SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene209215

Length: 387 nt

UniGene Fasta

>sp_v3.0_unigene209215
CAGGCCTCAACCTGAGAAGATCATTCTCGACAAATATGAAGACACCATGAGCAATTTGGGTGCAATTTTAGCTTCTGGTATGTTAGATGCAGGTGGTCGGACTCAATTATGAACTGAAGGTCCCAAAATATGAGTTTCTTTCACATGCCATGCCCTCATTATTTGAGTACCCTCATCCTACAACACCTCCAACAACAACTTGTGCAGTAAAATTGCCAACTGCTGCTTTGTCTACAGGAGCAAAGGTTAAAGCTAGAGCAAAGAAAGAAACAGATCAGAAAACTGCTATGGATGAGGGAAACATTTCTGGTGAAGCAGGACCAATGAAAGGCCCAAAATCTAGTGATAAGGAGGGGGAAGCAATGCAGGTGGATAATGTATCTGAAA

Ace file of the UniGene sp_v3.0_unigene209215

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit (Fragment) n=1 Tax=Gossypium hirsutum RepID=A6MUT2_GOSHI	-	-	2.0e-21	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	26S proteasome regulatory subunit	-	-	1.215e-06	-

Source	Gene names
Sma3	At1g04810; At2g32730; B0402A04.3; F13M7.20; GSVIVT00009324001; GSVIVT00031868001; OSJNBa0060N03.12; Os04g0608500; Os08g0224700; OsI_17319; OsI_28284; OsJ_16095; OsJ_26464; OsRPN2a; P0494D11.3; POPTRDRAFT_577415; POPTRDRAFT_829819; RPN2a; RPN2b; VITISV_000

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32730.1	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit chr2:13880189-13885464 FORWARD LENGTH=1004	2.0e-25	59%
RefSeq	Arabidopsis thaliana	NP_180832.1	26S proteasome regulatory subunit N2 [Arabidopsis thaliana]	2.0e-25	59%
RefSeq	Populus trichocarpa	XP_002323770.1	predicted protein [Populus trichocarpa]	1.0e-24	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 100 aas, your sequence is shorter than subject: 129 - 773

Fln protein: RPQPEKIILDKYEDTMSNLGAILASGMLDAxxxxLNYELKVPKYEFLSHAMPSLFEYPHPTTPPTTTCAVKLPTAALSTGAKVKARAKKETDQKTAMDEGNISGEAGPMKGPKSSDKEGEAMQVDNVSE

Protein Length: 130

Fln nts: CAGGCCTCAACCTGAGAAGATCATTCTCGACAAATATGAAGACACCATGAGCAATTTGGGTGCAATTTTAGCTTCTGGTATGTTAGATGCAxxxxxxxxxxxxCTCAATTATGAACTGAAGGTCCCAAAATATGAGTTTCTTTCACATGCCATGCCCTCATTATTTGAGTACCCTCATCCTACAACACCTCCAACAACAACTTGTGCAGTAAAATTGCCAACTGCTGCTTTGTCTACAGGAGCAAAGGTTAAAGCTAGAGCAAAGAAAGAAACAGATCAGAAAACTGCTATGGATGAGGGAAACATTTCTGGTGAAGCAGGACCAATGAAAGGCCCAAAATCTAGTGATAAGGAGGGGGAAGCAATGCAGGTGGATAATGTATCTGAAA

Fln Alignment:

inia_euler_1647___RPQPEKIILDKYEDTMSNLGAILASGMLDAGGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVGLNYELKVPKYEFLSHAMPSLFEYPHXXXXXXXXCAVKLPTAALSTGAKVKARAKKETDQKTAMDEGNISGEAGPMKGPKSSDKEGEAMQVDNVSE
B8LQS7________________RRQLEKIILDKHEDTMSKMGAILASGILDAGGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTTTSAVKLPTAVLSTSAKAKARAKKETDQKTAMDEGNISGEAGPIKGSKSSDKEGEAIQLDNASE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain