SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210024

Length: 251 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene210024
GCTTATTGGTGACATTCCTATAACTCTTACCCATTTGAGTAAACTAGTTCAACTAGATTTTAGTAATAATAAATTAAGTGGTAGTATTCCTATAACTCTTACTAATTTGAGTAAATTAGTTGAATTAGATTTTAGTAATAATATATTAAGTGGTAGCATCCCTAAAGCCATTATTAATTTAAAGAACCTTTACTCTCTTGACCTTTCAAACAATAATTTGACTGGCACAATTCCAAGAGCCATAGGAAAGC

Ace file of the UniGene sp_v3.0_unigene210024 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	-	-	2.0e-05	45%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	47%

Source	Gene names
Sma3	At2g42800; Cf-5; GSVIVT00002006001; GSVIVT00017157001; GSVIVT00017165001; GSVIVT00023226001; GSVIVT00023452001; GSVIVT00026427001; GSVIVT00029738001; Hcr2-0B; OsI_06218; OsI_06370; OsJ_05738; P0437H03.136; PHYPADRAFT_10720; PHYPADRAFT_227761; POPTRDRAFT_5

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G42800.1	AtRLP29, RLP29 receptor like protein 29 chr2:17808157-17809545 REVERSE LENGTH=462	1.0e-11	51%
RefSeq	Arabidopsis thaliana	NP_181808.1	receptor like protein 29 [Arabidopsis thaliana]	1.0e-11	51%
RefSeq	Populus trichocarpa	XP_002301914.1	predicted protein [Populus trichocarpa]	1.0e-13	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 690 aas, your sequence is shorter than subject: 83 - 998

Fln protein: LIGDIPITLTHLSKLVQLDFSNNKLSGSIPITLTNLSKLVELDFSNNILSGSIPKAIINLKNLYSLDLSNNNLTGTIPRAIGK

Protein Length: 84

Fln nts: GCTTATTGGTGACATTCCTATAACTCTTACCCATTTGAGTAAACTAGTTCAACTAGATTTTAGTAATAATAAATTAAGTGGTAGTATTCCTATAACTCTTACTAATTTGAGTAAATTAGTTGAATTAGATTTTAGTAATAATATATTAAGTGGTAGCATCCCTAAAGCCATTATTAATTTAAAGAACCTTTACTCTCTTGACCTTTCAAACAATAATTTGACTGGCACAATTCCAAGAGCCATAGGAAAGC

Fln Alignment:

uma_euler_20247___LIGDIPITLTHLSKLVQLDFSNNKLSGSIPITLTNLSKLVELDFSNNILSGSIPKAIIXXXXXXXXXXXXXXLTGTIPRAIG
Q19AV8________________LVGEIPETLGNLAELTNLDLSINRLSGSIPESITKLDKVAQIELYQNLLSGPIPVAMGELKALKRFDASMNMLNGSIPAGLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain