SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208615

Length: 718 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene208615 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-finger domain protein [Zinnia violacea]	-	-	1.0e-29	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	C-terminal zinc-finger	-	-	9.203e-08	-

Source	Gene names
Sma3	AT4g31450; AT4g34040; AT5G10650; AT5G42940; AT5g10650; At1g45180; At1g73760; At2g15530; At2g37150; At4g31450; At4g34040; At5g10650; At5g24870; At5g42940; F25P22.18; F3L17.20; GSVIVT00005654001; GSVIVT00014851001; GSVIVT00017737001; GSVIVT00018214001; GSVI

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31450.1	RING/U-box superfamily protein chr4:15255955-15257977 REVERSE LENGTH=497	3.0e-32	51%
RefSeq	Arabidopsis thaliana	NP_567877.1	RING/U-box domain-containing protein [Arabidopsis thaliana]	4.0e-32	51%
RefSeq	Populus trichocarpa	XP_002301172.1	predicted protein [Populus trichocarpa]	6.0e-36	58%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain