SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene51

Length: 2462 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene51
ATGGGAAACATGGACGGGAGACCCCTATTTGTTGACCATGTCAGTACCAGAAACGTTTTATATATAAACTTGCGATTCCCCAAATTTCGATAGCTAAAGAATCCACAGATATCGATGGACTGTTAGTCTGCAGAGGGGCTGAACTAACCTGCTTTTACTTGATCCCGTCAATTGAAGTGTTAATTGTTTAACATGGAGCTGAAGGGCAAAGTTGCATTAGTCACTGGAGGAGGAGCTGGAATCGGACGAGCTCTTTCTCTTGCTTTGGCAAAGAAAGGTGTTCGTATGACAATTCTTGATTATTCAGAAACATCTGGTAAAGAAGTTGTTGGTGTTCTGGAAGAAGAGCATGCCAAGTTCTATCGAGATCTGGAAAAGCCCACAGCAGCATTTATTAGATGTGATGTTGCTAATCCAGGGGATCTTGCATCTGCTTTTGTGAAGCATTTGGACACATTTGGAAGACTAGACATTTGCATTAACAATGCTGGTATAGCTGATGAGATACCTTTTGTTAAGGATAAGAGTAGGGATGGAAGTGGTCCATGGAGGCGTACTATTGACATAAATCTAATGGCTGTCATTGACTGTACTCGCTTGGCAATTCAATCTATGGAAGCAGGAGGCCACGATGGAACAATTTTGAATATTGGATCTGCAGCGGGGCTTTATCCATCATACAATATGCCTATATATGGTGCATCAAAAGGTGGTGTGGTTATGTTTTCAAGATCCCTTAGCACTTACAAACGTAAAGGCATTCGTGTAAATGTACTGTGTCCTGAGTTTGTGGACACTGACTTGGCCAAGAAAGTGCAGCCTAGGGTTATTGAGCAGTTAGGAGGGTTCCTACCTATGGATATGATTATTAAAGGTGCTCTTGAGCTTATAGAAGATGAGACAAAGGCTGGTCAATGCCTCTGGATAACAAAACGAAGAGGGTTGGAATATTGGCCAACTCCTGAAGAGAAGAAAAATTCCTTGCCAAATTTTGGACGCGTGGAGAATAGTATCTCATATAGACCTCAAGCAAATGTTGAGATTGTGTCAACTATTCCCGGCACTTTCGAGAAAGTAGTGGTTCACAGACTGGATAACAATTTTCGACAAGCTACCAAAATAGAGAGAACATACTTGAAGCTGCCCATTAGGCCTGGTCATGTTCTTATGAAAAATATATATGCAGGAGTAAATGCCAGTGATATAAATTACAGTTCTGGGCGTTATTTTGGGAATGAGAAGGAAGCTAGTTCTCGTCTCCCGTTTGATGCAGGATTTGAGGCTGTTGGTTTAGTTGTAGCAATCGGTGATTTTGTTGAAGGTTTGACTATAGGTGCACCTGTGGCAGCTATGTCATTTGGTGCATATGCTGAATTCAGTGTGGTTCCAGCAAAACATGTTATACCAGTTCCAAGACTAATTCCTGAAGTGGTGGCAATGCTTACATCAGGTCTCACAGCATCAATTGGATTAGAGCAGGCAGGAAAGATGGAATCTCGTCAGACAGTTCTAGTCACAGCCGCTGCTGGGGGGACTGGACAGTTTGCTGTTCAGTTGGCAAAAATAGCAGGGAATAAGGTGGTTGCAACTTGTGGAGGAACACAAAAGGCGGCCCTTCTGAAGGACTTTGGTGTTGATAGGGTGATTGACTACAGAAAGGAAGATATTAAATTGGTCTTGAAAAAGGAGTTTCCAAAAGGCGTTGATATTGTATATGAATCTGTTGGAGGAGAAATGTTTAATACATGCTTAAATGCCCTTGCAGTTCATGGTCATCTTGTTGTTATCGGGATGATCTCTCAGTATCAGGGAGAGAGCGGATGGAAGCCATCAAACTATACTGGTCTTTGTGAGAAGATTCTCTCTAAGAGTCAATCGGTGGTTGGCTTTTTCTTAATGGATTACCCTCATTTATGGCGTGCACATTTGGAAAGACTTCACAACCTTTATACTACTGGAAAGCTGAAGATTGCATTAGATCCAATGCAGTTTTTGGGTGTAAAGTCAGTTTCCAATGCTGTTGAATATCTCCACTCTGGTCAAAGCATAGGCAAGGTGGTTGTCTGCATAGATCCAAGCGTCACTCAAGTAACTGCACGGTTGTAGGTGTGGAAATTTGAACTATTCATGTATCCGCTGAAGCATAAATGTGAAATGCCTGCAGTTGAGCTCTAGTGATTTCTTCAATGCTTATTCAGTTATTTCTCATCACTCTTTTCTAATGCTTAAAGATTATTAGTGTATCCATGTCAGTATAATTATAATTGTAACTCATTTAAAATGGTAACAGTGGCAACAAACAGTGTAGGTAGTGGTGTAAAAGCAATAGTAAAAGCAAGAATTGTGGCAAGCTTGTTCCTCTGCAAGTTGGTAGTTGGTGTAAATAAATCTCAAAGGCATGAGAGGACATTGTTAAGTTGGAACATGATGATATATACTATATGAAAAAATTCTGTATTTCC

Ace file of the UniGene sp_v1.1_unigene51 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alcohol dehydrogenase, putative (EC:1.1.1.141 1.6.5.5); K07119	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	arp protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	76%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	76%
Blast2go	response to salt stress	GO:0009651	Biological Process	76%
Blast2go	catalytic activity	GO:0003824	Molecular Function	76%
Blast2go	peroxisome	GO:0005777	Cellular Component	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Blast2go	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	76%
Blast2go	Short-chain dehydrogenase/reductase SDR	IPR002198	-	76%
Blast2go	Glucose/ribitol dehydrogenase	IPR002347	-	76%
Blast2go	GroES-like	IPR011032	-	76%
Blast2go	Alcohol dehydrogenase, C-terminal	IPR013149	-	76%
Blast2go	Alcohol dehydrogenase GroES-like	IPR013154	-	76%
Blast2go	NAD(P)-binding domain	IPR016040	-	76%
Blast2go	Polyketide synthase, enoylreductase	IPR020843	-	76%
Blast2go	Short-chain dehydrogenase/reductase, conserved site	IPR020904	-	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0J2

Fln msg: your sequence is longer than subject: 638 - 344

Fln protein: MELKGKVALVTGGGAGIGRALSLALAKKGVRMTILDYSETSGKEVVGVLEEEHAKFYRDLEKPTAAFIRCDVANPGDLASAFVKHLDTFGRLDICINNAGIADEIPFVKDKSRDGSGPWRRTIDINLMAVIDCTRLAIQSMEAGGHDGTILNIGSAAGLYPSYNMPIYGASKGGVVMFSRSLSTYKRKGIRVNVLCPEFVDTDLAKKVQPRVIEQLGGFLPMDMIIKGALELIEDETKAGQCLWITKRRGLEYWPTPEEKKNSLPNFGRVENSISYRPQANVEIVSTIPGTFEKVVVHRLDNNFRQATKIERTYLKLPIRPGHVLMKNIYAGVNASDINYSSGRYFGNEKEASSRLPFDAGFEAVGLVVAIGDFVEGLTIGAPVAAMSFGAYAEFSVVPAKHVIPVPRLIPEVVAMLTSGLTASIGLEQAGKMESRQTVLVTAAAGGTGQFAVQLAKIAGNKVVATCGGTQKAALLKDFGVDRVIDYRKEDIKLVLKKEFPKGVDIVYESVGGEMFNTCLNALAVHGHLVVIGMISQYQGESGWKPSNYTGLCEKILSKSQSVVGFFLMDYPHLWRAHLERLHNLYTTGKLKIALDPMQFLGVKSVSNAVEYLHSGQSIGKVVVCIDPSVTQVTARL*

Protein Length: 639

Fln nts: ATGGGAAACATGGACGGGAGACCCCTATTTGTTGACCATGTCAGTACCAGAAACGTTTTATATATAAACTTGCGATTCCCCAAATTTCGATAGCTAAAGAATCCACAGATATCGATGGACTGTTAGTCTGCAGAGGGGCTGAACTAACCTGCTTTTACTTGATCCCGTCAATTGAAGTGTTAATTGTTTAAC_-_ATGGAGCTGAAGGGCAAAGTTGCATTAGTCACTGGAGGAGGAGCTGGAATCGGACGAGCTCTTTCTCTTGCTTTGGCAAAGAAAGGTGTTCGTATGACAATTCTTGATTATTCAGAAACATCTGGTAAAGAAGTTGTTGGTGTTCTGGAAGAAGAGCATGCCAAGTTCTATCGAGATCTGGAAAAGCCCACAGCAGCATTTATTAGATGTGATGTTGCTAATCCAGGGGATCTTGCATCTGCTTTTGTGAAGCATTTGGACACATTTGGAAGACTAGACATTTGCATTAACAATGCTGGTATAGCTGATGAGATACCTTTTGTTAAGGATAAGAGTAGGGATGGAAGTGGTCCATGGAGGCGTACTATTGACATAAATCTAATGGCTGTCATTGACTGTACTCGCTTGGCAATTCAATCTATGGAAGCAGGAGGCCACGATGGAACAATTTTGAATATTGGATCTGCAGCGGGGCTTTATCCATCATACAATATGCCTATATATGGTGCATCAAAAGGTGGTGTGGTTATGTTTTCAAGATCCCTTAGCACTTACAAACGTAAAGGCATTCGTGTAAATGTACTGTGTCCTGAGTTTGTGGACACTGACTTGGCCAAGAAAGTGCAGCCTAGGGTTATTGAGCAGTTAGGAGGGTTCCTACCTATGGATATGATTATTAAAGGTGCTCTTGAGCTTATAGAAGATGAGACAAAGGCTGGTCAATGCCTCTGGATAACAAAACGAAGAGGGTTGGAATATTGGCCAACTCCTGAAGAGAAGAAAAATTCCTTGCCAAATTTTGGACGCGTGGAGAATAGTATCTCATATAGACCTCAAGCAAATGTTGAGATTGTGTCAACTATTCCCGGCACTTTCGAGAAAGTAGTGGTTCACAGACTGGATAACAATTTTCGACAAGCTACCAAAATAGAGAGAACATACTTGAAGCTGCCCATTAGGCCTGGTCATGTTCTTATGAAAAATATATATGCAGGAGTAAATGCCAGTGATATAAATTACAGTTCTGGGCGTTATTTTGGGAATGAGAAGGAAGCTAGTTCTCGTCTCCCGTTTGATGCAGGATTTGAGGCTGTTGGTTTAGTTGTAGCAATCGGTGATTTTGTTGAAGGTTTGACTATAGGTGCACCTGTGGCAGCTATGTCATTTGGTGCATATGCTGAATTCAGTGTGGTTCCAGCAAAACATGTTATACCAGTTCCAAGACTAATTCCTGAAGTGGTGGCAATGCTTACATCAGGTCTCACAGCATCAATTGGATTAGAGCAGGCAGGAAAGATGGAATCTCGTCAGACAGTTCTAGTCACAGCCGCTGCTGGGGGGACTGGACAGTTTGCTGTTCAGTTGGCAAAAATAGCAGGGAATAAGGTGGTTGCAACTTGTGGAGGAACACAAAAGGCGGCCCTTCTGAAGGACTTTGGTGTTGATAGGGTGATTGACTACAGAAAGGAAGATATTAAATTGGTCTTGAAAAAGGAGTTTCCAAAAGGCGTTGATATTGTATATGAATCTGTTGGAGGAGAAATGTTTAATACATGCTTAAATGCCCTTGCAGTTCATGGTCATCTTGTTGTTATCGGGATGATCTCTCAGTATCAGGGAGAGAGCGGATGGAAGCCATCAAACTATACTGGTCTTTGTGAGAAGATTCTCTCTAAGAGTCAATCGGTGGTTGGCTTTTTCTTAATGGATTACCCTCATTTATGGCGTGCACATTTGGAAAGACTTCACAACCTTTATACTACTGGAAAGCTGAAGATTGCATTAGATCCAATGCAGTTTTTGGGTGTAAAGTCAGTTTCCAATGCTGTTGAATATCTCCACTCTGGTCAAAGCATAGGCAAGGTGGTTGTCTGCATAGATCCAAGCGTCACTCAAGTAACTGCACGGTTGTAG___GTGTGGAAATTTGAACTATTCATGTATCCGCTGAAGCATAAATGTGAAATGCCTGCAGTTGAGCTCTAGTGATTTCTTCAATGCTTATTCAGTTATTTCTCATCACTCTTTTCTAATGCTTAAAGATTATTAGTGTATCCATGTCAGTATAATTATAATTGTAACTCATTTAAAATGGTAACAGTGGCAACAAACAGTGTAGGTAGTGGTGTAAAAGCAATAGTAAAAGCAAGAATTGTGGCAAGCTTGTTCCTCTGCAAGTTGGTAGTTGGTGTAAATAAATCTCAAAGGCATGAGAGGACATTGTTAAGTTGGAACATGATGATATATACTATATGAAAAAATTCTGTATTTCC

Fln Alignment:

sp_v1.1_unigene51___MSFGAYAEFSVVPAKHVIPVPRLIPEVVAMLTS-----GLTASIGLEQAGKMESRQTVLVTAAAGGTGQFAVQLAKIAGNKVVATCGGTQKAALLKD-FGVDRVIDYRKE-DIKLVLKKEFPKGVDIVYESVGGEMFNTCLNALAVHGHLVVIGMISQYQGESGWKPSNYTGLCEKILSKSQSVVGFFLMDYPHLWRAHLERLHNLYTTGKLKIALDPMQFLGVKSVSNAVEYLHSGQSIGKVVVCI
A9P0J2____________MGITGWEEYSIIPGGNQLQKIRYTDIPLSYYLGILGMPGLTAYVGFYDLSSPKAGEKVFISAASGAVGQLVGQFAKMHGCYVVGSAGSKQKVELLKDRLGFDDAFNYKEELDLHATLKRYFPNGIDIYFENVGSKMLEAVLENMNLHGRIAACGMISEYNLEEGQGIRNIS----RVISKRIKIQGFIIHDYWHMYPQFVEKVRGSIKEGKIVYVEDIAD--GLENAPAAFVGLFEGKNIGKQVVRI

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
2071		10		90	0.90298
2099	83		16		0.999991
2111	16	83			0.999991
2150	83			16	0.999991
2211		11	88		0.999952
2218		88		11	0.999952
2219			11	88	0.999952
2220	11	88			0.999952
2223		88	11		0.999952
2224	11	88			0.999952
2225		11	76	5	0.999894
2227			20	80	1.0
2228		13		86	0.999973
2230	20	80			1.0
2233		80	20		1.0
2237			14	85	0.999981
2238	14	85			0.999981
2240			14	85	0.999981
2252			25	75	1.0
2253		25	75		1.0
2257		75	25		1.0
2258			28	71	1.0
2260		28		71	1.0
2261	28		71		1.0
2264	28	71			1.0
2266			28	71	1.0
2364	33			66	0.997452
2369		33		66	0.997452
2370	33			66	0.997452
2371		66	33		0.997452
2372		33		66	0.997452
2373		33		66	0.997452
2374	33			66	0.997452
2377		66	33		0.997452
2379	66	33			0.997452
2380	33			66	0.997452
2384	66	33			0.997452
2385	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain