SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene111

Length: 1168 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene111

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PTP1; PTP1 (PROTEIN TYROSINE PHOSPHATASE 1); protein tyrosine phosphatase	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein tyrosine phosphatase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-tyrosine-phosphatase.	EC:3.1.3.48	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	protein tyrosine phosphatase activity	GO:0004725	Molecular Function	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Blast2go	Protein-tyrosine phosphatase, receptor/non-receptor type	IPR000242	-	76%
Blast2go	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	76%
Blast2go	Protein-tyrosine phosphatase, catalytic	IPR003595	-	76%
Blast2go	Protein-tyrosine phosphatase, active site	IPR016130	-	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZG5

Fln msg: your sequence is shorter than subject: 225 - 358

Fln protein: GNDYINASYIVSSASENIPKFIATQGPLQETTEDFWEMIIQHRCPVIVMLTRLIDNYKTVKCADYFPAEEESRIFGRIFVANKSLKISQNSIALRFLEVKYIESEEPPLSVLHLQYPDWPDHGVPNTTQSVRELVKRLYLIPPKLGPFVVHCSAGIGRTGAFCTISHTIHRILEGDVSALDISATIRQFRNQRLGMVQTQDQYIFCYDAVVHELEDLISQQNKS*

Protein Length: 226

Fln nts: CAGGGAATGACTACATCAATGCCAGCTACATTGTGAGCTCTGCAAGTGAAAATATTCCAAAGTTTATAGCCACACAGGGTCCTTTACAAGAGACAACAGAAGACTTTTGGGAGATGATAATTCAGCATCGTTGTCCTGTAATTGTTATGCTCACTCGGTTGATTGACAACTACAAGACGGTAAAGTGTGCTGATTACTTTCCAGCAGAGGAGGAGTCTAGAATATTTGGAAGAATATTTGTGGCAAACAAAAGTTTGAAGATAAGTCAAAATTCAATAGCACTACGATTTTTGGAGGTGAAGTATATAGAGTCAGAGGAGCCTCCCTTGTCTGTTCTTCATCTTCAGTATCCTGACTGGCCAGACCATGGAGTTCCTAACACTACTCAATCAGTCCGTGAACTTGTTAAAAGGCTATATTTGATACCTCCAAAGTTGGGTCCGTTTGTTGTACATTGCAGTGCTGGTATAGGAAGAACTGGTGCATTTTGTACCATAAGTCACACCATTCACAGAATTCTGGAAGGTGATGTATCTGCCCTGGATATCAGCGCAACAATACGTCAATTCAGAAACCAGCGCTTAGGCATGGTTCAGACCCAGGATCAATACATTTTTTGCTATGATGCTGTGGTTCATGAGCTTGAAGATCTCATCTCTCAGCAAAACAAAAGCTAA___AGCCTATGGGAGGTACTGATTATTCTTCATCAGATCAACAATAACATTTGTTATTTGGTGCACAATTATCCATGATTCAATTCGTTCCCATCTCTGCCTCCTTTACAAAGGAGAGTTCTACCAGAAGGGGTCCATGGACTGGAATCTTTGTGGATCGCCTCTATAAGTGAATATTTAAACATTGTAGTCCATTTTGTAGGAAAATCTTGATTTGCATTGACAAGAGTAATCTGAATCTTATATTCTTCTCGCAAATTATGCTTGACAAATTACCGTATTGTACGTCTTCATTTATTCCGTAAATGCATGCTAACATCTGCTGCAGGGTAAATAATCTCATTCATTCACCTTTGGCATGAACACAATCTGAAGAATGTCTATGGAATAATTTAATTTTACTAATGGATCAGAGAGGCTGAAGCAAGGTATTCATGCTTGTAATGGGACTGGGAAGAAAGGACAGATATCATACATTACATTGACTTACGTTT

Fln Alignment:

sp_v1.1_unigene111___GNDYINASYIVSSASENIPKFIATQGPLQETTEDFWEMIIQHRCPVIVMLTRLIDNYKTVKCADYFPAEEESRIFGRIFVANKSLKISQNSIALRFLEVKYIESEEPPLSVLHLQYPDWPDHGVPNTTQSVRELVKRLYLIPPKLGPFVVHCSAGIGRTGAFCTISHTIHRILEGDVSALDISATIRQFRNQRLGMVQTQDQYIFCYDAVVHELEDLISQQNKS
A9NZG5_____________GSDYINASYIVNPSSENLPKFIATQGPLPETSEDFWQMIIQHRCPVIVMLTRLIDNYKTLKCADYFPAEEESRIFGRISVTNKSLKISQNSIALRFLEVKYIESEEPPLSVLHLQYPDWPDHGVPNTTESVRELVKRLYLVPPSLGPFVVHCSAGIGRTGAFCTISHTIHRILEGDVSALDLSTTIRQFRNQRIGMVQTQDQYIFCYAAVVHELEDLVSHQNKS

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
328	12	87			0.992554
330			12	87	0.992554
331		12	87		0.992554
334	12			87	0.992554
355		12		87	0.992554
394	87	12			0.992554
445	12		87		0.992554
551	83		16		0.999991
643			86	13	0.999973
688	10		90		0.90298
689		10	90		0.90298
690	88			11	0.923564
691			88	11	0.923564
694	87		12		0.992554
700		12		87	0.992554
702		12		87	0.992554
705			38	61	1.0
708	61		38		1.0
710		61	38		1.0
712		38	61		1.0
713	61	38			1.0
715		61		38	1.0
716	61		38		1.0
717	61		38		1.0
719	61			38	1.0
720	61		38		1.0
725	61			38	1.0
771	81		18		1.0
775		81	18		1.0
781		81		18	1.0
782		81	18		1.0
783			18	81	1.0
784		18		81	1.0
786	81		18		1.0
787		81		18	1.0
788	81	18			1.0
790	81	18			1.0
791			81	18	1.0
792		18	81		1.0
800			9	90	0.999872
801	90			9	0.999872
803		90	9		0.999872
804	90			9	0.999872
807	90	9			0.999872
808		9	90		0.999872
809			90	9	0.999872
810			90	9	0.999872
812			9	90	0.999872
814		90		9	0.999872
815	90		9		0.999872
818		9	90		0.999872
822		9	90		0.999872
823	9		90		0.999872

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain