SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene208400

Length: 298 nt

UniGene Fasta

>sp_v3.0_unigene208400
CAACATCTATGTAAGAGCTGGAAACGTGGGCAGCGGGAGGTTTGTCACAGGCAGGGAGCAGCAAATCCACCTCTGGTTTGATCCCACTAAGGATTTTCACCGTTACAGCATTCTCTGGACTCCATTGAAGATTATATTTTTGTGGATGACATCCCAATAAGAAAGTATCGAAGGACGAACCCTTACACTTTCCCAGCAAGGCCCATGTGGCTGTACGGATCGATCTGGGATGCATCTCCTTGGGCTACAGATAACGGGAAATACAAGGTCGACTACAATTACCAACCATTCGTCGCCC

Ace file of the UniGene sp_v3.0_unigene208400

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xyloglucan endotraglucosylase/hydrolase n=2 Tax=Phaseoleae RepID=C5G5Y4_PHAAN	-	-	2.0e-31	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Xyloglucan endotransglucosylase/hydrolase protein 32	-	-	1.134e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	2.611e-16	-

Source	Gene names
Sma3	ATXG; AoXET1; AoXET2; At2g36870; At3g44990; F14D17.60; GSVIVT00000619001; GSVIVT00022167001; LOC_Os03g01800; LOC_Os10g39840; LeXET2; OJ1063_D06.3; OJ1136_C04.11; OJ1384D03.10; OSJNBa0001O14.5; Os03g0108300; Os07g0480800; OsI_09671; OsI_25995; OsI_34534; O

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36870.1	XTH32 xyloglucan endotransglucosylase/hydrolase 32 chr2:15472869-15474630 REVERSE LENGTH=299	5.0e-32	68%
RefSeq	Arabidopsis thaliana	NP_181224.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	6.0e-32	68%
RefSeq	Populus trichocarpa	XP_002313534.1	predicted protein [Populus trichocarpa]	2.0e-33	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN79

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 139 and 139, STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 99 - 265

Fln protein: NIYVRAGNVGSGRFVTGREQQIHLWFDPTKDFHRYSILWTPLKIIxxVDDIPIRKYRRTNPYTFPARPMWLYGSIWDASPWATDNGKYKVDYNYQPFVA

Protein Length: 100

Fln nts: CAACATCTATGTAAGAGCTGGAAACGTGGGCAGCGGGAGGTTTGTCACAGGCAGGGAGCAGCAAATCCACCTCTGGTTTGATCCCACTAAGGATTTTCACCGTTACAGCATTCTCTGGACTCCATTGAAGATTATAxxxxxxGTGGATGACATCCCAATAAGAAAGTATCGAAGGACGAACCCTTACACTTTCCCAGCAAGGCCCATGTGGCTGTACGGATCGATCTGGGATGCATCTCCTTGGGCTACAGATAACGGGAAATACAAGGTCGACTACAATTACCAACCATTCGTCGCCC

Fln Alignment:

biogeco2_euler_609___NIYVRAGNVGSGRFVTGREQQIHLWFDPTKDFHRYSILWTPLKIIFFVDDIPIRKYRRTNPYTFPARPMWLYGSIWDASPWATDNGKYKVDYNYQPFVA
A9NN79________________NIYVRAGNAGTGRIITGREQQIHLWFDPTKDFHRYSILWTPFKIVFFVDDIPIRKYRRTNPYTFPARPMWLYGSIWDASSWATDNGKYKVDYKYQPFVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain