SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209402

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene209402
TTGTTGATGATTATACTAGAATGATGTGGGTATATTGTATAAAGCTTAAATCTGAAGCATTTGGGTGTTTTAAGAATTTCAAAGCCCTTGTGGAAAATGAAAAAGAATAAAAGATGAAGTGTCTTAGAATAGATGGAGGAGAATTTACTTCCAAGGAATTCAATGATTTCTGTAATCTACATGGAATCAAAAGAGAACTTTCTGTAGCTAGAACTCCTAAAC

Ace file of the UniGene sp_v3.0_unigene209402

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol [Ipomoea batatas]	-	-	4.0e-16	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	At2g05960; LOC_Os03g26290; LOC_Os10g01750; LOC_Os12g05520; LOC_Os12g44200; OSJNBa0013O08.17; OSJNBa0053E05.7; OSJNBa0065H03.10; Os10g0106900; Rtsp-1AA; SDM1_42t00010; SDM1_47t00010; T2O9.150; TnInt1; VITISV_001281;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 174 aas, your sequence is shorter than subject: 73 - 407

Fln protein: VDDYTRMMWVYCIKLKSEAFGCFKNFKALVENEKE*KMKCLRIDGGEFTSKEFNDFCNLHGIKRELSVARTPK

Protein Length: 74

Fln nts: TTGTTGATGATTATACTAGAATGATGTGGGTATATTGTATAAAGCTTAAATCTGAAGCATTTGGGTGTTTTAAGAATTTCAAAGCCCTTGTGGAAAATGAAAAAGAATAAAAGATGAAGTGTCTTAGAATAGATGGAGGAGAATTTACTTCCAAGGAATTCAATGATTTCTGTAATCTACATGGAATCAAAAGAGAACTTTCTGTAGCTAGAACTCCTAAAC

Fln Alignment:

Root_euler_937___VDDYTRMMWVYCIKLKSEAFGCFKNFKALVENEKE*KMKCLRIDGG-EFTSKEFNDFCNLHGIKRELSVARTPK
B8LKX7________________IDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain