SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208989

Length: 209 nt

UniGene Fasta

>sp_v3.0_unigene208989
CAAAACTTGCAGCAGGACTCTGGGATTGTCTTGTCAAGTATAGATCAACAGTACCAAAGTTTCCTCAGACAGAAACTTGTGATCTGCTCATTGTTGACAGATCGATTGATCAAATTGCTCCAGTGATACATGAATGGACATATGATGCTATGTGTCATGATCTATTGAATATGGAAGGAAATAAGTATGTTTATGAGATGACTACTCAT

Ace file of the UniGene sp_v3.0_unigene208989

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNARE-interacting protein KEULE n=4 Tax=Andropogoneae RepID=B6SHD7_MAIZE	-	-	2.0e-27	77%
FL-Next	sp=SNARE-interacting protein KEULE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%
Sma3	SNARE-interacting protein KEULE	-	-	2.485e-13	-

Source	Gene names
Sma3	At1g02010; At1g12360; At4g12120; F16J13.190; F22M8.14; F5O11.8; GSVIVT00013316001; GSVIVT00018124001; GSVIVT00026344001; KEU; LOC_Os04g18030; LOC_Os06g04450; OSJNBa0032B23.7; Os04g0252400; Os06g0135900; OsI_07088; OsI_15097; OsI_21529; OsJ_06593; OsJ_1404

Source	GOs	Term	Type	Identity
Sma3	peripheral to membrane of membrane fraction	GO:0000300	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	vesicle docking involved in exocytosis	GO:0006904	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Sec1-like protein	IPR001619	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12360.1	KEU Sec1/munc18-like (SM) proteins superfamily chr1:4201172-4206144 FORWARD LENGTH=666	6.0e-33	79%
RefSeq	Arabidopsis thaliana	NP_563905.1	SNARE-interacting protein KEULE [Arabidopsis thaliana]	7.0e-33	79%
RefSeq	Populus trichocarpa	XP_002329890.1	predicted protein [Populus trichocarpa]	7.0e-33	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5X3

Fln msg: Distance to subject end: 370 aas, your sequence is shorter than subject: 69 - 666

Fln protein: KLAAGLWDCLVKYRSTVPKFPQTETCDLLIVDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVYEMTTH

Protein Length: 70

Fln nts: CAAAACTTGCAGCAGGACTCTGGGATTGTCTTGTCAAGTATAGATCAACAGTACCAAAGTTTCCTCAGACAGAAACTTGTGATCTGCTCATTGTTGACAGATCGATTGATCAAATTGCTCCAGTGATACATGAATGGACATATGATGCTATGTGTCATGATCTATTGAATATGGAAGGAAATAAGTATGTTTATGAGATGACTACTCAT

Fln Alignment:

Hyp_Euler_7021___KLAAGLWDCLVKYRSTVPKFPQTETCDLLIVDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVY
Q9C5X3________________KLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQIAPVIHEWTYDAMCHDLLNMEGNKYVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain