGACTGCAATGGTAACCCAATCACAGGAAGTGGGAACATAATGTATAGAGACTACCCTGATATGGCATCTAGTGATTCTGGATCCCTCTTCAGTTACTCGGATGAAACTTCTTGCAGCACAGAGAGCAATAGAGATTCAACTAGTACAGATGATTATGTTGAGACAATATTTGGAGATTCAGGACAACCCACCAGTTCTGGATTGGGTGAGGACCCTTATACAATGTCCAGTTCAAACTGTTATATGAAATCATCACCACCTTCTCTTCAAACAGCATATTATTTTGAAAATGATGCATATATCCTGGATTCTGGTTTTTCAAATCAGCAACTCTGTGATGACGTATATCATGGAACGAGGAAGATTGATCCTGAATTGACCCCTCGCCCCAATCCACTTTCTCAAGATACTGATGGACTACCAGATTCACTTAGGAAGACTGCTAGCAGCTATTTTTTCCCTCCCTTTCCATCAAGCCATGTAGAAACTGGTTATTTTGATCCTGACCTTTGTAGCAGACGTAGTGATCGGTTAGATTATAGGACTAGTAACATAAACAACCATTCGGAGTCTTTGCAATTTCAGAATTCAGTTGGGGTTCCAGATACAGCAGACACTGGAGCCTATAGCAGTAGTGGTGATTTTTCTATCCCAGCAAAATCACAATATGAGAAAGAGAAGTACCCGGCAGGATTTTTACAAGAAGCAGATAGGTTAAATTTTGATGTAACATCAAGATCTTTCAATGCAGCTTCGTCTAATTTTGATTATTGTTTTGTTCGTGACACAAGAACATCAGATTCAACTATGCCCGAGTCCTTTGGGCCCAACAGATAA___TTTAAGTGTAAATTCATATGCAAAATATGTTCCAGTCC

Fln Alignment:

sp_v1.1_unigene129___EEDAHEFLRFAIDTMPIHMPC*S*WREGG*P*NTGDNTS*PWLFCGYLQSKIKCLKCQHISERYEKMMDLTVEIEGNIESLQDALGQFTASEILDGTNKYKCDRCKCYVKARKQLTVHEAPNILTIALKRFQSGKFGKLNKRVIFPEVLNMKPYMSGMGDKPPSYKLYAVVVHLDMMNASFSGHYVCYVKNLQGAWYKIDDSKVKQVELDRVLAQGAYMLLYSRSSPRPPAVAKNWMAHSLATVNVIPNTKAAKQPVLNSGPRGIGVLDGRYSSMASRAFNFEDYGFDCNGNPITGSGNIMYRDY--------PDMAXXXXXXXXXXSDETSCSTESNRDSTSTDDYVETIFGDSGQPTSSGLGEDPYTMSSSNCYMKSSPP
Q9SB51_____________EEDAHEFLRFVVDTMQSVCIKASEY-DMTKSSKLEDTTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGDISTLDDALRRFTRTEILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKFGKLNKLIRFPETLDLAPYVSGGSEKSHDYKLYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDSTVVTSDVERILTKGAYMLFYARCTPTPPRLAVCTKTEASNKKSRVPLPKANEKSTIS---RSVSTSSPELSS-------------NTPGGGRSGNIQSFYSSFQRLQKILEEDSASDSSSLFDSNSDECSCST----DSTSMDDFADFIFGDH-QGRAHGQSETPSPTSSSS---SSSPP

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
96	66		33		1.0
376		11		88	0.999937
380	88		11		0.999937
381	88		11		0.999937
383	88	11			0.999937
386		88	11		0.999937
605	16			83	0.994512
606			14	85	0.993533
612	85	14			0.993533
613		14	85		0.993533
619		14	85		0.993533
620	14		85		0.993533
621		14		85	0.993533
624		14		85	0.993533
655		12	87		0.992554
656		12		87	0.992554
698	83	16			0.994512
699	83	16			0.994512
700		16		83	0.994512
701	16	83			0.994512
849	10			90	0.90298
1413	20		80		0.995493
1602	50			50	1.0
1603		50	50		1.0
1604	50	50			1.0
1605	50		50		1.0
1606	50			50	1.0
1609		50		50	1.0
1611			66	33	0.997452
1613		66		33	0.997452
1614	66		33		0.997452
1615	66			33	0.997452
1616			66	33	0.997452
1621		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain