SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209781

Length: 367 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene209781
TCGCGTTATCTACTGCAGTTCACATACCTTAACCAGGTTTCCTGGACCGCATTTAGACTAATGCGAAAGTAATATAATCTCTTCTCCAGCAAAGTTGTTCAGTGGTTCTTCCCCACCTTATTCGTGATTAGTATCATCTAAATACCTGCAGATCCATCAGCAATGGACAAAATACAGCACAAGCAAGTCAATGTTGGAGGGCTCAATTTACATGTTGCAGAGATTGGATCAGGCCCGGCTGTGCTGTTACTGCATGGATTTCCAGAGATATGGTATTCATGGCGCCATCAGATGATAGCATTGGCAGAAGCGGGGTTGCGTGCAATTGCTTCCGATTTTCGAGGTTATGGACTCTCTGATCAGCCCT

Ace file of the UniGene sp_v3.0_unigene209781 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Epoxide hydrolase n=2 Tax=Nicotiana RepID=Q9ZP87_TOBAC	-	-	2.0e-23	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Epoxide hydrolase	-	-	1.4013e-43	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.246e-14	-
Sma3	Microsomal epoxide hydrolase.	EC:3.3.2.9	-	3.262e-07	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		3.262e-07	%

Source	Gene names
Sma3	AT4g02340; ATsEH; At2g26740; At2g26750; At3g05600; At4g02340; Eui2t; F18C1.13; GEPH; GSVIVT00010274001; GSVIVT00010275001; GSVIVT00022685001; GSVIVT00025831001; GSVIVT00025832001; GSVIVT00025834001; GSVIVT00028031001; GSVIVT00033031001; GSVIVT00033032001;

Source	GOs	Term	Type	Identity
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	epoxide hydrolase activity	GO:0004301	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	cis-stilbene-oxide hydrolase activity	GO:0033961	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Epoxide hydrolase-like	IPR000639	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02340.1	alpha/beta-Hydrolases superfamily protein chr4:1035722-1037403 FORWARD LENGTH=324	6.0e-25	59%
RefSeq	Arabidopsis thaliana	NP_567228.1	putative epoxide hydrolase [Arabidopsis thaliana]	8.0e-25	59%
RefSeq	Populus trichocarpa	XP_002317224.1	predicted protein, partial [Populus trichocarpa]	2.0e-27	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVJ5

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 68 - 314

Fln protein: MDKIQHKQVNVGGLNLHVAEIGSGPAVLLLHGFPEIWYSWRHQMIALAEAGLRAIASDFRGYGLSDQP

Protein Length: 69

Fln nts: TCGCGTTATCTACTGCAGTTCACATACCTTAACCAGGTTTCCTGGACCGCATTTAGACTAATGCGAAAGTAATATAATCTCTTCTCCAGCAAAGTTGTTCAGTGGTTCTTCCCCACCTTATTCGTGATTAGTATCATCTAAATACCTGCAGATCCATCAGCA_-_ATGGACAAAATACAGCACAAGCAAGTCAATGTTGGAGGGCTCAATTTACATGTTGCAGAGATTGGATCAGGCCCGGCTGTGCTGTTACTGCATGGATTTCCAGAGATATGGTATTCATGGCGCCATCAGATGATAGCATTGGCAGAAGCGGGGTTGCGTGCAATTGCTTCCGATTTTCGAGGTTATGGACTCTCTGATCAGCCCT

Fln Alignment:

Tip_euler_2593___KIQHKQVNVGGLNLHVAEIGSGPAVLLLHGFPEIWYSWRHQMIALAEAGLRAIASDFRGYGLSDQP
A9NVJ5________________KIQHKQVDVGGLNLHVAEIGSGPTVLLLHGFPEIWYSWRHQMIALAEAGFHAIAPDFRGYGLSDQP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain