SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207787

Length: 549 nt

UniGene Fasta

>sp_v3.0_unigene207787
GATGAATCTGGATAACTGCAGGTACCTTACTCTGGATGAGGCAGATAGGTTGGTAGATTTGGGTTTCGAAGATGACATACGAGAGGTTTTTGATCATTTCAAAGCTCAAAGGCAAACTCTTCTCTTCTCTGCAACTATGCCAAAGAAAATTCAAATTTTTGCAAAAAGTGCTCTGGTGAAACCTGTGACTGTAAACGTAGGCAGGGCTGGTGCAGCAAACTTGGATGTCATACAGGAAGTTGAGTATGTCAAACAAGAGGCAAAGATTGTTTATTTATTGGAATGTTTGCAGAAAACTCCCCCTCCTGTGCTCATTTTCTGTGAGAACAAGGCAGACGTTGATGATATTCATGAATACCTTCTTTTGAAAGGCGTGGAAGCTGTGGCAATACATGGAGGAAAGGATCAGGAAGAAAGAGAATATGCAATTTCATCCTTTAAAGCTGGCAAAAAGGATGTCTTAGTGGCAACGGATGTTGCTTCAAAAGGGCTTGATTTTCCTGACATTCAGCATGTTATCAATTATGATATGCCTGCAGAGATAGAGAA

Ace file of the UniGene sp_v3.0_unigene207787

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative DEAD-box protein abstrakt n=1 Tax=Trifolium pratense RepID=Q2PEY4_TRIPR	-	-	0.0	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Dead box ATP-dependent RNA helicase, putative	-	-	9.916e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	4.026e-20	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	4.026e-20	%
Sma3	Lipopolysaccharide biosynthesis	00540	4.026e-20	%
Sma3	Folate biosynthesis	00790	4.026e-20	%
Sma3	Metabolic pathways	01100	4.026e-20	%

Source	Gene names
Sma3	At2g47330; At3g06480; At4g33370; At5g51280; B1156H12.12-1; B1156H12.12-2; CHLREDRAFT_131102; CHLREDRAFT_178281; F17M5.130; F24P17.2; GSVIVT00003270001; GSVIVT00023931001; GSVIVT00028128001; LOC_Os01g36860; LOC_Os02g05660; LOC_Os03g19530; LOC_Os06g40020; L

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51280.1	DEAD-box protein abstrakt, putative chr5:20841456-20843645 FORWARD LENGTH=591	96%
RefSeq	Arabidopsis thaliana	NP_199941.1	DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana]	96%
RefSeq	Populus trichocarpa	XP_002328711.1	predicted protein [Populus trichocarpa]	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 182 - 504

Fln protein: MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPKKIQIFAKSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE

Protein Length: 183

Fln nts: GATGAATCTGGATAACTGCAGGTACCTTACTCTGGATGAGGCAGATAGGTTGGTAGATTTGGGTTTCGAAGATGACATACGAGAGGTTTTTGATCATTTCAAAGCTCAAAGGCAAACTCTTCTCTTCTCTGCAACTATGCCAAAGAAAATTCAAATTTTTGCAAAAAGTGCTCTGGTGAAACCTGTGACTGTAAACGTAGGCAGGGCTGGTGCAGCAAACTTGGATGTCATACAGGAAGTTGAGTATGTCAAACAAGAGGCAAAGATTGTTTATTTATTGGAATGTTTGCAGAAAACTCCCCCTCCTGTGCTCATTTTCTGTGAGAACAAGGCAGACGTTGATGATATTCATGAATACCTTCTTTTGAAAGGCGTGGAAGCTGTGGCAATACATGGAGGAAAGGATCAGGAAGAAAGAGAATATGCAATTTCATCCTTTAAAGCTGGCAAAAAGGATGTCTTAGTGGCAACGGATGTTGCTTCAAAAGGGCTTGATTTTCCTGACATTCAGCATGTTATCAATTATGATATGCCTGCAGAGATAGAGAA

Fln Alignment:

biogeco1_euler_16087___NLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPKKIQIFAKSALVKPVTVNVGRAGA-ANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE
B8LKZ7________________NLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKYTRLIQLLEEIMDGSRLLIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain