SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207683

Length: 1403 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene207683

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb\|AAL07170.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14126.1\| unknown protein [Arabidopsis thaliana] gb\|AAM65430.1\| unknown [Arabidopsis thaliana] gb\|AEE27652.1\| pre-mRNA-processing factor 39 [Ar	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Pre-mRNA-processing protein prp39, putative	-	-	2.643e-09	-

Source	Gene names
Sma3	At1g04080; F20D22.14; GSVIVT00003390001; GSVIVT00028510001; LOC_Os03g11200; MA4_25J11.26; MICPUCDRAFT_19557; OSJNBb0011E04.121; Os03g0210400; Os08g0379000; OsI_10482; OsI_29060; OsJ_09874; OsJ_27131; P0709D11.11; PHYPADRAFT_119915; PHYPADRAFT_140219; PHYP

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G04080.3	PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein chr1:1051803-1056550 FORWARD LENGTH=823	49%
RefSeq	Arabidopsis thaliana	NP_001154302.1	pre-mRNA-processing factor 39 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002320608.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB58

Fln msg: Distance to subject end: 176 aas, your sequence is shorter than subject: 238 - 268

Fln protein: MYKKAKEFDVKIHDFETAIRRPYFHVKPLDDLQLGNWHRYLDFIEKVNDFDRTVKLYERCLIACANYPEYWIRYVQCMETAGSMEVANDALARATQIFVKRQPEIHIFAARFKEQMGDIPGARAEYEFLCTELAPGLLDAIIKHANMEHRLGTSESAMSIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAAGNAERAREVLNEALELLPFSKTLLEVAIHLESRSLGSKQIEYLDSV

Protein Length: 239

Fln nts: ACTTGTTAACCACTCTTGAGGATATCATGGGTGCAACAATACATACAATGCTGCCAGGGAAGATCAAAGTTCAAATAAGGGCAAAGAGGGCCTCTGAGCACCACTTCATATCTCGGACATAGTATGGTTTTGTCGGGAAGGTAAATTTAGCATATTTGTGCCTAACTTTGGAAGTGTCAATGATGTTACAGTGAAATTTTTCCTTCTGGTCCAAGATTTCCGTCTGTGGTGGGTTTAATCCGATCTTTAATGGGAAGACGACAGAAACAGAGGAGGAATTGTGTGCAGTTGTAACAATTGGATTGTATCTGTGGCATGTTTTTTCAGGTTATTTGAGCGAGGCCTGTCATATGTTGGAACTGACTACTTGTCCTATCCTCTTTGGGATAAGTACATTGAATTTGAATATTCACAGCAGGAGTGGAGTCGCCTGGCACAGATTTACACTCGAATTTTGCAGATTCCTATCCAACAGTTGGACCGATATTACGGAAGTTTCAAGGAACTGTCTGCCAGTAGACCATTATTAGAGTTGCGAACTGTAGAAGAAAATGCAGCTGCTGCTGCAATAGTTACGGGCCAAGACACAGGTGAAAGGCCCACAGATGGTGATGAAGCACCAAATCCTGAAGTTGCTGTTTCATCTGAAGCTGAAGAATTGGAGAAGTACTTGGCTGTTAGAGAAGCA_-_ATGTATAAGAAAGCAAAAGAATTTGATGTAAAGATCCATGATTTTGAGACAGCTATTCGTAGACCTTATTTTCACGTGAAGCCTCTAGATGACTTGCAACTAGGCAACTGGCATCGGTATCTTGACTTCATTGAGAAAGTGAACGATTTTGATCGGACAGTAAAATTGTATGAAAGATGTCTTATTGCATGTGCAAACTACCCAGAGTATTGGATTCGTTATGTTCAATGTATGGAAACCGCTGGAAGCATGGAAGTTGCAAATGATGCTCTTGCACGGGCTACACAAATTTTTGTGAAGAGACAACCTGAGATCCACATTTTTGCTGCAAGATTCAAAGAACAGATGGGAGACATTCCTGGTGCTCGTGCAGAGTATGAATTTCTTTGCACAGAGCTAGCCCCTGGTCTCCTAGATGCTATAATTAAACATGCCAACATGGAACATCGGCTGGGGACCTCTGAATCAGCAATGTCAATATTTGAAACAGCTATTGCAACTGAGAAAGCAAAAGAACAGTCACAGTCACTGCCTCTGTTATATATTCAGTACTCTCGTTTTCTTCAGCTAGCTGCAGGCAATGCAGAAAGAGCAAGAGAAGTTTTGAATGAAGCACTGGAGCTTCTGCCTTTTTCAAAGACTCTTCTTGAGGTAGCTATACATTTAGAATCAAGAAGTCTTGGTTCTAAACAAATTGAGTACCTAGATTCTGTTG

Fln Alignment:

biogeco1_euler_5440___MEHRLGTSESAMSIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAAGNAERAREVLNEALELLPFSKTLLEVAIHLESRSLGSKQIEYLDSV
D5AB58________________MEHRLGSSESAMPIFETAIATEKAKEQSQSLPLLYIQYSRFLQLAVGNADRAREVLIEALELLPFSKTLLEVAIHLESRRLGSKQIDYLDSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain