SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208533

Length: 441 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene208533
ATTATCAGGTACTGGTAAGACCACTCTGTCAACAGACCACAACAGGTTCCTGATCGGCGATGATGAACACTGCTGGAGTGAAAATGGTGTTGCCAATATTGAAGGAGGTTGTTATGCCAAATGTATAGATCTCTCGCGGGAAAAGGAGCCTGACATCTGGAACGCCATCAAGTTCGGCACTGTGTTGGAAAACGTGGTATTTGACGAGCACACCAGAGAAGTTGATTATGCTGACAAATCAGTCACAGAGAATACAAGGGCATCCTATCCGATCGAATATATACCCAACGCAAAGATACCCTGCGTGGGCCCTCATCCCAAAAATGTGATATTGCTCGCATGCGACGCCTTCGGCGTTTTGCCACCAGTTAGCAAACTGACTCTGCCCCAGACGATGTACCACTTTATCAGTGGATACACAGCCCTGGTAGCAGGCACAGA

Ace file of the UniGene sp_v3.0_unigene208533 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoenolpyruvate carboxykinase [ATP] n=2 Tax=Cucumis sativus RepID=PCKA_CUCSA	-	-	0.0	95%
FL-Next	sp=Phosphoenolpyruvate carboxykinase [ATP]; Cucumis sativus (Cucumber).	-	-	0.0	95%
Sma3	Phosphoenolpyruvate carboxykinase	-	-	1.108e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoenolpyruvate carboxykinase (ATP).	EC:4.1.1.49	-	1.413e-34	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	1.413e-34	%
Sma3	Citrate cycle (TCA cycle)	00020	1.413e-34	%
Sma3	Pyruvate metabolism	00620	1.413e-34	%
Sma3	Carbon fixation in photosynthetic organisms	00710	1.413e-34	%
Sma3	Metabolic pathways	01100	1.413e-34	%
Sma3	Biosynthesis of secondary metabolites	01110	1.413e-34	%

Source	Gene names
Sma3	At4g37870; At5g65690; CHLREDRAFT_196612; F6H11.190; GSVIVT00011154001; LOC_Os03g15050; LOC_Os10g13700; OSJNBa0004P12.17; OSJNBb0048O22.3; Os03g0255500; Os10g0204400; OsI_10803; OsI_33003; OsJ_10175; OsJ_31009; PCK; PCK1; PCK1b\|PCK1a; PCK2; PCKA; PEPCK1; P

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Phosphoenolpyruvate carboxykinase (ATP), conserved site	IPR015994	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65690.1	PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 chr5:26266477-26269486 FORWARD LENGTH=670	92%
RefSeq	Arabidopsis thaliana	NP_680468.1	phosphoenolpyruvate carboxykinase 2 [Arabidopsis thaliana]	92%
RefSeq	Populus trichocarpa	XP_002302349.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P42066

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 146 - 670

Fln protein: LSGTGKTTLSTDHNRFLIGDDEHCWSENGVANIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENVVFDEHTREVDYADKSVTENTRASYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLTLPQTMYHFISGYTALVAGT

Protein Length: 147

Fln nts: ATTATCAGGTACTGGTAAGACCACTCTGTCAACAGACCACAACAGGTTCCTGATCGGCGATGATGAACACTGCTGGAGTGAAAATGGTGTTGCCAATATTGAAGGAGGTTGTTATGCCAAATGTATAGATCTCTCGCGGGAAAAGGAGCCTGACATCTGGAACGCCATCAAGTTCGGCACTGTGTTGGAAAACGTGGTATTTGACGAGCACACCAGAGAAGTTGATTATGCTGACAAATCAGTCACAGAGAATACAAGGGCATCCTATCCGATCGAATATATACCCAACGCAAAGATACCCTGCGTGGGCCCTCATCCCAAAAATGTGATATTGCTCGCATGCGACGCCTTCGGCGTTTTGCCACCAGTTAGCAAACTGACTCTGCCCCAGACGATGTACCACTTTATCAGTGGATACACAGCCCTGGTAGCAGGCACAGA

Fln Alignment:

biogeco3_euler_19319___LSGTGKTTLSTDHNRFLIGDDEHCWSENGVANIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENVVFDEHTREVDYADKSVTENTRASYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLTLPQTMYHFISGYTALVAGT
P42066________________LSGTGKTTLSTDHNRYLIGDDEHCWSDNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENVVFDEHTREVDYSEKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLSLPQTMYHFISGYTALVAGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain