SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene207681

Length: 2023 nt

UniGene Fasta

>sp_v3.0_unigene207681
CGGCGAGCTCCTGCTGAAATCAGTTCGTGCAAACAGCTTGGAGAGATCAATCTTCAAAGAACCAGCTCTCCGGTTCGATTCCTGCCAGTGTCGGTACTTTGCCGGTGCTTAATTATTTAGATCTCTCGGACAATCTTCTCACCGGGCCGATCCCTTCCGAGCTCGGTAATCTGAAGCTGAATACCTTCGATGTCTCGGACAACCGTTTGTCTGGTGCAGTTCCTTTGGCTTTTGAAAATCTGGTGTATGAAAAGAGTTTTCTGGGAAATCCCGAGCTGTGTAGCCGCGAGGCCTTTAATGGCACCAAGTCCTGTTCTGAAGTACGTAGTGAAAAGGCTAAGCGCCAGCGTTGGTGGTGGTTGCTTCGTTGCTTGTTTGCACTGTCTATTATTATTTTCGTCCTTGGACTCGCGTGGTTTTACAGAAGGTACCGAAACTTTGCAAATGCTGAGAGGAAAAAATCTGTGGACAAATCTTCGTGGATGCTGACTTCATTTCACAGGTTGGGATTCAGTGAATACGAGATTCTGGATTGCTTGGATGAAGATAATGTCATTGGAAGCGGTGGAGCCGGTAAGGTTTACAAGGCTATGCTGAGCAATGGTGAATTCGTGGCCATCAAGAGGCTTTGGAGCAGTGGTAAAAGCGATGCTTCCAATGACCATGGTTTCAAAGCTGAGGTGGACACATTGGGGAAGATCAGGCATAAGAACATCGTAAAGCTATGGTGTTGTTGTAGTAATAGCGACTCCAATCTGTTGGTCTATGAGTACATGCCTAATGGGAGCCTTGGAGATCTGCTTCATGGGCCTAAGTCTAGTGTTCTTGACTGGCCCATAAGATACAAGATTGCTCTTGAAGCAGCTCAGGGCTTAGCATATCTTCATCATGATTGTGAACCATCCATTGTTCACAGAGACGTGAAATCCAATAATATTTTGCTGGATGATGATTATCGGGCTTATGTTGCAGATTTTGGTGTTGCAAAAATTCTACAAAGTGGTGGCGACAGGACTGATACTATGACTGCAATTGCCGGGTCTTATGGGTACATAGCACCAGAATATGCCTACACACTCAAAGTGAATGAAAAGAGTGACATCTATAGTTTTGGAGTGGTGATCTTGGAGCTGGTGACGGGAAGACAACCAATAGATCCAGAATTTGGAGAGAACAAAGATATTGTGAAGTGGGTGTGCAATAAAATAGAGAAAAATAATGGATTGCTTGAAGTGTTGGATCCAAAGTTTGTGGATTCCTTCAAGGAGGAAATGGCCATGGTTCTGAAAGTAGGACTCCTCTGCACAAGCACCCTGCCCATCAACAGGCCAACAATGAGGAAGGTCGTACATTTGCTGCAGGAAGCCAATCCACAGCAGAAGGCCAAAGCAACTGCCAAGGATGAAAAATAGTCTCCTGACTCTTACGTGGAACCCACAATTTGCATTGTATAAGCATGATGGTAATTGCACCTGGCGTGGACTTTTCTTCTTTGCAGGGCCTCCATATTTACTGCCACTTTGTAGCTTCTAAGTTTGTTTAGGTTTGTTCATGTTTAACCTTTCGAATTTAACCTAATACTGATAATCAAAATAGAAGCTTGTCTCTGTAACTCTTTGGCATCATTCTCCACGAGAGCGCAATGGTTATAGGCGCATCTGTCTACCTAGTCGTGGGCCATTGTGCTGCTTCGCGTTTGATAAATCTGCCCTCCGGGTTAATGGTCGTGGTGGTCTGGCTAAAACTCAGAGCTTGCGCCCTGTCAAACACCACGAGGAAAGCACAGATCGATACTGTCGTCATCATCATCTTGGTTAGACTTGTTACCGAGCTCCACCTGCTATACTCTCCTGGGCAGAGGCATTTAATTGTAAACCAGAATACTGAAGCTTTCAATGTAATATAGCTGGCAATCAGGATGATTTTAATGGTCGCTGCCTGAGATTCTCAATATCCTGTCAGGCTGTCAGTCATAAATGGCTATGTGGTAGAAGTTTAATGGTAAAGTATCAGATTCTCATTA

Ace file of the UniGene sp_v3.0_unigene207681

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	0.0	86%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	86%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.14e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.175e-26	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.495e-20	-
Sma3		EC:2.7.11.3-	-	8.819e-07	-

Source	Gene names
Sma3	AT1G08590; AT1G28440; AT1G34110; AT1G75820; AT2G33170; AT3G49670; AT4G20140; AT4G20270; AT4G28490; AT4G28650; AT4g20140; AT4g20270; AT5G25930; AT5G48940; AT5G49660; AT5G61480; AT5G63930; AT5G65700; AT5G65710; At1g08590; At1g09970; At1g09970/F21M12.36; At1

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	epidermis development	GO:0008544	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G28440.1	HSL1 HAESA-like 1 chr1:9996914-10000171 FORWARD LENGTH=996	56%
RefSeq	Arabidopsis thaliana	NP_174166.1	receptor-like protein kinase HSL1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002305776.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 470 - 998

Fln protein: ASSC*NQFVQTAWRDQSSKNQLSGSIPASVGTLPVLNYLDLSDNLLTGPIPSELGNLKLNTFDVSDNRLSGAVPLAFENLVYEKSFLGNPELCSREAFNGTKSCSEVRSEKAKRQRWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLGFSEYEILDCLDEDNVIGSGGAGKVYKAMLSNGEFVAIKRLWSSGKSDASNDHGFKAEVDTLGKIRHKNIVKLWCCCSNSDSNLLVYEYMPNGSLGDLLHGPKSSVLDWPIRYKIALEAAQGLAYLHHDCEPSIVHRDVKSNNILLDDDYRAYVADFGVAKILQSGGDRTDTMTAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRQPIDPEFGENKDIVKWVCNKIEKNNGLLEVLDPKFVDSFKEEMAMVLKVGLLCTSTLPINRPTMRKVVHLLQEANPQQKAKATAKDEK*

Protein Length: 471

Fln nts: CGGCGAGCTCCTGCTGAAATCAGTTCGTGCAAACAGCTTGGAGAGATCAATCTTCAAAGAACCAGCTCTCCGGTTCGATTCCTGCCAGTGTCGGTACTTTGCCGGTGCTTAATTATTTAGATCTCTCGGACAATCTTCTCACCGGGCCGATCCCTTCCGAGCTCGGTAATCTGAAGCTGAATACCTTCGATGTCTCGGACAACCGTTTGTCTGGTGCAGTTCCTTTGGCTTTTGAAAATCTGGTGTATGAAAAGAGTTTTCTGGGAAATCCCGAGCTGTGTAGCCGCGAGGCCTTTAATGGCACCAAGTCCTGTTCTGAAGTACGTAGTGAAAAGGCTAAGCGCCAGCGTTGGTGGTGGTTGCTTCGTTGCTTGTTTGCACTGTCTATTATTATTTTCGTCCTTGGACTCGCGTGGTTTTACAGAAGGTACCGAAACTTTGCAAATGCTGAGAGGAAAAAATCTGTGGACAAATCTTCGTGGATGCTGACTTCATTTCACAGGTTGGGATTCAGTGAATACGAGATTCTGGATTGCTTGGATGAAGATAATGTCATTGGAAGCGGTGGAGCCGGTAAGGTTTACAAGGCTATGCTGAGCAATGGTGAATTCGTGGCCATCAAGAGGCTTTGGAGCAGTGGTAAAAGCGATGCTTCCAATGACCATGGTTTCAAAGCTGAGGTGGACACATTGGGGAAGATCAGGCATAAGAACATCGTAAAGCTATGGTGTTGTTGTAGTAATAGCGACTCCAATCTGTTGGTCTATGAGTACATGCCTAATGGGAGCCTTGGAGATCTGCTTCATGGGCCTAAGTCTAGTGTTCTTGACTGGCCCATAAGATACAAGATTGCTCTTGAAGCAGCTCAGGGCTTAGCATATCTTCATCATGATTGTGAACCATCCATTGTTCACAGAGACGTGAAATCCAATAATATTTTGCTGGATGATGATTATCGGGCTTATGTTGCAGATTTTGGTGTTGCAAAAATTCTACAAAGTGGTGGCGACAGGACTGATACTATGACTGCAATTGCCGGGTCTTATGGGTACATAGCACCAGAATATGCCTACACACTCAAAGTGAATGAAAAGAGTGACATCTATAGTTTTGGAGTGGTGATCTTGGAGCTGGTGACGGGAAGACAACCAATAGATCCAGAATTTGGAGAGAACAAAGATATTGTGAAGTGGGTGTGCAATAAAATAGAGAAAAATAATGGATTGCTTGAAGTGTTGGATCCAAAGTTTGTGGATTCCTTCAAGGAGGAAATGGCCATGGTTCTGAAAGTAGGACTCCTCTGCACAAGCACCCTGCCCATCAACAGGCCAACAATGAGGAAGGTCGTACATTTGCTGCAGGAAGCCAATCCACAGCAGAAGGCCAAAGCAACTGCCAAGGATGAAAAATAG___TCTCCTGACTCTTACGTGGAACCCACAATTTGCATTGTATAAGCATGATGGTAATTGCACCTGGCGTGGACTTTTCTTCTTTGCAGGGCCTCCATATTTACTGCCACTTTGTAGCTTCTAAGTTTGTTTAGGTTTGTTCATGTTTAACCTTTCGAATTTAACCTAATACTGATAATCAAAATAGAAGCTTGTCTCTGTAACTCTTTGGCATCATTCTCCACGAGAGCGCAATGGTTATAGGCGCATCTGTCTACCTAGTCGTGGGCCATTGTGCTGCTTCGCGTTTGATAAATCTGCCCTCCGGGTTAATGGTCGTGGTGGTCTGGCTAAAACTCAGAGCTTGCGCCCTGTCAAACACCACGAGGAAAGCACAGATCGATACTGTCGTCATCATCATCTTGGTTAGACTTGTTACCGAGCTCCACCTGCTATACTCTCCTGGGCAGAGGCATTTAATTGTAAACCAGAATACTGAAGCTTTCAATGTAATATAGCTGGCAATCAGGATGATTTTAATGGTCGCTGCCTGAGATTCTCAATATCCTGTCAGGCTGTCAGTCATAAATGGCTATGTGGTAGAAGTTTAATGGTAAAGTATCAGATTCTCATTA

Fln Alignment:

biogeco1_euler_4845___SKNQLSGSIPASVGTLPVLNYLDLSDNLLTGPIPSELGNLKLNTFDVSDNRLSGAVPLAFENLVYEKSFLGNPELCSREAFNGTKSCSEVRSEKAKRQRWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLGFSEYEILDCLDEDNVIGSGGAGKVYKAMLSNGEFVAIKRLWSSGKSDASNDHGFKAEVDTLGKIRHKNIVKLWCCCSNSDSNLLVYEYMPNGSLGDLLHGPKSSVLDWPIRYKIALEAAQGLAYLHHDCEPSIVHRDVKSNNILLDDDYRAYVADFGVAKILQSGGDRTDTMTAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRQPIDPEFGENKDIVKWVCNKIEKNNGLLEVLDPKFVDSFKEEMAMVLKVGLLCTSTLPINRPTMRKVVHLLQEANPQQKAKATAKDEK*SPDSYVEPTICIV
Q19AV8________________SKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLKLNTFDVSNNRLSGAVPLAFANPVYEKSFLGNPELCSREAFNGTKSCSEERSERAKRQSWWWLLRCLFALSIIIFVLGLAWFYRRYRNFANAERKKSVDKSSWMLTSFHRLRFSEYEILDCLDEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKATGKDGKLSPYYCEEPTICIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain